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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR000033 | LDLR class B repeat | SMART | SM00135 | LY | coord: 156..199 e-value: 2.9E-6 score: 36.8 coord: 53..112 e-value: 3.0E-5 score: 33.4 coord: 113..155 e-value: 3.9E-11 score: 53.0 coord: 10..52 e-value: 3.9E-5 score: 33.1 |
IPR000033 | LDLR class B repeat | PFAM | PF00058 | Ldl_recept_b | coord: 133..174 e-value: 7.5E-6 score: 26.0 coord: 91..129 e-value: 2.5E-15 score: 56.3 coord: 30..70 e-value: 2.2E-7 score: 30.9 |
IPR000033 | LDLR class B repeat | PROSITE | PS51120 | LDLRB | coord: 30..72 score: 13.985 |
IPR000033 | LDLR class B repeat | PROSITE | PS51120 | LDLRB | coord: 1..29 score: 4.819 |
IPR000033 | LDLR class B repeat | PROSITE | PS51120 | LDLRB | coord: 178..192 score: 4.448 |
IPR000033 | LDLR class B repeat | PROSITE | PS51120 | LDLRB | coord: 133..177 score: 12.105 |
IPR000033 | LDLR class B repeat | PROSITE | PS51120 | LDLRB | coord: 89..132 score: 15.331 |
IPR011042 | Six-bladed beta-propeller, TolB-like | GENE3D | 2.120.10.30 | | coord: 5..221 e-value: 1.2E-74 score: 250.5 |
None | No IPR available | GENE3D | 2.10.25.10 | | coord: 222..262 e-value: 5.7E-11 score: 41.7 |
None | No IPR available | PANTHER | PTHR10529 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED | coord: 1..401 |
None | No IPR available | PANTHER | PTHR10529:SF151 | SUBFAMILY NOT NAMED | coord: 1..401 |
None | No IPR available | SUPERFAMILY | 63825 | YWTD domain | coord: 7..213 |
None | No IPR available | SUPERFAMILY | 57196 | EGF/Laminin | coord: 217..262 |
None | No IPR available | TMHMM | TMhelix | | coord: 74..93 |
None | No IPR available | TMHMM | TMhelix | | coord: 331..353 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000008639 ID=EMLSAP00000008639|Name=EMLSAP00000008639|organism=Lepeophtheirus salmonis|type=polypeptide|length=469bp APIDEGNKKEVVVDHNIVIADGLACDWXYNHIYWTDTGTNSINLAEFDGR LISTIIVDDLEEPRSIALHPAKGYVLYIAILVYFTFIFSWMFWSDWGEDP KIERAGMDGSHRETIISETLRWPNGITLDLVLDKLYWIDAKLNIVGSSDL DGSNSRVVYYSKQNLKHPFSISIFEDWMYWTDWERKAIFRANKFNGKDKQ VPMVIHVYHPYRQKDSINHCLPLNGRCSHVCVPAPQFTKDSAKTACVCPN GLRLSHDNLNCVHDPNYVPHRDSRLFKLSEKSQFNDSFHLSKYFNHNEYY LGPRSSLNETYKKSEKNSQVVSPLPNGNNETAGFXAGXAIGIGAGXILLL FLVRIHNPFPLYSYQYDMYLQVLMAIYRCFWYKSLQSINFDNPVYRKASE EGNGSRGGRNSSSPGAALLGMTIEREQSSFPQRNLTTLTLSSDISEATEI QPLNSNDTHVCSSEEVINS back to top
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