retinoid x receptor, maker-scaffold192_size271026-snap-gene-1.22 (gene) Tigriopus kingsejongensis

Overview


Name	retinoid x receptor
Unique Name	maker-scaffold192_size271026-snap-gene-1.22
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000001919 (supercontig:LSalAtl2s:LSalAtl2s132:616435:622808:1 gene:EMLSAG00000001919 transcript:EMLSAT00000001919 description:"augustus_masked-LSalAtl2s132-processed-gene-6.5")

HSP 1 Score: 464.922 bits (1195), Expect = 3.890e-163
Identity = 256/451 (56.76%), Postives = 300/451 (66.52%), Query Frame = 0

Query:   14 VPPTPP-LAGLAHPPQSPLELKPDVSLLLNAHSPALPRPTS----------------PAVH-------------YPP---LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRG------------GHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISE---QGGAFSRQESDDLQAHMPGGFDGDQPN----KRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKDDGPNGNGADVNDVAAQSLELFIKEILEE 412
             PPTP  L    + PQSP++LKPD SLLL   S     P S                P VH             YPP   LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKEL YACREN+ C+IDKRQRNRCQYCRYMKCL TGM+REAVQEER+RG             +  +  +E VESST  G  GG+M I+RI+ AE + E       F   +++   +      D +       K++++ QL+EWAK +PHF++LK+ED++ LIR GWNELL+AG AF S+   DGIL  +   + RENAH AGVG IFDRVLVEL+ KMKEM+MDKAELGCLRAIILFNPDAKGL      +VE+ REKVYATLEEY R+ HENEPSRFAKLLLRLPALRSIGLKC+EHLFFYKL+ D   +GN           LE FI+ +LEE
Sbjct:    4 TPPTPNHLLNPGYMPQSPVDLKPDASLLLTTLSNPQSTPPSSAYPVGESMYGSQAPHPGVHGHARSTQSPPNNTYPPNHPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELTYACRENRDCVIDKRQRNRCQYCRYMKCLDTGMKREAVQEERHRGSNGPNHNNNNNNNNNNSRNSEEVESSTSGG--GGDMPIERIIEAEDVGEMKQDTSEFLLLDNNSSMSGGGSIGDMEIQRFGLAKKRIIHQLIEWAKLVPHFSELKVEDQVTLIRGGWNELLVAGLAFXSIKLNDGILLGNGTIVTRENAHEAGVGHIFDRVLVELIAKMKEMQMDKAELGCLRAIILFNPDAKGLSD--VTKVENLREKVYATLEEYTRSVHENEPSRFAKLLLRLPALRSIGLKCLEHLFFYKLVGDYLNDGN----------PLEKFIQSLLEE 440

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BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000009969 (supercontig:LSalAtl2s:LSalAtl2s651:302705:304416:-1 gene:EMLSAG00000009969 transcript:EMLSAT00000009969 description:"maker-LSalAtl2s651-augustus-gene-2.5")

HSP 1 Score: 221.476 bits (563), Expect = 1.565e-67
Identity = 125/356 (35.11%), Postives = 195/356 (54.78%), Query Frame = 0

Query:   35 PDVSLLLNAHSPALPRPTSPAVHYPPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGA--EAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILW------ADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLI 382
            PD  ++ N+ S   P P+S        S ++  C +CGD++SGKHYG ++CEGCK FFKR VR+ L + CR  K+C +D+  RN+CQ+CR+ KCL  GM++EAVQ+ R           + +    +TG+  L   +++  + A  + + Q G      S+++      G D       ++L   +EWA++IP F +L+I D++ L+R  W+EL +   +   M      L       A      R  A +  +     RV  E V K+K +++D AE  CL+AI+LF+ D  GL  D  L +E  +EK    L++YC+ +H  +PSRF KLLLRLP+LR++    +E LFF +L+
Sbjct:   47 PDHHIVNNSSSLTAPSPSSGTN-----SSTEILCVVCGDKSSGKHYGQFTCEGCKSFFKRCVRRSLTFQCRSKKSCPVDQHHRNQCQHCRFKKCLNMGMKKEAVQKGRTTTTSAPIFNYSNDLFSPNTGSSYLSTYISL-LLRAEPYTTSQYGQLQMAASNNII-----GIDNICEFAARLLFSAIEWARNIPGFPELQITDQVGLLRMVWSELFVLNASQCHMPLHVAPLLVAXGLHASPLAADRXVAFMDHI-----RVFQEQVEKLKALQVDAAEXACLKAIVLFSTDPPGLT-DITL-IEQLQEKSQCALDDYCKIHHPTKPSRFGKLLLRLPSLRTVSSAVIEQLFFIRLV 384

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BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000007361 (supercontig:LSalAtl2s:LSalAtl2s418:374353:376789:1 gene:EMLSAG00000007361 transcript:EMLSAT00000007361 description:"maker-LSalAtl2s418-augustus-gene-3.13")

HSP 1 Score: 221.09 bits (562), Expect = 6.764e-67
Identity = 119/340 (35.00%), Postives = 191/340 (56.18%), Query Frame = 0

Query:   59 PPLS-GSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQ-------GGAFSRQ----ESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRE------NAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYK 380
            PPL+  +   C++CGDRA+GKHYG  SC+GCKGFF+R+VRKE VY CR+N+ACI++K +RN C+YCR   C+  GM++ AVQ ER+R   +   +A+ + S+        E+ +  ++ A+ + ++       GG  +      E + L        +    + ++ L  LVEWAKHI  F +L ++D+++L+RA   E L+ G A RSMN    +L  +   I ++       +  A V  I  RV+ ELV   K + +D AEL CL+AI+ F+P  +GL      Q++  R +++  LE+Y          RF ++LL + +L++I  + +E + F K
Sbjct:  141 PPLAPNNIQNCAVCGDRATGKHYGAASCDGCKGFFRRSVRKERVYGCRQNRACIVNKDKRNNCRYCRLKMCIKAGMKKSAVQNERDRISCRKKTSAKDMNSA-------NELTVTALLNADKVGQKSLLNSIVGGNINTNNFITEENVLANKQLASIEDIGHSMKEQLIVLVEWAKHIKAFCELSVDDQVRLLRAHSGEHLLMGVAKRSMNLNGILLLGNDMIIVKDERKWNSESQDAAVRSIGVRVMNELVDTFKRINIDDAELACLKAIVFFDPHVRGLHD--VEQIKKLRSQIHTNLEDYINDRLYESRGRFGEILLSIQSLQAITWQMIEQISFAK 471

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BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000009941 (supercontig:LSalAtl2s:LSalAtl2s649:484085:485655:-1 gene:EMLSAG00000009941 transcript:EMLSAT00000009941 description:"maker-LSalAtl2s649-snap-gene-4.11")

HSP 1 Score: 201.445 bits (511), Expect = 3.567e-61
Identity = 131/381 (34.38%), Postives = 184/381 (48.29%), Query Frame = 0

Query:   20 LAGLAHPPQSPLELKPDVSLLLNAH------SPALPRPTSPAV-HYPP--LSGSKHF-CSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQE----SDDLQAHMPG----GFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLI 382
            +  L  P  SP  L    + L++ H      SPA+      ++ H  P  LS S    C +CGD++SGKHYG ++CEGCK FFKR+VR+ L Y CR +K C +D+  RN+CQ+CR  KC   GMRREAVQ        +G     P     G  GLG   + D +    ++S       R E    S   Q  MP     G +       ++L   VEW + IP F +L++ D++ L+R  W+EL                                           E V K+K + +D AE  C++AI+LF  DA GL       +E  +EK    LEEYCR+ + N+P+RF KLLLRLP+LR++    +E LFF +L+
Sbjct:   25 ITSLNPPSASPDSLVGSTTHLIHHHISSDSISPAISSGIVASIEHAKPSELSESSDINCVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYQCRGSKNCPVDQHHRNQCQHCRLKKCFKMGMRREAVQ--------RGRVPPTP----QGVFGLG--FSSDPLSGTTYLSSYISMLLRAEPYPTSRYGQMPMPTNGMIGIENICEFAARLLFSAVEWTRSIPGFPELQVTDQVALLRLVWSELF------------------------------------------EQVEKLKGLHVDSAEYVCMKAIVLFTTDAPGLCDMQV--IEQLQEKSQCALEEYCRSQYPNQPTRFGKLLLRLPSLRTVSSTVIEQLFFVRLV 347

