retinoid x receptor, maker-scaffold192_size271026-snap-gene-1.22 (gene) Tigriopus kingsejongensis

Overview


Name	retinoid x receptor
Unique Name	maker-scaffold192_size271026-snap-gene-1.22
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000012486 (supercontig:LSalAtl2s:LSalAtl2s91:348479:353390:-1 gene:EMLSAG00000012486 transcript:EMLSAT00000012486 description:"maker-LSalAtl2s91-snap-gene-4.8")

HSP 1 Score: 115.161 bits (287), Expect = 6.304e-28
Identity = 47/67 (70.15%), Postives = 53/67 (79.10%), Query Frame = 0

Query:   68 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMR 134
            C +CGDRASG+HYG  SCEGCKGFFKR++RK+L Y CR NK C + K  RNRCQYCR  KCLA GMR
Sbjct:  220 CVVCGDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMR 286

HSP 2 Score: 59.6918 bits (143), Expect = 8.692e-10
Identity = 53/179 (29.61%), Postives = 89/179 (49.72%), Query Frame = 0

Query:  212 KMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAG---CAFRSMNQEDGILWADSQF---IKRENAHLAGVGDIFDRV--LVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLI 382
            ++L   V W + IP F  L  E ++ L+R  W+++ + G   C+ +SMN +  +    S     + +E      V  +   +  + E V  M +M +   E   L+AI LF  D  G+      +++  R+K  + L+EYC    +++ +RF+ LLLRL  LRS+    +E LFF  LI
Sbjct:  485 RLLFLSVHWVRTIPCFGQLSYESQVGLVRNSWSDIFVLGMSQCS-KSMNLQSILTAIVSHLQTSVSQERLSATRVRQVTSTICKVQEYVRTMSKMCITDHEYAYLKAISLFGADQVGISSGK--KIDKLRQKTVSELKEYCTL--QDDENRFSNLLLRLSPLRSLQPDILEELFFAGLI 658

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BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000008543 (supercontig:LSalAtl2s:LSalAtl2s527:163002:172818:1 gene:EMLSAG00000008543 transcript:EMLSAT00000008543 description:"maker-LSalAtl2s527-augustus-gene-1.53")

HSP 1 Score: 111.694 bits (278), Expect = 8.640e-27
Identity = 47/80 (58.75%), Postives = 58/80 (72.50%), Query Frame = 0

Query:   67 FCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGG 146
             C IC DRA+G HYG+ +CEGCKGFFKRTV+ + +Y C  +  C I+K QRNRCQYCR+ KCL  GM   AV+E+R  GG
Sbjct:  282 VCMICEDRATGLHYGIITCEGCKGFFKRTVQNKRIYTCVADGECEINKAQRNRCQYCRFQKCLQKGMVLAAVREDRMPGG 361

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BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000000733 (supercontig:LSalAtl2s:LSalAtl2s1117:84476:96586:1 gene:EMLSAG00000000733 transcript:EMLSAT00000000733 description:"maker-LSalAtl2s1117-snap-gene-1.23")

HSP 1 Score: 100.523 bits (249), Expect = 3.817e-23
Identity = 39/70 (55.71%), Postives = 50/70 (71.43%), Query Frame = 0

Query:   68 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREA 137
            C +CGD++SG HYGV +CEGCKGFF+R+    + Y C   K CI+D+  RNRCQ+CR  KCLA GM R+ 
Sbjct:   47 CKVCGDKSSGVHYGVITCEGCKGFFRRSQSSVVNYQCPRQKNCIVDRVNRNRCQFCRLQKCLALGMSRDG 116

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BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000007741 (supercontig:LSalAtl2s:LSalAtl2s450:172104:174744:-1 gene:EMLSAG00000007741 transcript:EMLSAT00000007741 description:"maker-LSalAtl2s450-snap-gene-2.9")

HSP 1 Score: 100.523 bits (249), Expect = 4.566e-23
Identity = 40/79 (50.63%), Postives = 54/79 (68.35%), Query Frame = 0

