EMLSAP00000012971, EMLSAP00000012971 (polypeptide) Lepeophtheirus salmonis

Overview
NameEMLSAP00000012971
Unique NameEMLSAP00000012971
Typepolypeptide
OrganismLepeophtheirus salmonis (salmon louse)
Sequence length413
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006028Gamma-aminobutyric acid A receptorPRINTSPR00253GABAARECEPTRcoord: 180..200
score: 35.86
coord: 381..401
score: 27.98
coord: 240..261
score: 42.12
coord: 206..227
score: 28.96
IPR006202Neurotransmitter-gated ion-channel ligand-bindingGENE3D2.70.170.10coord: 48..154
e-value: 8.8E-17
score: 60.6
IPR006202Neurotransmitter-gated ion-channel ligand-bindingPFAMPF02931Neur_chan_LBDcoord: 39..154
e-value: 7.6E-16
score: 57.7
IPR006202Neurotransmitter-gated ion-channel ligand-bindingSUPERFAMILY63712Nicotinic receptor ligand binding domain-likecoord: 34..155
NoneNo IPR availableGENE3D1.20.58.390coord: 178..273
e-value: 5.4E-30
score: 103.3
coord: 378..402
e-value: 5.4E-30
score: 103.3
NoneNo IPR availableTMHMMTMhelixcoord: 179..201
NoneNo IPR availableTMHMMTMhelixcoord: 152..169
NoneNo IPR availableTMHMMTMhelixcoord: 242..264
NoneNo IPR availableTMHMMTMhelixcoord: 380..402
NoneNo IPR availableTMHMMTMhelixcoord: 208..227
IPR006029Neurotransmitter-gated ion-channel transmembrane domainPFAMPF02932Neur_chan_membcoord: 184..310
e-value: 8.4E-19
score: 68.2
IPR006029Neurotransmitter-gated ion-channel transmembrane domainSUPERFAMILY90112Neurotransmitter-gated ion-channel transmembrane porecoord: 179..402
IPR006201Neurotransmitter-gated ion-channelPANTHERPTHR18945NEUROTRANSMITTER GATED ION CHANNELcoord: 42..404

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
EBI Gene Prediction Pipeline2013-07-17
InterproScan 52014-05-02
InterproScan 5, GO-Slims (generic)2014-05-10
Cross References
External references for this polypeptide
DatabaseAccession
Ensembl Metazoa (protein)EMLSAP00000012971 (primary cross-reference)
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
EMLSAT00000012971EMLSAT00000012971-708818Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>EMLSAP00000012971 ID=EMLSAP00000012971|Name=EMLSAP00000012971|organism=Lepeophtheirus salmonis|type=polypeptide|length=413bp
MMADARRSQSSSNSMAWDPILRDFGQLKIQNMDLKDKPFNGGYNIHEIPP
TENGDPLTVEVSVSLRNILEIDEHKQLLTIETTLRLYWVDERLSVKHLLE
NSSMDYILLHPKVAKLIWFPDIYIDFAKDLRIPTYMTPPASLRIYRNSTI
RYATHPFVNFIGVYPGVIMKIILKRNINYHLLQTYLPSGIFVFVAWLSLF
LPPQSIPGRITMAMTTLLTLAAMFGAVRQSTPRVSYVSALDIWMCTCIIF
VFFALLEYVIMLSLMTKCGKLKKKRSSKEKEEEEDQSSTFLRRPHPCEAP
SATQGINKVFYSVESPCHLVMNKQEPKVVTKKRGFSGLCHKKRRVSSLKG
RMSDSPNSSNSNNINSNVDMNITPFIKFERSCSFIMAVLFISFNGFYWSW
LLKEPKGEPQFQN
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