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BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000009940 (supercontig:LSalAtl2s:LSalAtl2s649:353131:422335:-1 gene:EMLSAG00000009940 transcript:EMLSAT00000009940 description:"maker-LSalAtl2s649-augustus-gene-4.7")

HSP 1 Score: 203.371 bits (516), Expect = 1.699e-58
Identity = 114/334 (34.13%), Postives = 176/334 (52.69%), Query Frame = 0

Query:   68 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGA--------------EAAEPVESSTGAGGLGGEMAIDRIVAAEHISE--QGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKR---ENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLI 382
            C +CGD++SGKHYG ++CEGCK FFKR+VR+ L Y CR +++C ID+  RN+CQ+CR  KC+  GMR+EAVQ  R     +                       +   +G        +    + +IS   +   +S      LQ     G D       ++L   +EWA++IP F +L + D++ L+R  W+EL +   +  +M      L A +         +  +A +  I  R+  E V K+K + +D AE  C++A++LF  DA GL +     +E  +EK    LE+YCR ++ N+PSRF KLLLRLP+LR++    +E LFF +L+
Sbjct:  434 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRALTYQCRGSRSCPIDQHHRNQCQHCRLKKCIKMGMRKEAVQRGRIPASQQNVLPFGFNGDRSSNVGSGGGSGGTGGSSGSSSSSNNSNSNYLSSYISMLLRAEPYSTTRYGQLQMSNMVGIDNICEFAARLLFSAIEWARNIPGFPELPVTDQVALLRLVWSELFVLNASQCNMPLHIAPLLAAAGLHANPMPADKVVAFMDQI--RIFQEQVEKLKGLHVDPAEYSCMKAVVLFTTDACGLSESN--MIEQLQEKSQCALEDYCRNHYPNQPSRFGKLLLRLPSLRTVSSGVIEQLFFVRLV 763

HSP 2 Score: 121.709 bits (304), Expect = 3.815e-30
Identity = 66/187 (35.29%), Postives = 101/187 (54.01%), Query Frame = 0

Query:  202 GFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQF------IKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLI 382
            G D       ++L   +EWA++IP F DL I D++ L+R  W+EL +   +  +M      L A +          R  A++  +     R+  E V K+K + +D AE  C++AI+LF  DA GL       +E  +EK    LEEYCRT + N+P+RF +LLLR P+LR++    +E LFF +L+
Sbjct:  156 GIDNICEFAARLLFSAIEWARNIPGFPDLPITDQVALLRLVWSELFVLNASQCNMPIHIAPLLAAAGLHASPMAADRVVAYMDHI-----RIFXEQVEKLKSIHVDSAEYSCMKAIVLFTTDAPGLTDVSV--IEQLQEKSQCALEEYCRTQYPNQPTRFGRLLLRFPSLRTVSSTVIEQLFFIRLV 335

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BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000004451 (supercontig:LSalAtl2s:LSalAtl2s231:945915:949068:1 gene:EMLSAG00000004451 transcript:EMLSAT00000004451 description:"snap_masked-LSalAtl2s231-processed-gene-9.18")

HSP 1 Score: 159.458 bits (402), Expect = 5.408e-44
Identity = 102/375 (27.20%), Postives = 177/375 (47.20%), Query Frame = 0

Query:   32 ELKPDVSLLLNAHSPALPRPTSPAVHYPPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVES----STGAGGL----------------------GGEMAIDRIVAAEHISEQGGAF-------SRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNP-----DAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSI 368
            +++ D  L + +HS       +  +    L  S   C +CGD+ SG HYG++SCE CKGFFKRTV+ +  Y C     C +    R +C  CR+ KCL  GM+ EA++E+R RGG    + +  + +    ST +  +                      G  + +  I++ EH+     +        S   +D  Q               K L +LV W K +P F ++ ++D+I L+   W ELL+  C ++S++    I  +  + +  E+A   GV +  +++L     +++ +K+D  E   L+ I+L        DA GL++    QV   +E+V   L+ Y   ++ + P++F +LLLR+P L+ +
Sbjct:  121 KIEEDPQLTIESHSSYSTHLNTSGISRQQLINSP--CPVCGDKISGFHYGIFSCESCKGFFKRTVQNKKNYVCLRGSQCPVTISTRKKCPACRFDKCLNIGMKLEAIREDRTRGGRSTYQCSYNLPTTGVCSTNSTTIPTIKRESRGDDHNTETKVNQSSGIPVLLHEIMSVEHLWFWSTSMPSLSLNNSSSNTDTSQESPSNPVQTLTLLADKRLYKLVRWCKSLPLFKNILVDDQITLLINAWCELLVFSCCYKSVDSPGFIRLSQDKSLNLESAKSLGVNECIEKML-NFSDQLRRLKVDHYEYVSLKVILLLTSAPLYVDATGLKE--VDQVRESQEQVVQALQSYTNFHYPSMPNKFGELLLRMPELQRV 490

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BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000013004 (supercontig:LSalAtl2s:LSalAtl2s98:942409:953748:1 gene:EMLSAG00000013004 transcript:EMLSAT00000013004 description:"augustus_masked-LSalAtl2s98-processed-gene-9.1")

HSP 1 Score: 144.436 bits (363), Expect = 7.874e-38
Identity = 99/335 (29.55%), Postives = 162/335 (48.36%), Query Frame = 0

Query:   67 FCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKML------------------QQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFN-PDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSR--FAKLLLRLPALRSIGLKCVEHLFFYK 380
             C++CGD A+ +HYGV +CEGCKGFFKRTV+K   Y C  +K C +DKR+RNRCQ+CR+ KCLA GM +E V+ +  + G +G   ++P   +         + I  +V A HI           + D    +    + ++ +K  ML                  + +  + + IP  ++L + DR  L +    EL +   A+RS    D   + +   +          GD  + +  E    +  M++D +   CL  +IL N  D +    DP  +VES   K+  +L+++   N E +       ++L RLPALRS+ ++ ++ +FF K
Sbjct:  408 LCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLADKNCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLK-GRRGRLPSKPKSPTESPPSPPVSL-ITALVRA-HIDTS----PDMNNLDYSQFVETSIEDERDSKENMLANEAIKIGQFYHVLTSSIEVIRNFCERIPGISELSLNDRDLLFQTSCLELFVLRLAYRSNPDSDRYTFCNGVVLHVSQCEQT-FGDWLNGI-NEFARGLHSMELDISAFSCLCGLILVNGKDERHGLSDPK-KVESIENKIINSLKDHVTYNPEAQKKEHYMTRILDRLPALRSLSMQGLQRIFFLK 732

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BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000005090 (supercontig:LSalAtl2s:LSalAtl2s269:306853:308464:-1 gene:EMLSAG00000005090 transcript:EMLSAT00000005090 description:"augustus_masked-LSalAtl2s269-processed-gene-3.0")

HSP 1 Score: 135.576 bits (340), Expect = 2.381e-35
Identity = 121/425 (28.47%), Postives = 172/425 (40.47%), Query Frame = 0

Query:    7 HSLMEGGVPPTPPLA-GLAHP--PQSPLELKPDVSLLLNAHSPALPRPTSPAVHYPPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEER--------------------------NRGGHKGAEAAEPVE-----SSTGAGGLGGEMAIDRIVAAE---------------HISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNH-ENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKL 381
            + L   G  P+ PL  GL HP  P +P       S ++          + PA         +  C +CGDRASG HY   +CEGCKGFF+R++ K   Y C+ N  C ID   R +CQ CR  KC ATGMR E V  ER                          N  G  G+ + +        SST       E  I+R+V  +               H+       S  ESD L  HM              +Q +VE++KH+P F +L  +D+I L++   +E+++   A R   + D I++A +    +EN   AG+G+         + +MKE K                            +VE  +E     L+ Y   N  +N+   FAKLL  L  LRS+G+   E  F  KL
Sbjct:  118 YYLNNSGESPSSPLENGLRHPNAPLTPTGAVQQYSQMVENERKKKGSSSRPA---------EELCLVCGDRASGYHYNALACEGCKGFFRRSITKNSNYTCKWNGDCEIDMYMRRKCQACRLKKCYATGMRAECVVPERTCIQKRQAKAAAAAAAXXDTTVDPKSNNNGKNGSISIDMASFPKRLSSTKPLKPEEEELINRLVYFQEEYEHPSEADLNRVYHVPMHSTNSSESESDRLFRHMTEM-------TILTVQLIVEFSKHLPGFQNLCRDDQINLLKGCSSEVMMLRGARRYDAESDSIVYATNYPFTKENYAKAGLGNDELFRFCRAMSRMKEPK----------------------------RVEKIQEIYVDALQAYVMANRKKNQMVTFAKLLYVLTELRSLGINNSELCFSLKL 498

