60s ribosomal protein l27, maker-scaffold1323_size47899-snap-gene-0.17 (gene) Tigriopus kingsejongensis

Overview


Name	60s ribosomal protein l27
Unique Name	maker-scaffold1323_size47899-snap-gene-0.17
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of 60s ribosomal protein l27 vs. L. salmonis genes
Match: EMLSAG00000005005 (supercontig:LSalAtl2s:LSalAtl2s260:403367:403765:1 gene:EMLSAG00000005005 transcript:EMLSAT00000005005 description:"augustus_masked-LSalAtl2s260-processed-gene-4.5")

HSP 1 Score: 219.935 bits (559), Expect = 1.039e-75
Identity = 101/132 (76.52%), Postives = 121/132 (91.67%), Query Frame = 0

Query:    5 MKSGKVVLVLSGRFAGRKAVIVKPTDEGTADKPFGHALLAGIDRYPRIVTKRMSKKKIKMRSKIKPFLKVVNYNHMMPTRYSVDIGFDKANLNKETLKDPMKKKKARNMVRVQFEERYKTGKNRWFFQKLRF 136
            M+SG++V+VLSGRFAGRKAVIV+PTDEG  +KPFGHAL+AG+DRYPR VTKRMSKKK+K RSKIKPFLKV+NYNH+MPTRY+VDI FDK ++NKE LKDPMKKKKAR +VR  FEE+YK+G ++WFFQ+LRF
Sbjct:    1 MRSGRIVVVLSGRFAGRKAVIVRPTDEGNGEKPFGHALVAGVDRYPRKVTKRMSKKKVKQRSKIKPFLKVLNYNHLMPTRYNVDIKFDKESINKEVLKDPMKKKKARQLVRNDFEEKYKSGNSKWFFQRLRF 132

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BLAST of 60s ribosomal protein l27 vs. L. salmonis genes
Match: EMLSAG00000010695 (supercontig:LSalAtl2s:LSalAtl2s709:143943:144283:1 gene:EMLSAG00000010695 transcript:EMLSAT00000010695 description:"maker-LSalAtl2s709-snap-gene-1.3")

HSP 1 Score: 67.781 bits (164), Expect = 4.016e-16
Identity = 46/119 (38.66%), Postives = 60/119 (50.42%), Query Frame = 0

Query:    1 MVKIMKSGKVVLVLSGRFAGRKAVIVKPTDEGTADKPFGHALLAGID-RYPRIVTKRMSKKKIKMRSKIKPFLKVVNYNHMMPTRYSVDIGFDKANLNKETLKDPMKKKKARNMVRVQF 118
            M KIM+SG++V+VLS     R++VIV+PT    A +   H     +    P I     S   I                H+MP RY+V I FDK  +NK+ LKDPMKKKKA  +V   F
Sbjct:    1 MAKIMRSGRIVVVLSEHIVCRQSVIVRPTK---AIRRCSHRWCGTLSTNAPGINLSSRSSTTI----------------HLMPIRYNVHIKFDKEFINKQILKDPMKKKKAGQLVPNDF 100

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BLAST of 60s ribosomal protein l27 vs. L. salmonis genes
Match: EMLSAG00000009106 (supercontig:LSalAtl2s:LSalAtl2s573:376010:378859:-1 gene:EMLSAG00000009106 transcript:EMLSAT00000009106 description:"snap_masked-LSalAtl2s573-processed-gene-3.5")

HSP 1 Score: 63.929 bits (154), Expect = 2.611e-14
Identity = 30/55 (54.55%), Postives = 45/55 (81.82%), Query Frame = 0

Query:   55 KRMSKKKIKMRSKIKPFLKVVNYNHMMPTRYSVDIGFDKANLNKETLKDPMKKKK 109
            K MSKK++K RSKIK FLKV++ NH+MP+RY++ I FDK ++NKE +K+  K+++
Sbjct:    2 KCMSKKRVKTRSKIKIFLKVIDNNHLMPSRYNLVIKFDKESVNKEVVKETTKRRR 56

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BLAST of 60s ribosomal protein l27 vs. L. salmonis genes
Match: EMLSAG00000008855 (supercontig:LSalAtl2s:LSalAtl2s552:66828:67919:-1 gene:EMLSAG00000008855 transcript:EMLSAT00000008855 description:"snap-LSalAtl2s552-processed-gene-0.37")

HSP 1 Score: 60.077 bits (144), Expect = 7.876e-13
Identity = 26/53 (49.06%), Postives = 38/53 (71.70%), Query Frame = 0

Query:   81 MPTRYSVDIGFDKANLNKETLKDPMKKKKARNMVRVQFEERYKTGKNRWFFQK 133
            MPTRY+VD  FDK ++N + LKD M+ K+ R +V   F+ +YK G+ +WFF+K
Sbjct:    1 MPTRYNVDSNFDKESINLDVLKDTMEMKEGRQLVCNDFDNKYKYGRIKWFFEK 53

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BLAST of 60s ribosomal protein l27 vs. L. salmonis genes
Match: EMLSAG00000008229 (supercontig:LSalAtl2s:LSalAtl2s496:465796:466133:-1 gene:EMLSAG00000008229 transcript:EMLSAT00000008229 description:"maker-LSalAtl2s496-snap-gene-4.4")

