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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
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| IPR000243 | Peptidase T1A, proteasome beta-subunit | PRINTS | PR00141 | PROTEASOME | coord: 178..189
score: 38.07
coord: 203..214
score: 31.25
coord: 47..62
score: 46.45 |
| None | No IPR available | GENE3D | 3.60.20.10 | | coord: 40..255
e-value: 7.4E-60
score: 201.8 |
| None | No IPR available | PANTHER | PTHR11599:SF1 | PROTEASOME SUBUNIT BETA TYPE 7,10 | coord: 3..272 |
| None | No IPR available | PANTHER | PTHR11599 | PROTEASOME SUBUNIT ALPHA/BETA | coord: 3..272 |
| None | No IPR available | SUPERFAMILY | 56235 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) | coord: 10..230 |
| IPR024689 | Proteasome beta subunit, C-terminal | PFAM | PF12465 | Pr_beta_C | coord: 233..259
e-value: 6.4E-11
score: 41.2 |
| IPR001353 | Proteasome, subunit alpha/beta | PFAM | PF00227 | Proteasome | coord: 37..216
e-value: 1.0E-39
score: 135.6 |
| IPR016050 | Proteasome beta-type subunit, conserved site | PROSITE | PS00854 | PROTEASOME_BETA_1 | coord: 43..90 |
| IPR023333 | Proteasome B-type subunit | PROSITE | PS51476 | PROTEASOME_BETA_2 | coord: 39..217
score: 36.745 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000005447 ID=EMLSAP00000005447|Name=EMLSAP00000005447|organism=Lepeophtheirus salmonis|type=polypeptide|length=272bp
MSTQFNLEEPVSGFSFENARRNLHLQEKGYKSFKTTKTGTTICALIYKDG
IVFGADNRATAGNIIANKFTLKIHELAPNIVACGAGVSADCDKVTELLAS
QLKLHRLETGRQSRVVTAERILTQRLFQYQGHVQSYLILGGVDVSGRYIY
DISAHGCASPKLYAATGSGMLGAMAXLEXRYKVNMTEEEAKELVKDAILA
GIFNDNASGSNVDIAVTRISDGSMEIIRGYAKPNKKGERKNKYTYAKGTT
AILSEVVKPIVIPTPQVQPMET back to top
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