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BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000008071 (supercontig:LSalAtl2s:LSalAtl2s47:304551:317770:1 gene:EMLSAG00000008071 transcript:EMLSAT00000008071 description:"snap_masked-LSalAtl2s47-processed-gene-3.10")

HSP 1 Score: 128.257 bits (321), Expect = 6.768e-33
Identity = 74/225 (32.89%), Postives = 112/225 (49.78%), Query Frame = 0

Query:   63 GSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRV 287
            G +  C +CGD ASG HYGV SCE CK FFKRT++  + Y    +  C I+KR+R  CQ CR+ KCL  GM +E V+ +R RGG +       +ESS        +   D  +       +  AF       L  +             + L   +EWAK IP F++L I D++KL+++ W+E+L+    +RS+     I   ++  +    A L G+ + F +V
Sbjct:  266 GQRRTCLVCGDIASGFHYGVSSCEACKAFFKRTIQGNIEYTXPASNECEINKRRRKACQACRFQKCLRMGMLKEGVRLDRVRGGRQKYRRM--IESSPYIQPPPKKTLEDNKLLQVLRHCEPEAFLVNMDMTLPNYKIRTISTLSDFYNRELIGTIEWAKQIPGFSNLTINDQMKLLQSSWSEILVLSLVYRSLPYNGKISLTNNFSLDESQARLCGLSEFFFQV 488

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BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000008902 (supercontig:LSalAtl2s:LSalAtl2s554:572309:581835:1 gene:EMLSAG00000008902 transcript:EMLSAT00000008902 description:"maker-LSalAtl2s554-snap-gene-5.6")

HSP 1 Score: 118.242 bits (295), Expect = 3.535e-29
Identity = 47/84 (55.95%), Postives = 62/84 (73.81%), Query Frame = 0

Query:   63 GSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGG 146
            G +  C +CGD+ SG HYG+ +CE CKGFFKRTV+ + VY C  +++C+IDK QR RC YCR+ KCL  GM+ EAV+ +R RGG
Sbjct:  181 GMEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVADRSCVIDKTQRKRCPYCRFQKCLDVGMKLEAVRHDRMRGG 264

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BLAST of retinoid x receptor vs. SwissProt
Match: gi|1350911|sp|P28702.2|RXRB_HUMAN (RecName: Full=Retinoic acid receptor RXR-beta; AltName: Full=Nuclear receptor subfamily 2 group B member 2; AltName: Full=Retinoid X receptor beta)

HSP 1 Score: 371.703 bits (953), Expect = 9.214e-124
Identity = 193/326 (59.20%), Postives = 230/326 (70.55%), Query Frame = 0

Query:   65 KHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKR------KMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            K  C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RK+L Y+CR+NK C +DKRQRNRCQYCRY KCLATGM+REAVQEER RG  K  +      +         EM +DRI+ AE   EQ    S Q  +        G   + P         K L  LVEWAK IPHF+ L ++D++ L+RAGWNELLIA  + RS++  DGIL A    + R +AH AGVG IFDRVL ELV KM++M+MDK ELGCLRAIILFNPDAKGL  +P+ +VE  REKVYA+LE YC+  +  +  RFAKLLLRLPALRSIGLKC+EHLFF+KLI D
Sbjct:  202 KRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPE-------EMPVDRILEAELAVEQK---SDQGVEGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLS-NPS-EVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 515

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BLAST of retinoid x receptor vs. SwissProt
Match: gi|1710720|sp|P49743.1|RXRB_RAT (RecName: Full=Retinoic acid receptor RXR-beta; AltName: Full=Nuclear receptor coregulator 1; AltName: Full=Nuclear receptor subfamily 2 group B member 2; AltName: Full=Retinoid X receptor beta)

HSP 1 Score: 367.081 bits (941), Expect = 6.201e-123
Identity = 195/326 (59.82%), Postives = 231/326 (70.86%), Query Frame = 0

Query:   65 KHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKR------KMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            K  C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RK+L Y+CR+NK C +DKRQRNRCQYCRY KCLATGM+REAVQEER RG  K  +      +         EM +DRI+ AE   EQ    S Q  +   A   GG   + P         K L  LVEWAK IPHF+ L ++D++ L+RAGWNELLIA  + RS++  DGIL A    + R +AH AGVG IFDRVL ELV KM++M+MDK ELGCLRAIILFNPDAKGL  +P  +VE  REKVYA+LE YC+  +  +  RFAKLLLRLPALRSIGLKC+EHLFF+KLI D
Sbjct:  127 KRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEERQRGKDKDGDGDGAGGAPE-------EMPVDRILEAELAVEQK---SDQGVEGPGATGGGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLS-NPG-EVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 440

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BLAST of retinoid x receptor vs. SwissProt
Match: gi|1350912|sp|P28704.2|RXRB_MOUSE (RecName: Full=Retinoic acid receptor RXR-beta; AltName: Full=MHC class I regulatory element-binding protein H-2RIIBP; AltName: Full=Nuclear receptor subfamily 2 group B member 2; AltName: Full=Retinoid X receptor beta)

HSP 1 Score: 365.925 bits (938), Expect = 9.350e-122
Identity = 195/326 (59.82%), Postives = 231/326 (70.86%), Query Frame = 0

Query:   65 KHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKR------KMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            K  C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RK+L Y+CR+NK C +DKRQRNRCQYCRY KCLATGM+REAVQEER RG  K  +      +         EM +DRI+ AE   EQ    S Q  +   A   GG   + P         K L  LVEWAK IPHF+ L ++D++ L+RAGWNELLIA  + RS++  DGIL A    + R +AH AGVG IFDRVL ELV KM++M+MDK ELGCLRAIILFNPDAKGL  +P  +VE  REKVYA+LE YC+  +  +  RFAKLLLRLPALRSIGLKC+EHLFF+KLI D
Sbjct:  189 KRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEERQRGKDKDGDGDGAGGAPE-------EMPVDRILEAELAVEQK---SDQGVEGPGATGGGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLS-NPG-EVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 502

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BLAST of retinoid x receptor vs. SwissProt
Match: gi|52783418|sp|Q90417.1|RXRBB_DANRE (RecName: Full=Retinoic acid receptor RXR-beta-B; AltName: Full=Nuclear receptor subfamily 2 group B member 2-B; AltName: Full=Retinoic acid receptor RXR-delta; AltName: Full=Retinoid X receptor beta-B; AltName: Full=Retinoid X receptor delta)

HSP 1 Score: 361.688 bits (927), Expect = 2.562e-121
Identity = 198/401 (49.38%), Postives = 253/401 (63.09%), Query Frame = 0

Query:    6 AHSLMEGGVPPTPPLAGLAHPPQSPLELKPDVSLLLNAHSPALPRPTSPAVHYPPLSGS------KHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPN----KRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWAD--------------SQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLI 382
            + S+   GVP TP    + + P S  ++   +S+    H+ +      P      +SGS      K  C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRK+L Y CR+NK C++DKRQRNRCQYCRY KCLA GM+REAVQEER +   +  +     E S+ A     EM +++I+ AE   E           DL +   G  +    N      K L  LVEWAK +PHF+D+ ++D++ L+RAGWNELLIA  + RS++ +D IL A                 F  RE++H A VG +FDRVL ELV KM++M+MDK ELGCLRAI+LFNPDAKGL      +VE  REKVYA+LE YC+  + ++  RFAKLLLRLPALRSIGLKC+EHLFF+KLI
Sbjct:   26 SSSIGSPGVPGTP---SIGYGPISNSQINSSMSVS-RLHAVSSSDDVKPPFGLKSVSGSGPMLSQKRMCAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKECLVDKRQRNRCQYCRYQKCLAMGMKREAVQEERQKNKERDGD----YECSSSA---NEEMPVEKILEAETAVEH--------RTDLHSDATGSPNDPVTNICQAADKQLFTLVEWAKRVPHFSDVPLDDQVILLRAGWNELLIAAFSHRSISVKDEILLATGLHVPKESTHNLGVEAFFDRESSHSAEVGALFDRVLTELVCKMRDMQMDKTELGCLRAIVLFNPDAKGLTSSS--EVELLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLI 405

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BLAST of retinoid x receptor vs. SwissProt
Match: gi|18202151|sp|O76202.1|USP_CHOFU (RecName: Full=Protein ultraspiracle homolog; AltName: Full=Nuclear receptor subfamily 2 group B member 4)