HSP 1 Score: 55.4546 bits (132), Expect = 1.827e-11
Identity = 28/70 (40.00%), Postives = 42/70 (60.00%), Query Frame = 0

Query:   67 KIKPFLKVVNYNHMMPTRYSVDIGFDKANLNKETLKDPMKKKKARNMVRVQFEERYKTGKNRWFFQKLRF 136
            K+K FLKV+ YNH++ T Y+V I   + ++NKE LK  M  K     V   FE++  +G ++ F Q+LR 
Sbjct:   15 KVKFFLKVLCYNHLILTSYNVGIKLFEESINKEILKGIMNMKNTIQHVPYDFEDKNTSGNSKCFVQRLRL 84

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BLAST of 60s ribosomal protein l27 vs. L. salmonis genes
Match: EMLSAG00000006010 (supercontig:LSalAtl2s:LSalAtl2s326:412759:435794:-1 gene:EMLSAG00000006010 transcript:EMLSAT00000006010 description:"snap_masked-LSalAtl2s326-processed-gene-4.1")

HSP 1 Score: 49.2914 bits (116), Expect = 5.686e-9
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 0

Query:    1 MVKIMKSGKVVLVLSGRFAGRKAVIVKPTDEGTADKP 37
            M +IM+SG++V+ LSG FAG KA IV+PTDE   + P
Sbjct:   47 MGRIMRSGRIVMALSGHFAGCKAXIVRPTDEENGENP 83

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BLAST of 60s ribosomal protein l27 vs. L. salmonis genes
Match: EMLSAG00000000213 (supercontig:LSalAtl2s:LSalAtl2s1030:53525:53767:-1 gene:EMLSAG00000000213 transcript:EMLSAT00000000213 description:"maker-LSalAtl2s1030-snap-gene-0.1")

HSP 1 Score: 43.5134 bits (101), Expect = 5.584e-7
Identity = 25/54 (46.30%), Postives = 32/54 (59.26%), Query Frame = 0

Query:   45 GIDRYPRIVTKRMSKKKIKMRSKIKPFLKVVNYNHMMPTRYSVDIGFDKANLNK 98
            G D YPR V +         RSK   F KV+NYN++M T Y+VDI FDK ++ K
Sbjct:   11 GGDFYPRKVGE--------TRSKCMSFHKVLNYNNLMHTCYNVDIEFDKESIGK 56

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BLAST of 60s ribosomal protein l27 vs. SwissProt
Match: gi|47117189|sp|Q7ZV82.3|RL27_DANRE (RecName: Full=60S ribosomal protein L27)

HSP 1 Score: 195.282 bits (495), Expect = 1.979e-64
Identity = 95/136 (69.85%), Postives = 111/136 (81.62%), Query Frame = 0

Query:    1 MVKIMKSGKVVLVLSGRFAGRKAVIVKPTDEGTADKPFGHALLAGIDRYPRIVTKRMSKKKIKMRSKIKPFLKVVNYNHMMPTRYSVDIGFDKANLNKETLKDPMKKKKARNMVRVQFEERYKTGKNRWFFQKLRF 136
            M K MK GKVV+VL+GR+AGRKAVIVK  D+GTAD+P+ HAL+AGIDRYPR VT  M KKKI  RSKIK F+KV NYNH+MPTRYSVDI  DK  +NK+  +DP  K+KAR   +V+FEERYKTGKN+WFFQKLRF
Sbjct:    1 MGKFMKPGKVVMVLAGRYAGRKAVIVKNIDDGTADRPYSHALVAGIDRYPRKVTATMGKKKIAKRSKIKAFVKVFNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136

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BLAST of 60s ribosomal protein l27 vs. SwissProt
Match: gi|47117102|sp|P61359.2|RL27_HIPCM (RecName: Full=60S ribosomal protein L27)

HSP 1 Score: 194.126 bits (492), Expect = 6.465e-64
Identity = 95/136 (69.85%), Postives = 110/136 (80.88%), Query Frame = 0

Query:    1 MVKIMKSGKVVLVLSGRFAGRKAVIVKPTDEGTADKPFGHALLAGIDRYPRIVTKRMSKKKIKMRSKIKPFLKVVNYNHMMPTRYSVDIGFDKANLNKETLKDPMKKKKARNMVRVQFEERYKTGKNRWFFQKLRF 136
            M K MK GKVV+VL+GR+AGRKAVIVK  D+GTAD+P+ HAL+AGIDRYPR VT  M KKKI  RSKIK F+KV NYNH+MPTRYSVDI  DK  +NK+  +DP  K KAR   +V+FEERYKTGKN+WFFQKLRF
Sbjct:    1 MGKFMKPGKVVMVLAGRYAGRKAVIVKNIDDGTADRPYSHALVAGIDRYPRKVTAPMGKKKIAKRSKIKAFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKSKARREAKVKFEERYKTGKNKWFFQKLRF 136