Query:   68 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKA----CIIDKRQRNRCQYCRYMKCLATGMRREAVQEER 142
            C +CGDR+SGKHYG+YSC+GC GFFKR++ ++ +Y C+        C IDK  RN+C+ CR  KC    M ++AVQ ER
Sbjct:  108 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRQRIYTCKAQGEFKGRCPIDKTHRNQCRACRLKKCFDCSMNKDAVQHER 186

HSP 2 Score: 86.6557 bits (213), Expect = 1.368e-18
Identity = 55/208 (26.44%), Postives = 96/208 (46.15%), Query Frame = 0

Query:  188 SRQESDDLQAHMPGGFDGDQP----NKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVL-------VELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            S  + D+   H P  F    P       ++L   V W K +  F  L  +D++ L++  W +L +   +      +  I W  S  +   +A L    D+ D V+        E++ + +++  D  E G L+AI+LF P+  GL  +    VE  +++    L +Y R  +  +P+RF +LLL +P LR I    +E+ FF + + D
Sbjct:  412 SVSKEDEESEHPPSSFSPTWPMLQETTARLLFMAVRWVKCLAPFQTLSSKDQLLLLQESWKDLFLMHLS------QWAIPWDLSNLLLSRHASLVDRSDVEDHVVDMEIKTVQEIMCRFRQLSPDGTECGXLKAIVLFKPETAGL--NDFHPVEMLQDQAQCILGDYVRNRYSRQPTRFGRLLLAIPLLRMIRANTIENFFFRETVGD 611

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BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000007894 (supercontig:LSalAtl2s:LSalAtl2s466:351370:353021:1 gene:EMLSAG00000007894 transcript:EMLSAT00000007894 description:"maker-LSalAtl2s466-augustus-gene-2.7")

HSP 1 Score: 98.5969 bits (244), Expect = 8.149e-23
Identity = 36/77 (46.75%), Postives = 56/77 (72.73%), Query Frame = 0

Query:   68 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENK--ACIIDKRQRNRCQYCRYMKCLATGMRREAVQEER 142
            C +C D +SGKHYG+++C+GC GFFKR++R+  +Y C+     +C++DK  RN+C+ CR  +C+  GM ++AVQ ER
Sbjct:   34 CKVCTDHSSGKHYGIFACDGCAGFFKRSIRRNRLYVCKAKSEGSCLVDKTHRNQCRACRLKRCVDVGMNKDAVQHER 110

HSP 2 Score: 82.8037 bits (203), Expect = 1.606e-17
Identity = 53/175 (30.29%), Postives = 90/175 (51.43%), Query Frame = 0

Query:  212 KMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQ----VESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLI 382
            ++L   V WA+++P FT L   D++ L+   W EL +   A  ++  E          +  ++  ++ + ++  +   E + K + M++D  E  CLRAIILF      LE++  L+    + S +++   TL +Y    +  +P RF KLLL LP+LRS+    +E LFF K I
Sbjct:  250 RLLFMNVRWAQNVPAFTSLPYRDQLLLLEESWRELFLLSSAQFNLPVE---------LVASQDKSISVLSEL--KNFQEAIAKFQSMQVDTTEFACLRAIILFK---TVLEEEKELRDTSSITSLQDQAQLTLSKYISXAYPGQPMRFGKLLLLLPSLRSVSGNVIEELFFKKTI 410

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BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000003771 (supercontig:LSalAtl2s:LSalAtl2s2039:3647:12796:1 gene:EMLSAG00000003771 transcript:EMLSAT00000003771 description:"maker-LSalAtl2s2039-snap-gene-0.4")

HSP 1 Score: 84.3445 bits (207), Expect = 8.151e-18
Identity = 79/326 (24.23%), Postives = 138/326 (42.33%), Query Frame = 0