HSP 1 Score: 338.191 bits (866), Expect = 1.690e-111
Identity = 189/393 (48.09%), Postives = 240/393 (61.07%), Query Frame = 0

Query:   27 PQSPLELKPDVSLLLNAHSPALPRPTSPAVHYPP---LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKR-----------KMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSM-----NQEDG-----------ILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKDDGPNG 389
            P SP E+KPD ++L      A   P     +YPP   LSGSKH CSICGDRASGKHYGVYSCEGCKGFFKRTVRK+L YACRE + CIIDKRQRNRCQYCRY KCLA GM+REAVQEER R   +GAE A P  S      +  E++I+R+   E +           S++ Q    G      P  R           K +  LV WA+ IPHF  L+++D++ LI+A WNELL+   A+RSM      +E+G           +       + R +A  AGVG IFDRVL EL  KM+ ++MD+AE   L+AI+L NPD KGL+     +V+  REK+++ L++YCR +  NE  RFA LLLRLPALRSI LK  EHL+F+ L+ +   +G
Sbjct:   77 PMSPPEMKPDTAMLDGLRDDATSPPNFK--NYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREERNCIIDKRQRNRCQYCRYQKCLACGMKREAVQEERQRNA-RGAEDAHPSSSVQ----VSDELSIERLTEMESLVA-------DPSEEFQFLRVGPDSNVPPRYRAPVSSLCQIGNKQIAALVVWARDIPHFGQLELDDQVVLIKASWNELLLFAIAWRSMEYLEDERENGDGTRSTTQPQLMCLMPGMTLHRNSAQQAGVGAIFDRVLSELSLKMRTLRMDQAEYVALKAIVLLNPDVKGLKNRQ--EVDVLREKMFSCLDDYCRRSRSNEEGRFASLLLRLPALRSISLKSFEHLYFFHLVAEGSISG 453

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BLAST of retinoid x receptor vs. nr
Match: gi|657600368|gb|AID52845.1| (ultraspiracle [Tigriopus japonicus])

HSP 1 Score: 686.026 bits (1769), Expect = 0.000e+0
Identity = 346/436 (79.36%), Postives = 366/436 (83.94%), Query Frame = 0

Query:    7 HSLMEGGVPPTPPLAGLAHP------PQSPLELKPDVSLLLNAHSPA------------LPRPTSPAVHYPPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAE-----------PVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKDDGPNGNG-ADVNDVAAQSLELFIKEILEE 412
            + LME    P     G   P      PQSPLELKPDVS+LLNA SPA             PRP SP+V+YPPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKEL YACRENK CIIDKRQRNRCQYCRYMKCLA GMRREAVQEERNR G   +  A             VESST  G    +M I+RI+ AE+ISE GGAFSR++S+DLQAHM GGF+GDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMN+E+GILWADSQFIKRENAHLAGVGDIFDRVLVELV KM+EMKMDKAELGCLRAIILFNPDAKGLEQ PAL+VE+FREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKDDGPN NG ADVNDVAAQSL++FIKEILEE
Sbjct:   14 NGLMESAGVPAAASVGANTPSNAFGNPQSPLELKPDVSMLLNAPSPASSVSGGGLANPQTPRPGSPSVNYPPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELTYACRENKDCIIDKRQRNRCQYCRYMKCLANGMRREAVQEERNRSGSSASGGANNGGGTGVGKEGEVESSTPGGQTSSDMPIERIIEAENISELGGAFSRKDSEDLQAHMTGGFEGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNEENGILWADSQFIKRENAHLAGVGDIFDRVLVELVQKMREMKMDKAELGCLRAIILFNPDAKGLEQGPALEVETFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKDDGPNSNGAADVNDVAAQSLDIFIKEILEE 449

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BLAST of retinoid x receptor vs. nr
Match: gi|662179194|gb|AIE45497.1| (retinoid X receptor [Lepeophtheirus salmonis])

HSP 1 Score: 467.233 bits (1201), Expect = 3.806e-160
Identity = 257/451 (56.98%), Postives = 301/451 (66.74%), Query Frame = 0

Query:   14 VPPTPP-LAGLAHPPQSPLELKPDVSLLLNAHSPALPRPTS----------------PAVH-------------YPP---LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRG------------GHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISE---QGGAFSRQESDDLQAHMPGGFDGDQPN----KRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKDDGPNGNGADVNDVAAQSLELFIKEILEE 412
             PPTP  L    + PQSP++LKPD SLLL   S     P S                P VH             YPP   LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKEL YACREN+ C+IDKRQRNRCQYCRYMKCL TGM+REAVQEER+RG             +  +  +E VESST  G  GG+M I+RI+ AE + E       F   +++   +      D +       K++++ QL+EWAK +PHF++LK+ED++ LIR GWNELL+AG AFRS+   DGIL  +   + RENAH AGVG IFDRVLVEL+ KMKEM+MDKAELGCLRAIILFNPDAKGL      +VE+ REKVYATLEEY R+ HENEPSRFAKLLLRLPALRSIGLKC+EHLFFYKL+ D   +GN           LE FI+ +LEE
Sbjct:    4 TPPTPNHLLNPGYMPQSPVDLKPDASLLLTTLSNPQSTPPSSAYPVGESMYGSQAPHPGVHGHARSTQSPPNNTYPPNHPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELTYACRENRDCVIDKRQRNRCQYCRYMKCLDTGMKREAVQEERHRGSNGPNHNNNNNNNNNNSRNSEEVESSTSGG--GGDMPIERIIEAEDVGEMKQDTSEFLLLDNNSSMSGGGSIGDMEIQRFGLAKKRIIHQLIEWAKLVPHFSELKVEDQVTLIRGGWNELLVAGLAFRSIKLNDGILLGNGTIVTRENAHEAGVGHIFDRVLVELIAKMKEMQMDKAELGCLRAIILFNPDAKGLSD--VTKVENLREKVYATLEEYTRSVHENEPSRFAKLLLRLPALRSIGLKCLEHLFFYKLVGDYLNDGN----------PLEKFIQSLLEE 440

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BLAST of retinoid x receptor vs. nr
Match: gi|1110961970|gb|APG80612.1| (ultraspiracle [Paracyclopina nana])

HSP 1 Score: 429.869 bits (1104), Expect = 1.569e-145
Identity = 233/427 (54.57%), Postives = 282/427 (66.04%), Query Frame = 0

Query:   21 AGLAHPPQSPLELKPDVSLLLNAHSPA--------------LPRPTSPAVHYPP---LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLG-----------------GEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMN-QEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKDDGPNGNGADVNDVAAQSLELFIKEILEE 412
             G    P SP E KPD   L+  +SP               L R +SP  +YPP   L+ SKH C+ICGD+ASGKHYGVYSCEGCKGFFKRTVRKEL YACREN+ CIIDKRQRNRCQYCRYMKCL TGM+REAVQEER+RG      A   V  STGA  LG                  +M +DRI+ ++  SE+ G    +      AH      G  PN   +  Q+VE+AK++P F DL ++ +I LI++GWNEL+I G A+RSM+  E+GIL    + I  E+AH AG+G+IFDRVL+ELVGKM+EMKM+K EL CLRAI+LFNPDA GL  D + QVE+ REKVYATLEE+CRT HE + SRFAKLLLRLPALRSIGLKC EH FF+KL+++D       D N     ++E FIK  LEE
Sbjct:   15 GGYDDQPNSPAEQKPDPMALMRGYSPGGSPGSTMTAGSPGGLVRSSSP--NYPPNHPLANSKHLCTICGDKASGKHYGVYSCEGCKGFFKRTVRKELSYACRENRNCIIDKRQRNRCQYCRYMKCLQTGMKREAVQEERSRGKESTGSAGGQV--STGAKELGQVANGIKEELPETTCTNSDMPLDRILESQVKSEKAG----ENPGAHPAHQAFNATGGDPNS-SIFAQIVEFAKNLPLFPDLSLDTQITLIKSGWNELMILGAAYRSMSLNEEGILMGQGKIITMEDAHRAGLGEIFDRVLIELVGKMEEMKMEKCELACLRAIVLFNPDAPGLTNDASNQVETLREKVYATLEEHCRTRHEKDTSRFAKLLLRLPALRSIGLKCAEHHFFFKLVREDRTMFEMDDGN----SAMETFIKNFLEE 428