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BLAST of 60s ribosomal protein l27 vs. SwissProt
Match: gi|47117099|sp|P61356.2|RL27_BOVIN (RecName: Full=60S ribosomal protein L27 >gi|47117100|sp|P61357.2|RL27_CERNI RecName: Full=60S ribosomal protein L27 >gi|47117101|sp|P61358.2|RL27_MOUSE RecName: Full=60S ribosomal protein L27 >gi|47117737|sp|P61354.2|RL27_RAT RecName: Full=60S ribosomal protein L27 >gi|47117772|sp|P61353.2|RL27_HUMAN RecName: Full=60S ribosomal protein L27; AltName: Full=Large ribosomal subunit protein eL27 >gi|47117773|sp|P61355.2|RL27_CHICK RecName: Full=60S ribosomal protein L27 >gi|75077221|sp|Q4R8Z4.1|RL27_MACFA RecName: Full=60S ribosomal protein L27 >gi|158514031|sp|A1XQU5.1|RL27_PIG RecName: Full=60S ribosomal protein L27)

HSP 1 Score: 194.126 bits (492), Expect = 6.681e-64
Identity = 94/136 (69.12%), Postives = 111/136 (81.62%), Query Frame = 0

Query:    1 MVKIMKSGKVVLVLSGRFAGRKAVIVKPTDEGTADKPFGHALLAGIDRYPRIVTKRMSKKKIKMRSKIKPFLKVVNYNHMMPTRYSVDIGFDKANLNKETLKDPMKKKKARNMVRVQFEERYKTGKNRWFFQKLRF 136
            M K MK GKVVLVL+GR++GRKAVIVK  D+GT+D+P+ HAL+AGIDRYPR VT  M KKKI  RSKIK F+KV NYNH+MPTRYSVDI  DK  +NK+  +DP  K+KAR   +V+FEERYKTGKN+WFFQKLRF
Sbjct:    1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136

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BLAST of 60s ribosomal protein l27 vs. SwissProt
Match: gi|47117269|sp|Q90YU1.3|RL27_ICTPU (RecName: Full=60S ribosomal protein L27)

HSP 1 Score: 193.356 bits (490), Expect = 1.262e-63
Identity = 93/136 (68.38%), Postives = 111/136 (81.62%), Query Frame = 0

Query:    1 MVKIMKSGKVVLVLSGRFAGRKAVIVKPTDEGTADKPFGHALLAGIDRYPRIVTKRMSKKKIKMRSKIKPFLKVVNYNHMMPTRYSVDIGFDKANLNKETLKDPMKKKKARNMVRVQFEERYKTGKNRWFFQKLRF 136
            M K MK GKVV+VL+GR+AGRKAVIVK  D+GTAD+P+ HAL++GIDRYPR VT  M KKK+  RSKIK F+KV NYNH+MPTRYSVDI  DK  +NK+  +DP  K+KAR   +V+FEERYKTGKN+WFFQKLRF
Sbjct:    1 MGKFMKPGKVVMVLAGRYAGRKAVIVKNIDDGTADRPYSHALVSGIDRYPRKVTATMGKKKVAKRSKIKAFVKVFNYNHLMPTRYSVDIPLDKTIVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136

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BLAST of 60s ribosomal protein l27 vs. SwissProt
Match: gi|62901064|sp|Q9XSU7.3|RL27_CANFA (RecName: Full=60S ribosomal protein L27)

HSP 1 Score: 192.586 bits (488), Expect = 2.572e-63
Identity = 93/136 (68.38%), Postives = 111/136 (81.62%), Query Frame = 0

Query:    1 MVKIMKSGKVVLVLSGRFAGRKAVIVKPTDEGTADKPFGHALLAGIDRYPRIVTKRMSKKKIKMRSKIKPFLKVVNYNHMMPTRYSVDIGFDKANLNKETLKDPMKKKKARNMVRVQFEERYKTGKNRWFFQKLRF 136
            M K MK GKVVLVL+GR++GRKAVIVK  D+GT+D+P+ HAL+AGIDRYPR VT  M KKKI  RSKIK F+KV NYNH+MPTRYSVDI  DK  +NK+  +DP  K+KAR   +V+FEE+YKTGKN+WFFQKLRF
Sbjct:    1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEEKYKTGKNKWFFQKLRF 136

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BLAST of 60s ribosomal protein l27 vs. SwissProt
Match: gi|2829752|sp|P91914.1|RL27_CAEEL (RecName: Full=60S ribosomal protein L27)

HSP 1 Score: 190.66 bits (483), Expect = 1.346e-62
Identity = 92/136 (67.65%), Postives = 112/136 (82.35%), Query Frame = 0

Query:    1 MVKIMKSGKVVLVLSGRFAGRKAVIVKPTDEGTADKPFGHALLAGIDRYPRIVTKRMSKKKIKMRSKIKPFLKVVNYNHMMPTRYSVDIGFDKANLNKETLKDPMKKKKARNMVRVQFEERYKTGKNRWFFQKLRF 136
            M KIMK GKVVLVL G++AGRKAV+VK  DEG +D+ + HA++AGIDRYP  VTK M KKKI+ R+K+KPFLKVV+Y H++PTRYSVD+ FDK N+NKE LK P KK+KA   V+ +FEERYKTGKN+WFF KLRF
Sbjct:    1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEERYKTGKNKWFFTKLRF 136

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BLAST of 60s ribosomal protein l27 vs. SwissProt
Match: gi|134039201|sp|P0C2H7.1|RL27B_YEAST (RecName: Full=60S ribosomal protein L27-B; AltName: Full=Large ribosomal subunit protein eL27-B)

HSP 1 Score: 170.629 bits (431), Expect = 1.310e-54
Identity = 75/136 (55.15%), Postives = 107/136 (78.68%), Query Frame = 0