Query:   89 KGFFKRTVRKELVY-ACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEER--NRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKM---LQQLVEWAKHIP-------HFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQED------GILWADSQFIKRENAHLAGVGD---IFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKDDGPNGNGA 392
            +GFF+R++++++ Y  C +N+ C I +  RNRCQYCR  KC+A+GM R+AV+  R   R   K   A +     T    +  EM+ D  +  E +               +AH    +D     K KM   L +  E   ++P         T   I     +       L    C +  +   +       ++  +   I++E  +    G+   + D V  EL  ++ +  +  AE+G   ++++  PD  GL ++P L V+  + K+   L       H + P  F++LL  +  LR++     E   F K  K D  +  G+
Sbjct:   17 QGFFRRSIQQKIQYRPCTKNQQCNIQRINRNRCQYCRLKKCIASGMSRDAVRFGRVPKREKAKIFSAMQSSRMKTQEANVLSEMSDDXKIIEEIV---------------RAH----YDNXDYTKNKMEPFLAKAKENPVYVPCTGMVSQGMTKGGIFKNNNIFHRHLPSLYNVSCVYLKVQTNNFFSPLQSLVCLNGDIIRKETINQLAAGNAKFLMDSVF-ELAQRLNQFNLSDAEIGIFCSVVIITPDRPGL-RNPEL-VQKIQNKLKNILNNILIPQHSDSPGIFSELLSMVHDLRTLNTLHTEK--FLKQCKIDRSDMGGS 318

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BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000011488 (supercontig:LSalAtl2s:LSalAtl2s794:281844:292908:-1 gene:EMLSAG00000011488 transcript:EMLSAT00000011488 description:"maker-LSalAtl2s794-snap-gene-2.22")

HSP 1 Score: 81.6481 bits (200), Expect = 2.716e-17
Identity = 56/181 (30.94%), Postives = 89/181 (49.17%), Query Frame = 0

Query:  212 KMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRS--MNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYC--RTNHENEPS------RFAKLLLRLPALRSIGLKCVEHLFFYKLI 382
            K+L  +V WAK +P F +  + D+  L+R  W+ L I G A  +  +N+E  +L  + +     N           + + ++V K+++  +D  E   L+A+ILF+P+   L +    QVE  +++    LEEYC    N  N+P       RF KLLL    +  I  K VE LFF K +
Sbjct:  165 KLLFTVVHWAKSVPSFVEFSVNDQNVLLREAWSRLFILGTAQWAILINEEKLMLNCEEKSKDHTNLLFHHA-----KKMTKIVQKIRDQNLDYNEYTILKALILFSPEGNNLIESH--QVEKLQDQTLIMLEEYCSHNDNRVNKPKYTFNLRRFGKLLLAFSNIFQITSKDVESLFFQKTL 338

HSP 2 Score: 56.225 bits (134), Expect = 6.043e-9
Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 0

Query:   99 ELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEER 142
            +L Y C+ N  C ID  +RN+CQ CR+ KCL   M++EAVQ+ER
Sbjct:    1 KLDYVCKGNGNCTIDVARRNQCQSCRFKKCLMVKMKKEAVQQER 44

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BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000012651 (supercontig:LSalAtl2s:LSalAtl2s959:3535:5114:-1 gene:EMLSAG00000012651 transcript:EMLSAT00000012651 description:"maker-LSalAtl2s959-snap-gene-0.24")

HSP 1 Score: 78.9518 bits (193), Expect = 3.130e-16
Identity = 34/97 (35.05%), Postives = 52/97 (53.61%), Query Frame = 0

Query:   68 CSICGDRASGK-HYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAG 163
            C++CGD+A    HYG  +C  C+ FF+R+V K   Y C  ++AC+I    R  CQ+CRY KCL +GM+   V  E  +      +     +++ G  
Sbjct:   91 CNVCGDKAPDHIHYGGIACFSCRAFFRRSVPKHTTYFCSTDQACMITITTRKNCQFCRYKKCLESGMKPSWVLSEEEKSSRNLIKYVRKNKTTCGKN 187

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BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000005619 (supercontig:LSalAtl2s:LSalAtl2s301:354064:356113:1 gene:EMLSAG00000005619 transcript:EMLSAT00000005619 description:"maker-LSalAtl2s301-augustus-gene-3.7")

HSP 1 Score: 78.9518 bits (193), Expect = 3.668e-16
Identity = 30/85 (35.29%), Postives = 47/85 (55.29%), Query Frame = 0

Query:   65 KHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKE-LVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHK 148
               C +C + A+G H+G ++CEGCK FF RT   + ++  C+ N  C++DK+ R  C+ CR  KC+  GM +   +  R     K
Sbjct:   54 NQLCRVCEEPAAGFHFGAFTCEGCKSFFGRTCNNQSVIQECKNNYRCVVDKKNRTACKACRLRKCIMVGMSKSGSRYGRRSNWFK 138