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BLAST of retinoid x receptor vs. nr
Match: gi|105872963|gb|ABF74729.1| (retinoid X receptor-like protein [Daphnia magna] >gi|131665089|dbj|BAF49028.1| ultraspiracle [Daphnia magna] >gi|321453064|gb|EFX64341.1| hypothetical protein DAPPUDRAFT_219609 [Daphnia pulex] >gi|1022761776|gb|KZS07689.1| Retinoic acid receptor RXR-alpha-A [Daphnia magna])

HSP 1 Score: 422.165 bits (1084), Expect = 5.164e-143
Identity = 224/393 (57.00%), Postives = 266/393 (67.68%), Query Frame = 0

Query:   27 PQSPLELKPDVSLLLNAHSP------------------ALPRPT--------------SPAVHYPP---LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            PQSP+++KPD + L+   SP                  +LP+P+              S + HYPP   LS SKH CSICGDRASGKHYGVYSCEGCKGFFKRTVRK+L YACRE++ C+IDKRQRNRCQYCRY KCL  GM+REAVQEER R   KG      ++    +GG  G+M IDR++ AE   E         +     ++    D       K L QLVEWAKHIPHFT+L ++D++ L+RAGWNELLIA  + RS+  +DGI+ A    I R +AH AGVG IFDRVL ELV KM+EMK+D AELGCLRAIILFNPD KGL+     QVE+ REKVYATLEEY RTN+ +EP RFAKLLLRLPALRSIGLKC+EHLFF+KLI D
Sbjct:    6 PQSPIDMKPDTATLMAGFSPGSVGGGNSPTSPRSGLGFSLPQPSFTIGHSGYLNNSNGSKSGHYPPNHPLSNSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDRQCLIDKRQRNRCQYCRYQKCLQMGMKREAVQEERQRNKEKGE-----MDMDATSGG-QGDMPIDRVLEAEKRVECKDEPQVNSATAALGNICAATD-------KQLFQLVEWAKHIPHFTELPLDDQVVLLRAGWNELLIAAFSHRSVGVKDGIVLATGLVIHRNSAHQAGVGSIFDRVLTELVSKMREMKLDLAELGCLRAIILFNPDPKGLKS--VSQVEALREKVYATLEEYTRTNYADEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 383

[Close]

BLAST of retinoid x receptor vs. nr
Match: gi|314955486|gb|ADT64884.1| (retinoid X receptor [Gryllus firmus])

HSP 1 Score: 420.624 bits (1080), Expect = 2.905e-142
Identity = 223/379 (58.84%), Postives = 263/379 (69.39%), Query Frame = 0

Query:   27 PQSPLELKPDVSLLLNAHSPALPR------------------PTSPAVHYPP---LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            PQSPL++KPD + L+++ S +                      +S ++ YPP   LSGSKH CSICGDRASGKHYGVYSCEGCKGFFKRTVRKEL YACRE K CIIDKRQRNRCQYCRY KCL  GM+REAVQEER R   KG EA   VES++    L  +M ++RI+ AE   E     + +  + +             NK+  L QLVEWAKHIPHFT L +ED++ L+RAGWNELLIA  + RSM  +DGI+ A    I R +AH AGVG IFDRVL ELV KM+EMKMDK ELGCLR++ILFNPD +GL+     +VE  REKVYA LEEY RT H +EP RFAKLLLRLPALRSIGLKC+EHLFF++LI D
Sbjct:   18 PQSPLDMKPDTASLISSGSFSPTGGGGGGGGGGPNSPTGGQGKSSSSIQYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELSYACREEKNCIIDKRQRNRCQYCRYQKCLTMGMKREAVQEERQRT--KG-EAQNEVESTS---SLHADMPVERILEAEKRVEYKTENNMEFENTMNNICQAANICQATNKQ--LFQLVEWAKHIPHFTSLPLEDQVLLLRAGWNELLIAAFSHRSMEVKDGIVLATGLTIHRNSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRSVILFNPDVRGLKSQQ--EVEMLREKVYAALEEYTRTTHPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIGD 386

[Close]

BLAST of retinoid x receptor vs. nr
Match: gi|314955556|gb|ADT64885.1| (retinoid X receptor [Gryllus firmus])

HSP 1 Score: 420.624 bits (1080), Expect = 3.001e-142
Identity = 226/396 (57.07%), Postives = 267/396 (67.42%), Query Frame = 0

Query:   10 MEGGVPPTPPLAGLAHPPQSPLELKPDVSLLLNAHSPALPR------------------PTSPAVHYPP---LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            MEG          +   PQSPL++KPD + L+++ S +                      +S ++ YPP   LSGSKH CSICGDRASGKHYGVYSCEGCKGFFKRTVRKEL YACRE K CIIDKRQRNRCQYCRY KCL  GM+REAVQEER R   KG EA   VES++    L  +M ++RI+ AE   E     + +  + +             NK+  L QLVEWAKHIPHFT L +ED++ L+RAGWNELLIA  + RSM  +DGI+ A    I R +AH AGVG IFDRVL ELV KM+EMKMDK ELGCLR++ILFNPD +GL+     +VE  REKVYA LEEY RT H +EP RFAKLLLRLPALRSIGLKC+EHLFF++LI D
Sbjct:    1 MEGSAGGITLDGSIMGGPQSPLDMKPDTASLISSGSFSPTGGGGGGGGGGPNSPTGGQGKSSSSIQYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELSYACREEKNCIIDKRQRNRCQYCRYQKCLTMGMKREAVQEERQRT--KG-EAQNEVESTS---SLHADMPVERILEAEKRVEYKTENNMEFENTMNNICQAANICQATNKQ--LFQLVEWAKHIPHFTSLPLEDQVLLLRAGWNELLIAAFSHRSMEVKDGIVLATGLTIHRNSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRSVILFNPDVRGLKSQQ--EVEMLREKVYAALEEYTRTTHPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIGD 386

[Close]

BLAST of retinoid x receptor vs. nr
Match: gi|302202572|gb|ADL09403.1| (retinoid X receptor [Gryllus firmus])

HSP 1 Score: 418.698 bits (1075), Expect = 1.381e-141
Identity = 222/379 (58.58%), Postives = 263/379 (69.39%), Query Frame = 0

Query:   27 PQSPLELKPDVSLLLNAHSPALPR------------------PTSPAVHYPP---LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            PQSPL++KPD + L+++ S +                      +S ++ YPP   LSGSKH CSICGDRASGKHYGVYSCEGCKGFFKRTVRK+L YACRE K CIIDKRQRNRCQYCRY KCL  GM+REAVQEER R   KG EA   VES++    L  +M ++RI+ AE   E     + +  + +             NK+  L QLVEWAKHIPHFT L +ED++ L+RAGWNELLIA  + RSM  +DGI+ A    I R +AH AGVG IFDRVL ELV KM+EMKMDK ELGCLR++ILFNPD +GL+     +VE  REKVYA LEEY RT H +EP RFAKLLLRLPALRSIGLKC+EHLFF++LI D
Sbjct:   18 PQSPLDMKPDTASLISSGSFSPTGGGGGGGGGGPNSPTGGQGKSSSSIQYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKNCIIDKRQRNRCQYCRYQKCLTMGMKREAVQEERQRT--KG-EAQNEVESTS---SLHADMPVERILEAEKRVEYKTENNMEFENTMNNICQAANICQATNKQ--LFQLVEWAKHIPHFTSLPLEDQVLLLRAGWNELLIAAFSHRSMEVKDGIVLATGLTIHRNSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRSVILFNPDVRGLKSQQ--EVEMLREKVYAALEEYTRTTHPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIGD 386

[Close]

BLAST of retinoid x receptor vs. nr
Match: gi|227150229|gb|ACP19739.1| (putative retinoid X receptor [Calanus finmarchicus])

HSP 1 Score: 416.001 bits (1068), Expect = 1.681e-140
Identity = 227/395 (57.47%), Postives = 270/395 (68.35%), Query Frame = 0