Query:    1 MVKIMKSGKVVLVLSGRFAGRKAVIVKPTDEGTADKPFGHALLAGIDRYPRIVTKRMSKKKIKMRSKIKPFLKVVNYNHMMPTRYSVDIGFDKANLNKETLKDPMKKKKARNMVRVQFEERYKTGKNRWFFQKLRF 136
            M K +K+GKV +V+ GR+AG+K VIVKP DEG+   PFGHAL+AGI+RYP  VTK+   KK+  R+KIKPF+KVVNYNH++PTRY++D+   K+ ++ ET + P ++++A+ +V+  FEER++ GKN+WFF KLRF
Sbjct:    1 MAKFLKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPSKVTKKHGAKKVAKRTKIKPFIKVVNYNHLLPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKKAFEERHQAGKNQWFFSKLRF 136

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BLAST of 60s ribosomal protein l27 vs. SwissProt
Match: gi|134039200|sp|P0C2H6.1|RL27A_YEAST (RecName: Full=60S ribosomal protein L27-A; AltName: Full=Large ribosomal subunit protein eL27-A)

HSP 1 Score: 169.859 bits (429), Expect = 2.699e-54
Identity = 75/136 (55.15%), Postives = 107/136 (78.68%), Query Frame = 0

Query:    1 MVKIMKSGKVVLVLSGRFAGRKAVIVKPTDEGTADKPFGHALLAGIDRYPRIVTKRMSKKKIKMRSKIKPFLKVVNYNHMMPTRYSVDIGFDKANLNKETLKDPMKKKKARNMVRVQFEERYKTGKNRWFFQKLRF 136
            M K +K+GKV +V+ GR+AG+K VIVKP DEG+   PFGHAL+AGI+RYP  VTK+   KK+  R+KIKPF+KVVNYNH++PTRY++D+   K+ ++ ET + P ++++A+ +V+  FEER++ GKN+WFF KLRF
Sbjct:    1 MAKFLKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPLKVTKKHGAKKVAKRTKIKPFIKVVNYNHLLPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKKAFEERHQAGKNQWFFSKLRF 136

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BLAST of 60s ribosomal protein l27 vs. SwissProt
Match: gi|400991|sp|Q02984.1|RL27_PYRST (RecName: Full=60S ribosomal protein L27)

HSP 1 Score: 160.999 bits (406), Expect = 8.183e-51
Identity = 77/136 (56.62%), Postives = 103/136 (75.74%), Query Frame = 0

Query:    1 MVKIMKSGKVVLVLSGRFAGRKAVIVKPTDEGTADKPFGHALLAGIDRYPRIVTKRMSKKKIKMRSKIKPFLKVVNYNHMMPTRYSVDIGFDKANLNKETLKDPMKKKKARNMVRVQFEERYKTGKNRWFFQKLRF 136
            MVK +KSGKVV+VLSGRFAG+KAVIV+  D+GT+ +P+GHAL+ G+ + PR VTKR S+KK   +S +K F+K VNYNH+MPTRY++D+ F    +  E  ++P KK +AR   +   EE++KTGKNRWFF KLRF
Sbjct:    1 MVKFLKSGKVVVVLSGRFAGKKAVIVRNFDDGTSSRPYGHALVVGLQKEPRKVTKRQSQKKQAKKSTLKTFIKTVNYNHLMPTRYTLDVDFK--GVAAEAQENPTKKVEARKECKKLLEEKFKTGKNRWFFTKLRF 134

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BLAST of 60s ribosomal protein l27 vs. SwissProt
Match: gi|6174937|sp|O14388.2|RL27A_SCHPO (RecName: Full=60S ribosomal protein L27-A)

HSP 1 Score: 160.229 bits (404), Expect = 1.522e-50
Identity = 71/136 (52.21%), Postives = 101/136 (74.26%), Query Frame = 0

Query:    1 MVKIMKSGKVVLVLSGRFAGRKAVIVKPTDEGTADKPFGHALLAGIDRYPRIVTKRMSKKKIKMRSKIKPFLKVVNYNHMMPTRYSVDIGFDKANLNKETLKDPMKKKKARNMVRVQFEERYKTGKNRWFFQKLRF 136
            MVKI+K GKV L+  GRFAG+K VI++  D+G+   PFGHA++AG++RYP  VTK M  K+I  RS++KPF+KVVNYNH+MPTRY++++   K  +  +T K+P ++  AR  V+  FEE+Y++GK+ WFF  LRF
Sbjct:    1 MVKILKPGKVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMGAKRIARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSAARKTVKKTFEEKYQSGKSAWFFTPLRF 136

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BLAST of 60s ribosomal protein l27 vs. nr
Match: gi|961375780|gb|ALS04634.1| (60S ribosomal protein L27 [Pseudodiaptomus poplesia] >gi|961376052|gb|ALS04770.1| 60S ribosomal protein L27 [Pseudodiaptomus poplesia])

HSP 1 Score: 238.039 bits (606), Expect = 8.195e-79
Identity = 114/136 (83.82%), Postives = 128/136 (94.12%), Query Frame = 0