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BLAST of retinoid x receptor vs. L. salmonis genes
Match: EMLSAG00000005620 (supercontig:LSalAtl2s:LSalAtl2s301:514440:538934:1 gene:EMLSAG00000005620 transcript:EMLSAT00000005620 description:"maker-LSalAtl2s301-augustus-gene-5.4")

HSP 1 Score: 72.7886 bits (177), Expect = 3.589e-15
Identity = 31/71 (43.66%), Postives = 43/71 (60.56%), Query Frame = 0

Query:   66 HFCSICGDRASGKHYGVYSCEGCKGFFKRTVRK---ELVYACRENKACIIDKRQRNRCQYCRYMKCLATGM 133
              C +C + A+G H+G ++CEGCK FF RT  K     +  C+ N +C+IDK+ R  C+ CR  KCL  GM
Sbjct:   36 QICRVCDEPAAGYHFGAFTCEGCKSFFGRTCGKSNLNSISECKNNYSCVIDKKNRTSCKACRLRKCLRVGM 106

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BLAST of retinoid x receptor vs. SwissProt
Match: gi|81888393|sp|Q5BJR8.1|RXRG_RAT (RecName: Full=Retinoic acid receptor RXR-gamma; AltName: Full=Nuclear receptor subfamily 2 group B member 3; AltName: Full=Retinoid X receptor gamma)

HSP 1 Score: 399.438 bits (1025), Expect = 1.450e-135
Identity = 213/378 (56.35%), Postives = 263/378 (69.58%), Query Frame = 0

Query:   18 PPLAGLAHPPQSPLELKPDVSL-LLNAHSPA---LPRPTSPAV---HYP---PLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQES-DDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            PP   LA PP   L + P   L ++N+ S +    P P  P +   +YP   P S  KH C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RK+L+Y CR+NK C+IDKRQRNRCQYCRY KCL  GM+REAVQEER R   +    AE   +STG   +  E  ++  +A E  +E  G  S + S +D   ++    D       K L  LVEWAK IPHF+DL +ED++ L+RAGWNELLIA  + RS++ +DGIL A    + R +AH AGVG IFDRVL ELV KMK+M+MDK+ELGCLRAI+LFNPDAKGL  +P+ +VE+ REKVYATLE Y +  +  +P RFAKLLLRLPALRSIGLKC+EHLFF+KLI D
Sbjct:   79 PPSGALAAPPGINLVVPPSSQLNVVNSVSSSEDIKPLPGLPGIGNMNYPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAEC--ASTGHEDMPVERILEAELAVEPKTESYGDMSVESSTNDPVTNICHAAD-------KQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMRMDKSELGCLRAIVLFNPDAKGL-SNPS-EVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 445

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BLAST of retinoid x receptor vs. SwissProt
Match: gi|74902124|sp|Q5I7G2.1|RXR_LYMST (RecName: Full=Retinoic acid receptor RXR; AltName: Full=Retinoid X receptor; Short=LymRXR)

HSP 1 Score: 397.897 bits (1021), Expect = 1.935e-135
Identity = 216/387 (55.81%), Postives = 261/387 (67.44%), Query Frame = 0

Query:   25 HPPQSPLELKPDVSLLLNAHSPALPRPTSPAVHYPPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKDDGPNGNGADVNDVAAQSLELFIKEILE 411
            H P S +   P + L     SP  P P SP + +  L  +KH C+ICGDRASGKHYGVYSCEGCKGFFKRTVRK+L YACR++K C+IDKRQRNRCQYCRYMKCL+ GM+REAVQEER R   KG      VES++GA     +M +++I+ AE   +           D   ++    D       K L  LVEWAK IPHFT+L +ED++ L+RAGWNELLIAG + RS+  +DGIL A    + R +AH AGVG IFDRVL ELV KM+EMKMDK ELGCLRA++LFNPDAKGL      +VE  REKVYA+LEEY +T +  EP RFAKLLLRLPALRSIGLKC+EHLFF+KLI D               Q ++ F+ E+LE
Sbjct:   81 HSPTSSMGSPPMLCL-----SPTGPSP-SPGLPHSSLH-TKHICAICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRDDKNCMIDKRQRNRCQYCRYMKCLSMGMKREAVQEERQRVKEKGDGE---VESTSGA---NNDMPVEQILEAELAVDPKIDTYIDAQKDPVTNICQAAD-------KQLFTLVEWAKRIPHFTELPLEDQVILLRAGWNELLIAGFSHRSIMAKDGILLATGLHVHRSSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAVVLFNPDAKGLTA--VQEVEQLREKVYASLEEYTKTRYPEEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD---------------QPIDTFLMEMLE 430