Query:   27 PQSPLELKPDVSLLLNAH-SPALPR-PTSPAVH------------------YPP---LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAA-EPVESSTGAGGLG-GEMAIDRIVAAEHISEQGGAFS-RQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKDDGPNGNGADVN 395
            PQSP+E+KPD SLL   + SP + + PTS +                    YPP   LSG+KH CSICGDRASGKHYGVYSCEGCKGFFKRTVRKEL YACRE+K C+IDKRQRNRCQ+CRY KC+A GM+REAVQEER RG         + VE S     LG G+M  DRI+ AE I ++        E DD+QA      +       K L  LVEWAK IPHFT L ++D++ L+R GWNEL+IAG + RS+  ++GI  A    + RENAH +GVG IFDRVLVELV KM EM MDK ELG LRAI+L+NPD KGL +D A +VE  RE+VYA+LEEY R+ HENE  RFAKLLLRLPALRSIGLKC+EHLFF+K+I   G +G G D +
Sbjct:   17 PQSPMEMKPDTSLLTTVNNSPMMSQSPTSASTSFMGFGSPGGGQKSPLPGTYPPSHPLSGAKHMCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELSYACREDKQCLIDKRQRNRCQFCRYNKCMAMGMKREAVQEERQRGSRGDKNGGDDEVEGSV----LGPGDMPTDRILEAERICDKHEREQLTNEGDDIQAKFKFAAE-------KQLTSLVEWAKQIPHFTSLCLDDQVALLRGGWNELMIAGFSHRSIGIQNGIQLASGVVVTRENAHTSGVGAIFDRVLVELVSKMTEMCMDKTELGSLRAIVLYNPDVKGL-KDIA-RVEQLRERVYASLEEYTRSTHENETGRFAKLLLRLPALRSIGLKCMEHLFFFKII---GESGAGLDAH 395

[Close]

BLAST of retinoid x receptor vs. nr
Match: gi|314955738|gb|ADT64886.1| (retinoid X receptor, partial [Gryllus firmus])

HSP 1 Score: 410.994 bits (1055), Expect = 3.533e-139
Identity = 212/332 (63.86%), Postives = 243/332 (73.19%), Query Frame = 0

Query:   56 VHYPP---LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            + YPP   LSGSKH CSICGDRASGKHYGVYSCEGCKGFFKRTVRKEL YACRE K CIIDKRQRNRCQYCRY KCL  GM+REAVQEER R   KG EA   VES++    L  +M ++RI+ AE   E     + +  + +             NK+  L QLVEWAKHIPHFT L +ED++ L+RAGWNELLIA  + RSM  +DGI+ A    I R +AH AGVG IFDRVL ELV KM+EMKMDK ELGCLR++ILFNPD +GL+     +VE  REKVYA LEEY RT H +EP RFAKLLLRLPALRSIGLKC+EHLFF++LI D
Sbjct:   20 IQYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELSYACREEKNCIIDKRQRNRCQYCRYQKCLTMGMKREAVQEERQRT--KG-EAQNEVESTS---SLHADMPVERILEAEKRVEYKTENNMEFENTMNNICQAANICQATNKQ--LFQLVEWAKHIPHFTSLPLEDQVLLLRAGWNELLIAAFSHRSMEVKDGIVLATGLTIHRNSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRSVILFNPDVRGLKSQQ--EVEMLREKVYAALEEYTRTTHPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIGD 341

[Close]

BLAST of retinoid x receptor vs. nr
Match: gi|66864094|dbj|BAD99298.1| (ultraspiracle [Leptinotarsa decemlineata])

HSP 1 Score: 411.379 bits (1056), Expect = 5.120e-139
Identity = 218/406 (53.69%), Postives = 259/406 (63.79%), Query Frame = 0

Query:   27 PQSPLELKPDVSLL-------------------LNAHSPALPR--PTSPAVHYPPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKDDGPNGNGADVNDVAAQSLELFIKEILE 411
            PQSP+++KPD S L                   L + SP  P+  P SP     PLSGSKH CSICGD+ASGKHYGVYSCEGCKGFFKRTVRK+L YACRE K C+IDKRQRNRCQYCRY KCL  GM+REAVQEER R   + A   E   S+        EM+I+R++ AE          R E +D    +            K L QLVEWAK IPHFT L + D++ L+RAGWNELLIA  + RSM  ++GI+ A    I +  A   GVG+I+DRVL ELV KMKEM+MDK ELGCLRAIIL+NPD +GL+     +VE  REK+Y  LEEY RT H NEP RFAKLLLRLPALRSIGLKC+EHLFF++LI D                +++ FI E+LE
Sbjct:    6 PQSPMDIKPDASTLQFSPQGPNSPGSFSLGHANLLSPSPGGPKGVPNSPYPPNHPLSGSKHLCSICGDKASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKNCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRTKDRDASEVESTSSNP------NEMSIERLLEAE---------KRVECNDPPVALENAVTNICQATNKQLLQLVEWAKLIPHFTSLPVSDQVLLLRAGWNELLIASFSHRSMQTQEGIILATGLTINKSTAQAVGVGNIYDRVLSELVNKMKEMRMDKTELGCLRAIILYNPDVRGLQS--TQEVEILREKIYENLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIGD---------------VTIDTFITEMLE 379

The following BLAST results are available for this feature:

BLAST of retinoid x receptor vs. L. salmonis genes
BLAST of retinoid x receptor vs. SwissProt
BLAST of retinoid x receptor vs. nr

BLAST of retinoid x receptor vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 25


Match Name	E-value	Identity	Description
EMLSAG00000001919	3.890e-163	56.76	supercontig:LSalAtl2s:LSalAtl2s132:616435:622808:1...	[more]
EMLSAG00000009969	1.565e-67	35.11	supercontig:LSalAtl2s:LSalAtl2s651:302705:304416:-...	[more]
EMLSAG00000007361	6.764e-67	35.00	supercontig:LSalAtl2s:LSalAtl2s418:374353:376789:1...	[more]
EMLSAG00000009941	3.567e-61	34.38	supercontig:LSalAtl2s:LSalAtl2s649:484085:485655:-...	[more]
EMLSAG00000009940	1.699e-58	34.13	supercontig:LSalAtl2s:LSalAtl2s649:353131:422335:-...	[more]
EMLSAG00000004451	5.408e-44	27.20	supercontig:LSalAtl2s:LSalAtl2s231:945915:949068:1...	[more]
EMLSAG00000013004	7.874e-38	29.55	supercontig:LSalAtl2s:LSalAtl2s98:942409:953748:1 ...	[more]
EMLSAG00000005090	2.381e-35	28.47	supercontig:LSalAtl2s:LSalAtl2s269:306853:308464:-...	[more]
EMLSAG00000008071	6.768e-33	32.89	supercontig:LSalAtl2s:LSalAtl2s47:304551:317770:1 ...	[more]
EMLSAG00000008902	3.535e-29	55.95	supercontig:LSalAtl2s:LSalAtl2s554:572309:581835:1...	[more]

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BLAST of retinoid x receptor vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|1350911\|sp\|P28702.2\|RXRB_HUMAN	9.214e-124	59.20	RecName: Full=Retinoic acid receptor RXR-beta; Alt...	[more]
gi\|1710720\|sp\|P49743.1\|RXRB_RAT	6.201e-123	59.82	RecName: Full=Retinoic acid receptor RXR-beta; Alt...	[more]
gi\|1350912\|sp\|P28704.2\|RXRB_MOUSE	9.350e-122	59.82	RecName: Full=Retinoic acid receptor RXR-beta; Alt...	[more]
gi\|52783418\|sp\|Q90417.1\|RXRBB_DANRE	2.562e-121	49.38	RecName: Full=Retinoic acid receptor RXR-beta-B; A...	[more]
gi\|18202151\|sp\|O76202.1\|USP_CHOFU	1.690e-111	48.09	RecName: Full=Protein ultraspiracle homolog; AltNa...	[more]

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BLAST of retinoid x receptor vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|657600368\|gb\|AID52845.1\|	0.000e+0	79.36	ultraspiracle [Tigriopus japonicus]	[more]
gi\|662179194\|gb\|AIE45497.1\|	3.806e-160	56.98	retinoid X receptor [Lepeophtheirus salmonis]	[more]
gi\|1110961970\|gb\|APG80612.1\|	1.569e-145	54.57	ultraspiracle [Paracyclopina nana]	[more]
gi\|105872963\|gb\|ABF74729.1\|	5.164e-143	57.00	retinoid X receptor-like protein [Daphnia magna] >...	[more]
gi\|314955486\|gb\|ADT64884.1\|	2.905e-142	58.84	retinoid X receptor [Gryllus firmus]	[more]
gi\|314955556\|gb\|ADT64885.1\|	3.001e-142	57.07	retinoid X receptor [Gryllus firmus]	[more]
gi\|302202572\|gb\|ADL09403.1\|	1.381e-141	58.58	retinoid X receptor [Gryllus firmus]	[more]
gi\|227150229\|gb\|ACP19739.1\|	1.681e-140	57.47	putative retinoid X receptor [Calanus finmarchicus...	[more]
gi\|314955738\|gb\|ADT64886.1\|	3.533e-139	63.86	retinoid X receptor, partial [Gryllus firmus]	[more]
gi\|66864094\|dbj\|BAD99298.1\|	5.120e-139	53.69	ultraspiracle [Leptinotarsa decemlineata]	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold192_size271026	supercontig	scaffold192_size271026:116203..123255 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	-