Query:    1 MVKIMKSGKVVLVLSGRFAGRKAVIVKPTDEGTADKPFGHALLAGIDRYPRIVTKRMSKKKIKMRSKIKPFLKVVNYNHMMPTRYSVDIGFDKANLNKETLKDPMKKKKARNMVRVQFEERYKTGKNRWFFQKLRF 136
            M KIMK+GKVVL+LSGR+AGRKAV+VKP+DEGT DKPF HAL+AGIDRYPR VTK+MSKK+I  RSKIKPFLKVVNYNH++PTRYSVDI FDKAN+NKETLKDP KKKKARNMVR++FEE+YKTGKNRWFFQKLRF
Sbjct:    1 MGKIMKAGKVVLLLSGRYAGRKAVVVKPSDEGTTDKPFSHALVAGIDRYPRKVTKKMSKKRITKRSKIKPFLKVVNYNHVLPTRYSVDIPFDKANINKETLKDPSKKKKARNMVRLKFEEKYKTGKNRWFFQKLRF 136

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BLAST of 60s ribosomal protein l27 vs. nr
Match: gi|961376278|gb|ALS04883.1| (60S ribosomal protein L27 [Pseudodiaptomus poplesia])

HSP 1 Score: 234.572 bits (597), Expect = 1.786e-77
Identity = 111/132 (84.09%), Postives = 125/132 (94.70%), Query Frame = 0

Query:    5 MKSGKVVLVLSGRFAGRKAVIVKPTDEGTADKPFGHALLAGIDRYPRIVTKRMSKKKIKMRSKIKPFLKVVNYNHMMPTRYSVDIGFDKANLNKETLKDPMKKKKARNMVRVQFEERYKTGKNRWFFQKLRF 136
            MK+GKVVL+LSGR+AGRKAV+VKP+DEGT DKPF HAL+AGIDRYPR VTK+MSKK+I  RSKIKPFLKVVNYNH++PTRYSVDI FDKAN+NKETLKDP KKKKARNMVR++FEE+YKTGKNRWFFQKLRF
Sbjct:    1 MKAGKVVLLLSGRYAGRKAVVVKPSDEGTTDKPFSHALVAGIDRYPRKVTKKMSKKRITKRSKIKPFLKVVNYNHVLPTRYSVDIPFDKANINKETLKDPSKKKKARNMVRLKFEEKYKTGKNRWFFQKLRF 132

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BLAST of 60s ribosomal protein l27 vs. nr
Match: gi|961375098|gb|ALS04293.1| (60S ribosomal protein L27 [Acartia pacifica] >gi|961375100|gb|ALS04294.1| 60S ribosomal protein L27 [Acartia pacifica] >gi|961375102|gb|ALS04295.1| 60S ribosomal protein L27 [Acartia pacifica] >gi|961375104|gb|ALS04296.1| 60S ribosomal protein L27 [Acartia pacifica] >gi|961375106|gb|ALS04297.1| 60S ribosomal protein L27 [Acartia pacifica])

HSP 1 Score: 226.868 bits (577), Expect = 2.138e-74
Identity = 108/136 (79.41%), Postives = 126/136 (92.65%), Query Frame = 0

Query:    1 MVKIMKSGKVVLVLSGRFAGRKAVIVKPTDEGTADKPFGHALLAGIDRYPRIVTKRMSKKKIKMRSKIKPFLKVVNYNHMMPTRYSVDIGFDKANLNKETLKDPMKKKKARNMVRVQFEERYKTGKNRWFFQKLRF 136
            M KI+K+GKVVL+LSGR+AGRKAV+VKP +EG++DKPF HAL+AGI+RYPR VTKRM+KKK++ RSKIKPFLKVVNYNH+MPTRYSVDI FDK+NLNKE LKDP KKK ARNMVRV+FEE+YK GKN+WFFQKLRF
Sbjct:    1 MGKIIKAGKVVLLLSGRYAGRKAVVVKPNEEGSSDKPFPHALVAGIERYPRKVTKRMNKKKVQKRSKIKPFLKVVNYNHVMPTRYSVDIPFDKSNLNKEVLKDPKKKKTARNMVRVKFEEKYKAGKNKWFFQKLRF 136

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BLAST of 60s ribosomal protein l27 vs. nr
Match: gi|961375108|gb|ALS04298.1| (60S ribosomal protein L27 [Acartia pacifica])

HSP 1 Score: 225.328 bits (573), Expect = 7.632e-74
Identity = 107/136 (78.68%), Postives = 125/136 (91.91%), Query Frame = 0

Query:    1 MVKIMKSGKVVLVLSGRFAGRKAVIVKPTDEGTADKPFGHALLAGIDRYPRIVTKRMSKKKIKMRSKIKPFLKVVNYNHMMPTRYSVDIGFDKANLNKETLKDPMKKKKARNMVRVQFEERYKTGKNRWFFQKLRF 136
            M KI+K+GKVVL+LSGR+AGRKAV+VKP +EG++DKPF HAL+AGI+RYPR VTKRM+KKK++ RSKIKPFLKVVNYNH+MPTRYSVDI FDK+NLNKE LKDP KKK ARNM RV+FEE+YK GKN+WFFQKLRF
Sbjct:    1 MGKIIKAGKVVLLLSGRYAGRKAVVVKPNEEGSSDKPFPHALVAGIERYPRKVTKRMNKKKVQKRSKIKPFLKVVNYNHVMPTRYSVDIPFDKSNLNKEVLKDPKKKKTARNMARVKFEEKYKAGKNKWFFQKLRF 136