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BLAST of retinoid x receptor vs. SwissProt
Match: gi|167016572|sp|Q0GFF6.2|RXRG_PIG (RecName: Full=Retinoic acid receptor RXR-gamma; AltName: Full=Nuclear receptor subfamily 2 group B member 3; AltName: Full=Retinoid X receptor gamma)

HSP 1 Score: 396.741 bits (1018), Expect = 1.587e-134
Identity = 210/379 (55.41%), Postives = 260/379 (68.60%), Query Frame = 0

Query:   13 GVPPTPPLAGLAHPPQSPLELKPDVSLLLNAHSPALPRPTSPAV---HYP---PLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQES-DDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            G    PP   L  PP S L +   VS+  +      P P  P +   +YP   P S  KH C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RK+L+Y CR+NK C+IDKRQRNRCQYCRY KCL  GM+REAVQEER R   +    AE   +S+G   +  E  ++  +A E  +E  G  + + S +D   ++    D       K L  LVEWAK IPHF+DL +ED++ L+RAGWNELLIA  + RS++ +DGIL A    + R +AH AGVG IFDRVL ELV KMK+M+MDK+ELGCLRAI+LFNPDAKGL  +P+ +VE+ REKVYATLE Y +  +  +P RFAKLLLRLPALRSIGLKC+EHLFF+KLI D
Sbjct:   82 GTLAAPPGINLVAPPSSQLNVVNSVSISEDIK----PLPGLPGIGNMNYPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAEC--ASSGHEDMPVERILEAELAVEPKTESYGDMNMENSTNDPVTNICHAAD-------KQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGL-SNPS-EVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 445

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BLAST of retinoid x receptor vs. SwissProt
Match: gi|119367365|sp|Q0VC20.1|RXRG_BOVIN (RecName: Full=Retinoic acid receptor RXR-gamma; AltName: Full=Nuclear receptor subfamily 2 group B member 3; AltName: Full=Retinoid X receptor gamma)

HSP 1 Score: 396.356 bits (1017), Expect = 1.827e-134
Identity = 209/378 (55.29%), Postives = 256/378 (67.72%), Query Frame = 0

Query:   18 PPLAGLAHPPQSPLELKPDVSLLLNAHSPALPRPTSPAV---HYP---PLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISE-----QGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            PP   L  PP S L +   VS+  +      P P  P +   +YP   P S  KH C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RK+L+Y CR+NK C+IDKRQRNRCQYCRY KCL  GM+REAVQEER R   +    AE   S         +M ++RI+ AE   E      G   +   ++D   ++    D       K L  LVEWAK IPHF+DL +ED++ L+RAGWNELLIA  + RS++ +DGIL A    + R +AH AGVG IFDRVL ELV KMK+M+MDK+ELGCLRAI+LFNPDAKGL  +P+ +VE+ REKVYATLE Y +  +  +P RFAKLLLRLPALRSIGLKC+EHLFF+KLI D
Sbjct:   87 PPGINLVAPPSSQLNVVNSVSISEDIK----PLPGLPGIGNMNYPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECANSG------HEDMPVERILEAELAVEPKTESYGDMNTENSTNDPVTNICHAAD-------KQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGL-SNPS-EVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 445

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BLAST of retinoid x receptor vs. SwissProt
Match: gi|1350914|sp|P28705.2|RXRG_MOUSE (RecName: Full=Retinoic acid receptor RXR-gamma; AltName: Full=Nuclear receptor subfamily 2 group B member 3; AltName: Full=Retinoid X receptor gamma)

HSP 1 Score: 396.356 bits (1017), Expect = 2.347e-134
Identity = 212/382 (55.50%), Postives = 259/382 (67.80%), Query Frame = 0

