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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR001723 | Steroid hormone receptor | PRINTS | PR00398 | STRDHORMONER | coord: 332..342 score: 45.9 coord: 431..447 score: 44.6 coord: 410..431 score: 36.93 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PRINTS | PR00047 | STROIDFINGER | coord: 287..302 score: 57.2 coord: 320..328 score: 57.99 coord: 328..336 score: 57.94 coord: 271..287 score: 59.51 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | SMART | SM00399 | ZnF_C4 | coord: 268..339 e-value: 3.1E-36 score: 136.4 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PFAM | PF00105 | zf-C4 | coord: 270..337 e-value: 2.7E-29 score: 101.0 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PROSITE | PS00031 | NUCLEAR_REC_DBD_1 | coord: 271..297 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PROSITE | PS51030 | NUCLEAR_REC_DBD_2 | coord: 268..343 score: 19.261 |
IPR008946 | Nuclear hormone receptor, ligand-binding | GENE3D | 1.10.565.10 | | coord: 332..486 e-value: 4.6E-42 score: 143.7 |
IPR008946 | Nuclear hormone receptor, ligand-binding | SUPERFAMILY | 48508 | Nuclear receptor ligand-binding domain | coord: 342..489 |
IPR013088 | Zinc finger, NHR/GATA-type | GENE3D | 3.30.50.10 | | coord: 268..331 e-value: 5.2E-29 score: 99.9 |
IPR000536 | Nuclear hormone receptor, ligand-binding, core | PFAM | PF00104 | Hormone_recep | coord: 399..488 e-value: 1.1E-16 score: 60.4 |
None | No IPR available | PANTHER | PTHR24084 | FAMILY NOT NAMED | coord: 30..488 |
None | No IPR available | PANTHER | PTHR24084:SF0 | SUBFAMILY NOT NAMED | coord: 30..488 |
None | No IPR available | SUPERFAMILY | 57716 | Glucocorticoid receptor-like (DNA-binding domain) | coord: 269..354 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000008071 ID=EMLSAP00000008071|Name=EMLSAP00000008071|organism=Lepeophtheirus salmonis|type=polypeptide|length=508bp MSRIIVMKIGQFGELWKIFDKVSPNGVSIEDNNSENNNNLSKNLLLDSTD LSLHKSSPGGSSGGGKLLXQLLDTDPESSSERVHKGNKIGIALKNKILSS SVGEDVLNSPPSPLDSLKGKNVCSPSTSVSTSFNRNDTSNNNXTITSSSE EQDSIYLLNIIKDEAAPSYEDNEILYSLSNSSTMTLLQNNEMEIADSCEV NANSPTTSMKDSDVHSSRDPLNXQLNVTTTTNIASYAPPGSPDHHLCSST SETNLFSRDIIKEEEGQRRTCLVCGDIASGFHYGVSSCEACKAFFKRTIQ GNIEYTXPASNECEINKRRRKACQACRFQKCLRMGMLKEGVRLDRVRGGR QKYRRMIESSPYIQPPPKKTLEDNKLLQVLRHCEPEAFLVNMDMTLPNYK IRTISTLSDFYNRELIGTIEWAKQIPGFSNLTINDQMKLLQSSWSEILVL SLVYRSLPYNGKISLTNNFSLDESQARLCGLSEFFFQVWKPKYQCTKYTP STAKYQAG back to top
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