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BLAST of 60s ribosomal protein l27 vs. nr
Match: gi|225714122|gb|ACO12907.1| (60S ribosomal protein L27 [Lepeophtheirus salmonis] >gi|290561357|gb|ADD38079.1| 60S ribosomal protein L27 [Lepeophtheirus salmonis])

HSP 1 Score: 224.172 bits (570), Expect = 2.694e-73
Identity = 104/136 (76.47%), Postives = 124/136 (91.18%), Query Frame = 0

Query:    1 MVKIMKSGKVVLVLSGRFAGRKAVIVKPTDEGTADKPFGHALLAGIDRYPRIVTKRMSKKKIKMRSKIKPFLKVVNYNHMMPTRYSVDIGFDKANLNKETLKDPMKKKKARNMVRVQFEERYKTGKNRWFFQKLRF 136
            M KIM+SG++V+VLSGRFAGRKAVIV+PTDEG  +KPFGHAL+AG+DRYPR VTKRMSKKK+K RSKIKPFLKV+NYNH+MPTRY+VDI FDK ++NKE LKDPMKKKKAR +VR  FEE+YK+G ++WFFQ+LRF
Sbjct:    1 MGKIMRSGRIVVVLSGRFAGRKAVIVRPTDEGNGEKPFGHALVAGVDRYPRKVTKRMSKKKVKQRSKIKPFLKVLNYNHLMPTRYNVDIKFDKESINKEVLKDPMKKKKARQLVRNDFEEKYKSGNSKWFFQRLRF 136

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BLAST of 60s ribosomal protein l27 vs. nr
Match: gi|1325272250|ref|XP_023320747.1| (60S ribosomal protein L27-like [Eurytemora affinis])

HSP 1 Score: 223.402 bits (568), Expect = 5.203e-73
Identity = 113/136 (83.09%), Postives = 129/136 (94.85%), Query Frame = 0

Query:    1 MVKIMKSGKVVLVLSGRFAGRKAVIVKPTDEGTADKPFGHALLAGIDRYPRIVTKRMSKKKIKMRSKIKPFLKVVNYNHMMPTRYSVDIGFDKANLNKETLKDPMKKKKARNMVRVQFEERYKTGKNRWFFQKLRF 136
            M KIMK+GKVVL+LSGR+AGRKAV+V+P+D+GT+DKPF HAL+AGIDRYPR VTK+M+KKKI+ RS IKPFLKVVNYNH+MPTRYSV+I FDKANLNKETLKDPMKKKKARNMVR +FEE+YKTGKNRWFFQKLRF
Sbjct:    1 MGKIMKTGKVVLLLSGRYAGRKAVVVRPSDDGTSDKPFSHALVAGIDRYPRKVTKKMNKKKIQRRSVIKPFLKVVNYNHLMPTRYSVEITFDKANLNKETLKDPMKKKKARNMVRTKFEEKYKTGKNRWFFQKLRF 136

[Close]

BLAST of 60s ribosomal protein l27 vs. nr
Match: gi|225711028|gb|ACO11360.1| (60S ribosomal protein L27 [Caligus rogercresseyi])

HSP 1 Score: 222.246 bits (565), Expect = 1.238e-72
Identity = 106/136 (77.94%), Postives = 119/136 (87.50%), Query Frame = 0

Query:    1 MVKIMKSGKVVLVLSGRFAGRKAVIVKPTDEGTADKPFGHALLAGIDRYPRIVTKRMSKKKIKMRSKIKPFLKVVNYNHMMPTRYSVDIGFDKANLNKETLKDPMKKKKARNMVRVQFEERYKTGKNRWFFQKLRF 136
            M KIMKSGKVV+VLSGR+AGRKAVIV+PTDEG  +KPFGHAL+AG+DRYPR VTKRMSKKK+K RSKIKPFLKV+NYNHMMP RY+VD  FDK  +NKE LKDPMKKKKAR +VR  FE +YK G N+WFFQKLRF
Sbjct:    1 MGKIMKSGKVVVVLSGRYAGRKAVIVRPTDEGNGEKPFGHALIAGVDRYPRKVTKRMSKKKVKQRSKIKPFLKVLNYNHMMPARYTVDTKFDKEAINKEVLKDPMKKKKARQIVRNDFESKYKAGDNKWFFQKLRF 136

[Close]

BLAST of 60s ribosomal protein l27 vs. nr
Match: gi|290462955|gb|ADD24525.1| (60S ribosomal protein L27 [Lepeophtheirus salmonis])

HSP 1 Score: 216.853 bits (551), Expect = 1.509e-70
Identity = 100/132 (75.76%), Postives = 120/132 (90.91%), Query Frame = 0

Query:    5 MKSGKVVLVLSGRFAGRKAVIVKPTDEGTADKPFGHALLAGIDRYPRIVTKRMSKKKIKMRSKIKPFLKVVNYNHMMPTRYSVDIGFDKANLNKETLKDPMKKKKARNMVRVQFEERYKTGKNRWFFQKLRF 136
            M+SG++V+VLSGRFAGRKAVIV+PTDEG  +KPFGHAL+AG+DRYPR VTKRMSKKK+K RSKIKPFLKV+NYNH+MPTRY+VDI FDK ++NKE LKDPMKKKKAR +VR  FEE+YK+G ++WFFQ+L F
Sbjct:    1 MRSGRIVVVLSGRFAGRKAVIVRPTDEGNGEKPFGHALVAGVDRYPRKVTKRMSKKKVKQRSKIKPFLKVLNYNHLMPTRYNVDIKFDKESINKEVLKDPMKKKKARQLVRNDFEEKYKSGNSKWFFQRLGF 132