Query:   18 PPLAGLAHPPQSPLELKPDVSL-LLNAHSPA---LPRPTSPAV---HYP---PLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISE-----QGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            PP   LA PP   L   P   L ++N+ S +    P P  P +   +YP   P S  KH C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RK+L+Y CR+NK C+IDKRQRNRCQYCRY KCL  GM+REAVQEER R   +    AE   SS        +M ++RI+ AE   E      G       ++D   ++    D       K L  LVEWAK IPHF+DL +ED++ L+RAGWNELLIA  + RS++ +DGIL A    + R +AH AGVG IFDRVL ELV KMK+M+MDK+ELGCLRAI+LFNPDAKGL  +P+ +VE+ REKVYATLE Y +  +  +P RFAKLLLRLPALRSIGLKC+EHLFF+KLI D
Sbjct:   79 PPSGALAAPPGINLVAPPSSQLNVVNSVSSSEDIKPLPGLPGIGNMNYPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASSS------HEDMPVERILEAELAVEPKTESYGDMNVENSTNDPVTNICHAAD-------KQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGL-SNPS-EVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 445

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BLAST of retinoid x receptor vs. SwissProt
Match: gi|75062013|sp|Q5REL6.1|RXRG_PONAB (RecName: Full=Retinoic acid receptor RXR-gamma; AltName: Full=Nuclear receptor subfamily 2 group B member 3; AltName: Full=Retinoid X receptor gamma)

HSP 1 Score: 395.201 bits (1014), Expect = 6.383e-134
Identity = 211/378 (55.82%), Postives = 262/378 (69.31%), Query Frame = 0

Query:   18 PPLAGLAHPPQSPLELKPDVSL-LLNAHSPA---LPRPTSPAV---HYP---PLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQES-DDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            PP   LA PP   L   P   L ++N+ S +    P P  P +   +YP   P S  KH C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RK+L+Y CR+NK C+IDKRQRNRCQYCRY KCL  GM+REAVQEER R   +    AE   +S+G   +  E  ++  +A E  +E  G  + + S +D   ++    D       K L  LVEWAK IPHF+DL +ED++ L+RAGWNELLIA  + RS++ +DGIL A    + R +AH AGVG IFDRVL ELV KMK+M+MDK+ELGCLRAI+LFNPDAKGL  +P+ +VE+ REKVYATLE Y +  +  +P RFAKLLLRLPALRSIGLKC+EHLFF+KLI D
Sbjct:   79 PPSGALAAPPGINLVAPPSSQLNVVNSVSSSEDIKPLPGLPGIGNMNYPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAEC--ASSGHEDMPVERILEAELAVEPKTESYGDMNMENSTNDPVTNICHAAD-------KQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGL-SNPS-EVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 445

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BLAST of retinoid x receptor vs. SwissProt
Match: gi|1350913|sp|P48443.1|RXRG_HUMAN (RecName: Full=Retinoic acid receptor RXR-gamma; AltName: Full=Nuclear receptor subfamily 2 group B member 3; AltName: Full=Retinoid X receptor gamma)

HSP 1 Score: 394.43 bits (1012), Expect = 1.186e-133
Identity = 210/378 (55.56%), Postives = 262/378 (69.31%), Query Frame = 0

Query:   18 PPLAGLAHPPQSPLELKPDVSL-LLNAHSPA---LPRPTSPAV---HYP---PLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQES-DDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            PP   LA PP   L   P   L ++N+ S +    P P  P +   +YP   P S  KH C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RK+L+Y CR+NK C+IDKRQRNRCQYCRY KCL  GM+REAVQEER R   +    AE   +++G   +  E  ++  +A E  +E  G  + + S +D   ++    D       K L  LVEWAK IPHF+DL +ED++ L+RAGWNELLIA  + RS++ +DGIL A    + R +AH AGVG IFDRVL ELV KMK+M+MDK+ELGCLRAI+LFNPDAKGL  +P+ +VE+ REKVYATLE Y +  +  +P RFAKLLLRLPALRSIGLKC+EHLFF+KLI D
Sbjct:   79 PPSGALAAPPGINLVAPPSSQLNVVNSVSSSEDIKPLPGLPGIGNMNYPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAEC--ATSGHEDMPVERILEAELAVEPKTESYGDMNMENSTNDPVTNICHAAD-------KQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGL-SNPS-EVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 445