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
maker-scaffold192_size271026-snap-gene-1.22-mRNA-1	maker-scaffold192_size271026-snap-gene-1.22-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold192_size271026:116203..123255-

gene from alignment at scaffold192_size271026:116203..123255-

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>maker-scaffold192_size271026-snap-gene-1.22 ID=maker-scaffold192_size271026-snap-gene-1.22|Name=retinoid x receptor|organism=Tigriopus kingsejongensis|type=gene|length=7053bp|location=Sequence derived from alignment at scaffold192_size271026:116203..123255- (Tigriopus kingsejongensis)
GCCCGGGCCAGCCTGTGGCCTCCAGCGCCATCGATGGAGTCATCCCGATT
TGGCTCTTTATCCGACGCCCGATTTGGCCAAACTGTCGAGCTCAGTCCGA
GATCCTCACCCATTGCCTACACACATCGCCTGTGGGTTGTGAGCCTAGAC
ACTAGGTTGTGAGTGCGCCCGTGAATTGGTAGTGCCCGTGTCCGGCTGGC
TGGCCCGCACCTCCCAGCTCCCCTCCGCCCGTGCGAGTCCCGGGTCATGA
GCCTGGCGTCTTGAGTCGCGCCCCATGGCCATGGATCCCGCCCACAGCCT
CATGGAGGGCGGTGTCCCGCCCACCCCGCCCCTGGCTGGCCTAGCCCACC
CGCCTCAGTCGCCGCTCGAGCTCAAGCCCGACGTGTCCCTGCTGCTCAAC
GCCCATTCACCCGCACTCCCGCGCCCCACCTCGCCCGCAGTCCACTATCC
GCCGCTGAGCGGGTCCAAGCACTTCTGCAGCATCTGCGGCGACCGCGCCT
CCGGCAAGCACTACGGCGTGTACTCGTGCGAGGGCTGCAAGGGCTTCTTC
AAGCGCACCGTCCGCAAAGAGCTGGTCTACGCCTGCCGCGAGAACAAGGC
TTGCATCATCGACAAGCGCCAGCGCAACCGCTGCCAGTATTGCCGCTACA
TGAAGTGCCTGGCCACGGGCATGCGGCGCGAGGCCGTGCAGGAGGAGCGC
AATCGCGGCGGGCACAAGGGGGCCGAGGCGGCTGAGCCGGTCGAGAGCTC
GACGGGGGCCGGTGGGCTGGGGGGCGAGATGGCTATCGACCGCATCGTGG
CCGCCGAGCACATCTCGGAGCAGGGCGGCGCCTTCAGCCGGCAGGAGAGC
GACGATCTCCAGGCTCACATGCCCGGTGGCTTCGACGGGGACCAGCCCAA
CAAGCGCAAGATGCTCCAGCAACTGGTCGAGTGGGCCAAGCACATTCCCC
ACTTCACCGACCTCAAGATCGAAGATCGGGTAAGGCTCCTACCATGGTCT
CGGAGACCCTTTTTGGATAGGGTAGGGGCTGGCGGTCGTGAGCCGAAGGG
GTTTCGGAGGCTAGCGCTGCGGCTAGGGTCACTCGAGCGTAATTGACTTC
GATGAGCGCTGAGGCTAGCTTAATTCGAGCGTAGTTGACCTAGATTGGCG
CTGCGGCTAGCTCAATTCGAGCGTAGTTGACCTAGATTGGCGCTGCGGCT
AGCTTAATTCGAGCGTAATTGACTTCGATGAGCGCTGCGGCTAGCTCAAT
TCGAGCGTAATTGACTTCGATGAGCGCTGCGGCTAGCTCAATTCGAGCGT
AGTTGACTTCGATGAGCGCTGCGGCTAGCTCAATTTGAGGGTAGTTGACC
TAGATTGGCGCTGCGGCTAGCTCAATTCGAGCGTAGTTGACCTAGATTGG
CGCTGCGGCTAGCTCAATTCGAGCGTAGTTGACTTCGATGAGCGCTGCGG
CTAGCTCAATTCGAGCGTAGTTGACCTAGATTGGCGCTGCGGCTAGCTTA
ATTCGAGCGTAATTGACTTCGATGAGCGCTGCGGCTAGCTCAATTCGAGC
GTAGTTGACCTAGATTGGCGCTGCGGCTAGCTCAATTCGAGCGTAGTTGA
CCTAGATTGGCGCTGCGGCTAGCTCAATTCGAGCGTAATTGACTTCGATG
AGCGCTGCGGCTAGCTCAATTCGAGCGTAGTTGACCTAGATTGGCGCTGC
GGCTAGCTCAATTCGAGCGTAGTTGACCTAGATTGGCGCTGCGGCTAGCT
TAATTCGAGCGTAGTTGACCTAGATTGGCGCTGCGGCTAGCTTAAATTGA
CATACTGTTAGGGTTTGGTTACGTCGGGTCAGGTTAGGTCAGGTTGGATG
TTAGAACTGTTTGGGCGCAGGACCGCCAGCCCCTACCTTTACCCCAATTT
TCCGTGGGCCACGGACTTGCCCGGCCCCATGGGCGTTGGACTGGCGCATA
GGGTCACATTGGCCCCCGTCAGCCTGGGCCCACGGTATTGAGACGTCCCA
AGCTGGAATTGAGATAGATGCGGGGGTCTGGTGGCTGGAAATAACCCGCT
CGCCAAGGATGAAAATGATTTTCCGGATGTCAGTTCATCCATAATCAGTC
TGTTTCGAGCCATTCGGCTACTGCTTAACCCACCTCCAGGTCTTCGCTGG
CGTAAATTATGAGAGTCAGCTGTTAGCCAACACATAAATGTGTTTCAGAA
AAACATCGGATACAGTTAGGCTGTACTACACTTACGTGCCACCTCTCGTC
TACTGAGACACACGACCACACCAACCCCTTGAGATCTTGACCATGGCGTG
GCATTACAGCCCAAGGTCCATTCGAAAATCCTAAGGTGCTTCAGCCTAGA
GCAGCGACCTGGGTCGTCACCAATGAAAAAGAGATTTTTTTCACTCGTCA
TGACCACATCTGTTGGTCAAAGCCTCCCAAGTTTCTCTGTACGAACTCGT
TGAGCATGAGCAACACCTAGCTCATCCAGACTTGGGCTCCTGAAGTGTGG
GGCTGCCCATGATGAGGGCAGACTTACGTCTGCATCCTCCCACCTCGATC
CAGTTACATTGTTTAGCCCTTTTGGGTTTCCACTCGGGTTAAGTGGCCAT
GAGGTGAGAAAGTGTTGGCTCGGATCTTTGGCATCGCTGCTTTCATGACG
TGCGCGAGCCTCTGAGGAATTTGGGAAACCCACGAAACGGTGACGTCATT
CCTGGGATGAAAGTAGTCATTGGATCTCCTGGTATACTCTTCCGACTAAT
TGAACCTTCGGCACTAGAGGCTATAATGTGTCTCCCTTTCCAGATTAAGC
TGATTCGGGCTGGCTGGAACGAACTCTTGATCGCTGGCTGTGCCTTCAGG
TCCATGAATCAAGAAGATGGCATCCTCTGGGCGGACTCTCAGTTCATCAA
GCGCGAAAACGCCCATCTGGCCGGAGTTGGCGACATCTTTGACCGAGTTC
TCGTCGAGTTGGTGGGCAAGATGAAAGAAATGAAGATGGTATGGCCCTTT
TGACTTGACTACAACCTTAAAAACCTTATGTGGTATGACTCCTTTCAAGC
CGGCTTTTGTTTTTTTTGTCGAAATCAATACCAACGAGATCGATCTGAGA
CTGAATCCGATACGGAGCATTCAGTCCGAAAAAAGCGGTTTGGCTCAATT
CGAATGGCATTAATCAAGACGGCCTTCGCCCTGTCAATCATTTGCAAATA
TCGAGAGAAGTGTCAGCGGGAACCACATGCTACACCCGACCAGGATACTG
GGCCCAATTACTAAATGCAGGTGGAAATAACTCGGAAAGTATTCCGCCAA