[Close]

BLAST of 60s ribosomal protein l27 vs. nr
Match: gi|321467552|gb|EFX78542.1| (hypothetical protein DAPPUDRAFT_231081 [Daphnia pulex] >gi|1022756692|gb|KZS03437.1| 60S ribosomal protein L27 [Daphnia magna])

HSP 1 Score: 213.386 bits (542), Expect = 4.096e-69
Identity = 101/136 (74.26%), Postives = 120/136 (88.24%), Query Frame = 0

Query:    1 MVKIMKSGKVVLVLSGRFAGRKAVIVKPTDEGTADKPFGHALLAGIDRYPRIVTKRMSKKKIKMRSKIKPFLKVVNYNHMMPTRYSVDIGFDKANLNKETLKDPMKKKKARNMVRVQFEERYKTGKNRWFFQKLRF 136
            M KIMKSGKVVLVL GRFAGRKA+IVK  DEGT++KP+GHAL+AG+DRYPR VT +MSKKK+  RSKIK F+K+VNYNHMMPTRYSVD+ FDK  +NK+++KDP+K+KKAR  VR +FEERYK+GKNRWFF KLRF
Sbjct:    1 MGKIMKSGKVVLVLGGRFAGRKAIIVKNYDEGTSEKPYGHALVAGVDRYPRKVTNKMSKKKVAKRSKIKAFVKIVNYNHMMPTRYSVDLSFDKNLVNKDSIKDPLKRKKARFAVRTKFEERYKSGKNRWFFSKLRF 136

[Close]

BLAST of 60s ribosomal protein l27 vs. nr
Match: gi|675390508|gb|KFM83405.1| (60S ribosomal protein L27, partial [Stegodyphus mimosarum])

HSP 1 Score: 213.001 bits (541), Expect = 6.146e-69
Identity = 103/136 (75.74%), Postives = 120/136 (88.24%), Query Frame = 0

Query:    1 MVKIMKSGKVVLVLSGRFAGRKAVIVKPTDEGTADKPFGHALLAGIDRYPRIVTKRMSKKKIKMRSKIKPFLKVVNYNHMMPTRYSVDIGFDKANLNKETLKDPMKKKKARNMVRVQFEERYKTGKNRWFFQKLRF 136
            M KIMK GKVVLVL+G++AGRKAV+VK  DEGTADKP+GHAL+AGIDRYPR VT+RM KKKI  RSKIKPF+KV+NYNH+MPTRY VDI FDK+ +NKE LKDP K++KAR  V+ +FEERYKTGK+RWFFQKLRF
Sbjct:    1 MGKIMKIGKVVLVLNGKYAGRKAVVVKNNDEGTADKPYGHALIAGIDRYPRKVTRRMGKKKIAKRSKIKPFVKVLNYNHLMPTRYMVDIQFDKSIVNKEVLKDPAKRRKARRDVKAKFEERYKTGKSRWFFQKLRF 136

The following BLAST results are available for this feature:

BLAST of 60s ribosomal protein l27 vs. L. salmonis genes
BLAST of 60s ribosomal protein l27 vs. SwissProt
BLAST of 60s ribosomal protein l27 vs. nr

BLAST of 60s ribosomal protein l27 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 7


Match Name	E-value	Identity	Description
EMLSAG00000005005	1.039e-75	76.52	supercontig:LSalAtl2s:LSalAtl2s260:403367:403765:1...	[more]
EMLSAG00000010695	4.016e-16	38.66	supercontig:LSalAtl2s:LSalAtl2s709:143943:144283:1...	[more]
EMLSAG00000009106	2.611e-14	54.55	supercontig:LSalAtl2s:LSalAtl2s573:376010:378859:-...	[more]
EMLSAG00000008855	7.876e-13	49.06	supercontig:LSalAtl2s:LSalAtl2s552:66828:67919:-1 ...	[more]
EMLSAG00000008229	1.827e-11	40.00	supercontig:LSalAtl2s:LSalAtl2s496:465796:466133:-...	[more]
EMLSAG00000006010	5.686e-9	56.76	supercontig:LSalAtl2s:LSalAtl2s326:412759:435794:-...	[more]
EMLSAG00000000213	5.584e-7	46.30	supercontig:LSalAtl2s:LSalAtl2s1030:53525:53767:-1...	[more]

BLAST of 60s ribosomal protein l27 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 19