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BLAST of retinoid x receptor vs. SwissProt
Match: gi|75017953|sp|Q8T5C6.1|RXR_BIOGL (RecName: Full=Retinoic acid receptor RXR; AltName: Full=RXR-like protein; AltName: Full=Retinoid X receptor; Short=BgRXR)

HSP 1 Score: 392.119 bits (1006), Expect = 4.049e-133
Identity = 214/412 (51.94%), Postives = 264/412 (64.08%), Query Frame = 0

Query:   18 PPLAGLAHPPQSPLELKPDVSLLLNAHSPALPRPTSPAVHYPPLS------------------GSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKDDGPNGNGADVNDVAAQSLELFIKEILE 411
            P +A    P   P ++          HSP +  PTS ++  PP+                    +KH C+ICGDRASGKHYGVYSCEGCKGFFKRTVRK+L YACR++K C+IDKRQRNRCQYCRYMKCL+ GM+REAVQEER R   KG      VES++GA     +M +++I+ AE   +           D   ++    D       K L  LVEWAK IPHFT+L +ED++ L+RAGWNELLIAG + RS+  +DGIL A    + R +AH AGVG IFDRVL ELV KM++MKMDK ELGCLRA++LFNPDAKGL      +VE  REKVYA+LEEY ++ +  EP RFAKLLLRLPALRSIGLKC+EHLFF+KLI D               Q ++ F+ E+LE
Sbjct:   60 PSMASSTQPSPGPQQM----------HSPGMHSPTS-SMGSPPMLCLSPSGPSPSPGLPHSSLHTKHICAICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRDDKNCMIDKRQRNRCQYCRYMKCLSMGMKREAVQEERQRVKEKGDGE---VESTSGA---NNDMPVEQILEAELAVDPKIDTYIDAQKDPVTNICQAAD-------KQLFTLVEWAKRIPHFTELPLEDQVILLRAGWNELLIAGFSHRSIMAKDGILLATGLHVHRSSAHQAGVGTIFDRVLTELVAKMRDMKMDKTELGCLRAVVLFNPDAKGLTA--VQEVEQLREKVYASLEEYTKSRYPEEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD---------------QPIDTFLMEMLE 430

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BLAST of retinoid x receptor vs. SwissProt
Match: gi|133700|sp|P28701.1|RXRG_CHICK (RecName: Full=Retinoic acid receptor RXR-gamma; AltName: Full=Nuclear receptor subfamily 2 group B member 3; AltName: Full=Retinoid X receptor gamma)

HSP 1 Score: 392.889 bits (1008), Expect = 5.373e-133
Identity = 208/378 (55.03%), Postives = 263/378 (69.58%), Query Frame = 0

Query:   18 PPLAGLAHPPQSPLELKPDVSLLLNAHSPALPRPTSPAV---HYP---PLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAE-HISEQGGAFS----RQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            P +  + H PQ      P+V   +++     P P  P +   +YP   P S +KH C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RK+L+Y CR+NK C+IDKRQRNRCQYCRY KCLA GM+REAVQEER     +G+      E+ + +GG   +M ++RI+ AE  +  +  A+S       ++D   ++    D       K L  LVEWAK IPHF+DL +ED++ L+RAGWNELLIA  + RS++ +DGIL A    + R +AH AGVG IFDRVL ELV KMK+M+MDK+ELGCLRAI+LFNPDAKGL   P+ +VES REKVYATLE Y +  +  +P RFAKLLLRLPALRSIGLKC+EHLFF+KLI D
Sbjct:   93 PGMNFVTHSPQ------PNVLNNVSSSEDIKPLPGLPGIGNMNYPSTSPGSLAKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER-----QGSRERSENEAESTSGG-SEDMPVERILEAELAVEPKTEAYSDVNTESSTNDPVTNICHAAD-------KQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGL-SSPS-EVESLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 449