ATGAACGCCCTCCCAGGTTGAAACAAATGGCGGCCTAACTAAAAGCGACG
ACTAGAAAGGCAAGACATCATTGGCATGGTCATTCAAAACGAGGCGTATT
TGTTGCCAATACTTGAAACAGCTATCGATCTTTGGAACTTCCGGGTTTGC
AAACTAGATTTATACTATATACTGTTGTTTAGCGAGGTTTGAGAGACGGC
CAGTGTCCCAAGGTATGGATTTCCGCACACCAGGATGACTAACTGACTTC
GAGGTTGCGTGTTTGGAGGGTCAAGTTGGACCTCCAAATCACAAATAAAT
CCCAGATAAAGCGAGAGACGGGTCTAGTTTATTTGGTTGGTTAAGTACGG
ATGACAACAGAACCCCGTTCTCCGCCTTACCCCACCAACCTCGCCAGGGT
CAATATCCTGTCCACTAAACCGGATCTGGAAAGGACGAGCAGCGGGAAAT
ACAAATCCCCGGTCGCCACACGTGAATGTCACTCCATTGGTAAGCTCCCA
AACCAAAGAGACTTTGTAGCCTATTTAGTTGCCAGAGGAGTAGCATGGCA
AGTATGTGTCTACTTCGAGTAAGTACGCGTACCAGTCTCGTTGGTTTGGG
CGTTGACTAGTGAAGGGACACAAAATCAGTGATTCATCCTGGTGTCGTGA
AATCCATGCCCAAGGTCGCAAATTGATATTTTAGCCTATCACTTTTCCTA
TGGTATTCTACAATGTCTTTTAGGACGGTCGAATTGCCAGAGGTGTGGGC
TCTTTTGTAATAAATCTGACCTGGAGAAAGTCGAACTTTGGAGGAAAGTA
AATTCATAAATAGTATTCACATGATGAGGCAAGCAGCGTAGCTTAATGGT
AGAGTGGCACAATCGGTCATCTATCATTGCGTTATCCGAGGGTCGTTCGT
TCGATCCCCGGGCTGGCCAAGCTCCGGCATCTAGTGGTGTTCACTCACAG
CTATTGTTGGCTTCCCTGGTGGGATTAAAGTGGGCGGACCTGTGGTCATT
CCTCGAGGGTAAGATAATAATTCATGATAAATTTGACCGCCAGGCTGACT
ATGTCTCCTCGGAGATTTCCCTAGCTGGGCAGAAATGCCCATTAGTATTC
ACATAGTACAAAACAGCCTGCATATTGCATTGCTACCAAACTTTAGAGAA
TGCAATGATCGACAATGTTCCCTACGTATATCGTAGATCTACTTGTGAAT
TTGTAATTCAACATTTTGCCTTGTTGGGATCCTACAATTTCATTCATCTG
TGTAAGAAATTCACTTTTTGCCTAGTGTCCACCTCGACTAGAAAGCCGCT
TGTCTCATTGCTTGTGGCTCTGTATACGTACACTGTACAAGTTCCATTAG
GTCCAGCAACGCTTACTGCATCTACGATGTTTGCAAAGATTCATATGTCA
AGGGAGTCGACATACATGGTAAAGTGACATACTGGAGCGACACTCTTGAA
CCTGGTTCTGGTTTTAGTCAAACAAGCCCGAGAGCATAACCTCTGGAATT
GATAGAATTGCCTACAAAACAGCCTGCATCTGGCAGTTTGCCATTCTACC
ATGTGTATATTTTGGTTCACATTTCATCCGGATTCCATGCTTCATAGTTG
CGAACAAATATTCTCATCATATGTAGATTTTCACAATACCAAAATGCTCG
AAGCCTGCGCTTGGTTTGGGGAAGGATGGTTTGATTGATCACATCAAGCA
TTAGTTGGATTCAAAAGGTTTTGCGCCAGTAATCTCCTCAGGAGCCAATC
AGCCCTAGCGGTATGGTAGCGTGGCTTTTTTTGTTTCTTTGTTTGGAACG
CCCCGGCCATTTCTGCCCAACTAAGGAAATCTCCGAGGAGACATAGTCAG
CCTGGTGGACAAATTTATCATGAATTATCACCTTACCCTCGAGGAATGAC
CACAGGTACGCCCACTTTAATCCCGACAGGGAAGCCAACAATAGCTGTGA
TTTAACACCACTACAGGATGTAGTTGCCGGAATTTGGCCAGCCCGGGGAT
CGAACGAACGACCCTCGGATAATGCAATGATAGATGACTGATTGACAATC
AGTCATGGAATGATCTGGGAGGTTGCCCTCTTTACTAAGTAATCGTTCCG
CTGATATCGAGTGAGCAGATTATTCCTCCCACGTCGACACTCTGTTCTTG
CTTGCGCTTCCATGATGAAGCATCTTGTTGCCCGTTGGCAGATACCTTTT
AAGTGATAAATACATCTGGAATAACCCAATCGAACACGACGGAATACACT
TATTCCAAATCTATCATCGAAGGTCGTGGGTTCGATCCACGTGCTGGCTG
AGTTTCAGCCGCGGGTGGTGATAAATCGAAGCTTTTAAAGGACTTAAGTG
GGCGAATTGAATTAGTGAAGGAGGCGTTTCTGTGGTCATGTCTGGAGGTT
AAGGTAATAATTCATGATCAATTTGTTTTGCAAGGCTGGGCTGCATTTCA
ACTATTATTAGCCAAAATGTGGAGAAAAAGCCGTGGGCCTTTCGGGATAA
CTCTCGCCCAAATTGTATTTGGATACGACCAATTAGAAAAGGCATTCTGA
GCAAAAACTGTTGGCCTTAATTGGTTCTCTGAGTGAAATTTGTAGGCATG
GAGCATAATTTATTCTGTGTCAAGGCAATCAAGATGAACTGACTTTTGCT
CAAAATTGTCCGACATTTCGTTAAAGGGATCAGTGTCATAGTGGATATGT
CATACAGTTGTAGATATGTCATAGTGGAAGGGATAGCGTCTCAGTGGACC
AGTTACAGGAATTAATCATTTTTCACAACCGACCAAATATTGCAATGCAT
CTGAGAATCAGTCACCAAATATCGTTGGGTCTAAATCTCGGAGGCGGATG
CTTCGGCCACCACCGAGTTCTTGGGTGCACCACTCCTCATTTGACCGACA
GTCCCTGAACCGAGCTTATTCTGAAGTTTCGTGTTTTCTTTCCAGGATAA
GGCCGAGTTGGGATGTCTGCGTGCAATCATTCTCTTTAATCCCGACGCCA
AGGGCTTGGAGCAGGATCCGGCTCTTCAAGTGGAGTCGTTCCGCGAGAAG
GTCTACGCCACTCTGGAAGAGTACTGCCGCACCAACCACGAGAACGAGCC
CAGTCGCTTCGCCAAGCTCCTGCTCCGATTGCCGGCCTTGCGGTCCATCG
GCTTGAAGTGTGTGGAGCACTTGTTCTTCTACAAGCTCATCAAGGACGAT
GGACCCAATGGCAACGGGGCGGACGTGAACGACGTGGCCGCTCAGAGTCT
GGAACTGTTCATCAAAGAGATCCTCGAGGAGTGAAGTCACAGTGAGCGCG
CAAGTGCCGAAACTTTCATCGCGCAACCTCGAAAGATAGCGAGCGCCTTC
CCGACTTGAGTGCGAGATCAAAGTGAGTGGTGAGAGGGGATGAGCCCAGA
CTCACTTGTGAGCGTGGCAAAGTGCATTTATGAAATGTAAGGGGGTTGTT
TTGTGATCTCTGCCGACTGTACAATACTGATTTACGACACAGTGAGTGGT
GTCCTTGGATGCTCTCACCATCATTACTTAACCACCTTGATTGGGTTGTA
GATGGATCACATTTGCGTGGGCGCTTGGAGTATATATTTTCAAAATGTAA
GCCAATATCAGAGTATATAATTGATGCGATGGAAGATTTATATCCCGTAG
TACCGTCCGAAGGTACCCCTCCGTCACTCTAATTGTTATAACAAATGAAT
ACATACACGCAAGAGATGGATTAATACATAAGATGTGTTTTAATTTATTT
TTT

Synonyms

The feature 'retinoid x receptor' has the following synonyms


Synonym
Tk07205

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