Match Name	E-value	Identity	Description
gi\|47117189\|sp\|Q7ZV82.3\|RL27_DANRE	1.979e-64	69.85	RecName: Full=60S ribosomal protein L27	[more]
gi\|47117102\|sp\|P61359.2\|RL27_HIPCM	6.465e-64	69.85	RecName: Full=60S ribosomal protein L27	[more]
gi\|47117099\|sp\|P61356.2\|RL27_BOVIN	6.681e-64	69.12	RecName: Full=60S ribosomal protein L27 >gi\|471171...	[more]
gi\|47117269\|sp\|Q90YU1.3\|RL27_ICTPU	1.262e-63	68.38	RecName: Full=60S ribosomal protein L27	[more]
gi\|62901064\|sp\|Q9XSU7.3\|RL27_CANFA	2.572e-63	68.38	RecName: Full=60S ribosomal protein L27	[more]
gi\|2829752\|sp\|P91914.1\|RL27_CAEEL	1.346e-62	67.65	RecName: Full=60S ribosomal protein L27	[more]
gi\|134039201\|sp\|P0C2H7.1\|RL27B_YEAST	1.310e-54	55.15	RecName: Full=60S ribosomal protein L27-B; AltName...	[more]
gi\|134039200\|sp\|P0C2H6.1\|RL27A_YEAST	2.699e-54	55.15	RecName: Full=60S ribosomal protein L27-A; AltName...	[more]
gi\|400991\|sp\|Q02984.1\|RL27_PYRST	8.183e-51	56.62	RecName: Full=60S ribosomal protein L27	[more]
gi\|6174937\|sp\|O14388.2\|RL27A_SCHPO	1.522e-50	52.21	RecName: Full=60S ribosomal protein L27-A	[more]

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BLAST of 60s ribosomal protein l27 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|961375780\|gb\|ALS04634.1\|	8.195e-79	83.82	60S ribosomal protein L27 [Pseudodiaptomus poplesi...	[more]
gi\|961376278\|gb\|ALS04883.1\|	1.786e-77	84.09	60S ribosomal protein L27 [Pseudodiaptomus poplesi...	[more]
gi\|961375098\|gb\|ALS04293.1\|	2.138e-74	79.41	60S ribosomal protein L27 [Acartia pacifica] >gi\|9...	[more]
gi\|961375108\|gb\|ALS04298.1\|	7.632e-74	78.68	60S ribosomal protein L27 [Acartia pacifica]	[more]
gi\|225714122\|gb\|ACO12907.1\|	2.694e-73	76.47	60S ribosomal protein L27 [Lepeophtheirus salmonis...	[more]
gi\|1325272250\|ref\|XP_023320747.1\|	5.203e-73	83.09	60S ribosomal protein L27-like [Eurytemora affinis...	[more]
gi\|225711028\|gb\|ACO11360.1\|	1.238e-72	77.94	60S ribosomal protein L27 [Caligus rogercresseyi]	[more]
gi\|290462955\|gb\|ADD24525.1\|	1.509e-70	75.76	60S ribosomal protein L27 [Lepeophtheirus salmonis...	[more]
gi\|321467552\|gb\|EFX78542.1\|	4.096e-69	74.26	hypothetical protein DAPPUDRAFT_231081 [Daphnia pu...	[more]
gi\|675390508\|gb\|KFM83405.1\|	6.146e-69	75.74	60S ribosomal protein L27, partial [Stegodyphus mi...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold1323_size47899	supercontig	scaffold1323_size47899:30981..31760 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	C:ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
maker-scaffold1323_size47899-snap-gene-0.17-mRNA-1	maker-scaffold1323_size47899-snap-gene-0.17-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold1323_size47899:30981..31760-

gene from alignment at scaffold1323_size47899:30981..31760-

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>maker-scaffold1323_size47899-snap-gene-0.17 ID=maker-scaffold1323_size47899-snap-gene-0.17|Name=60s ribosomal protein l27|organism=Tigriopus kingsejongensis|type=gene|length=780bp|location=Sequence derived from alignment at scaffold1323_size47899:30981..31760- (Tigriopus kingsejongensis)
TTTTCCTGTCCACCTTCGGAAGTTTGAGGCGAGGTGAATCTTTCTCTCGC
TCGGCAAGATGGTGAAAATAATGAAATCTGGCAAGGTGGTCCTTGTCCTG
TCCGGTCGATTTGCCGGCAGGAAGGCCGTCATCGTCAAGCCCACGGACGA
AGGCACCGCTGACAAGCCCTTCGGACACGCTTTGTTGGCCGGTATCGACC
GATATCCTCGTATCGTGACCAAGCGCATGTCCAAGAAGAAGATCAAGATG
CGCTCCAAGATCAAGCCCTTCTTGAAGGTATGTCCAACTCGGGGCGGTCG
ATGGGGTCCTTGGACCTTCCAACTGTGCCGCCGAAGTAGGGATTGGAACT
CTCATTTCATTGAATGTGATCCACCTCGGTGTACCTGGGTGAAACGTGCT
TACATTGAGGGAGGAGGGAGTGAGGGCTCGAATAGCTAGATTGCCGCCCA
GTTTGAAACCAGGCGACCCGAGTGGTCAGGTGTGGCACGATGACCCTCTC
TGGAAGTGGCCACGAGCCTTGAGAAGGACTCATTCGTTTAATTTCGGCTT
GCAGGTGGTCAACTACAACCATATGATGCCCACCCGATACAGTGTGGACA
TCGGTTTCGACAAGGCCAACCTGAACAAGGAGACCTTGAAGGACCCCATG
AAGAAGAAGAAGGCCCGCAACATGGTCCGAGTTCAGTTTGAGGAACGCTA
CAAAACGGGCAAAAATAGGTGGTTCTTCCAGAAGCTGAGATTCTAAGCGT
TGGCTCTTCGACTTCATGGCGAACATGTTG

Synonyms

The feature '60s ribosomal protein l27' has the following synonyms


Synonym
Tk03421

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