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BLAST of retinoid x receptor vs. SwissProt
Match: gi|1710810|sp|P51129.1|RXRG_XENLA (RecName: Full=Retinoic acid receptor RXR-gamma; AltName: Full=Nuclear receptor subfamily 2 group B member 3; AltName: Full=Retinoid X receptor gamma)

HSP 1 Score: 392.119 bits (1006), Expect = 1.200e-132
Identity = 197/330 (59.70%), Postives = 239/330 (72.42%), Query Frame = 0

Query:   60 PLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAE-----HISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            P + +KH C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RK+LVY CR++K C+IDKRQRNRCQYCRY KCLA GM+REAVQEER R   K    AE   S++       EM ++RI+ AE      I   G A     ++D   ++    D       K L  LVEWAK IP+F+DL +ED++ L+RAGWNELLIA  + RS++ +DGIL A    + R +AH AGVG IFDRVL ELV KMK+M MDK+ELGCLRAI+LFNPDAKGL    A +VE+ REKVYATLE Y +  + ++P RFAKLLLRLPALRSIGLKC+EHLFF+KLI D
Sbjct:  138 PGALTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLVYTCRDSKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRSREKSDTEAESTSSTS------EEMPVERILEAELAVDPKIEAFGDAGLPNSTNDPVTNICHAAD-------KQLFTLVEWAKRIPYFSDLPLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHNAGVGSIFDRVLTELVSKMKDMDMDKSELGCLRAIVLFNPDAKGLSN--AAEVEALREKVYATLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 452

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BLAST of retinoid x receptor vs. nr
Match: gi|657600368|gb|AID52845.1| (ultraspiracle [Tigriopus japonicus])

HSP 1 Score: 686.026 bits (1769), Expect = 0.000e+0
Identity = 346/436 (79.36%), Postives = 366/436 (83.94%), Query Frame = 0

Query:    7 HSLMEGGVPPTPPLAGLAHP------PQSPLELKPDVSLLLNAHSPA------------LPRPTSPAVHYPPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAE-----------PVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKDDGPNGNG-ADVNDVAAQSLELFIKEILEE 412
            + LME    P     G   P      PQSPLELKPDVS+LLNA SPA             PRP SP+V+YPPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKEL YACRENK CIIDKRQRNRCQYCRYMKCLA GMRREAVQEERNR G   +  A             VESST  G    +M I+RI+ AE+ISE GGAFSR++S+DLQAHM GGF+GDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMN+E+GILWADSQFIKRENAHLAGVGDIFDRVLVELV KM+EMKMDKAELGCLRAIILFNPDAKGLEQ PAL+VE+FREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKDDGPN NG ADVNDVAAQSL++FIKEILEE
Sbjct:   14 NGLMESAGVPAAASVGANTPSNAFGNPQSPLELKPDVSMLLNAPSPASSVSGGGLANPQTPRPGSPSVNYPPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELTYACRENKDCIIDKRQRNRCQYCRYMKCLANGMRREAVQEERNRSGSSASGGANNGGGTGVGKEGEVESSTPGGQTSSDMPIERIIEAENISELGGAFSRKDSEDLQAHMTGGFEGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNEENGILWADSQFIKRENAHLAGVGDIFDRVLVELVQKMREMKMDKAELGCLRAIILFNPDAKGLEQGPALEVETFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKDDGPNSNGAADVNDVAAQSLDIFIKEILEE 449

[Close]

BLAST of retinoid x receptor vs. nr
Match: gi|662179194|gb|AIE45497.1| (retinoid X receptor [Lepeophtheirus salmonis])

HSP 1 Score: 467.233 bits (1201), Expect = 3.806e-160
Identity = 257/451 (56.98%), Postives = 301/451 (66.74%), Query Frame = 0

Query:   14 VPPTPP-LAGLAHPPQSPLELKPDVSLLLNAHSPALPRPTS----------------PAVH-------------YPP---LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRG------------GHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISE---QGGAFSRQESDDLQAHMPGGFDGDQPN----KRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKDDGPNGNGADVNDVAAQSLELFIKEILEE 412
             PPTP  L    + PQSP++LKPD SLLL   S     P S                P VH             YPP   LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKEL YACREN+ C+IDKRQRNRCQYCRYMKCL TGM+REAVQEER+RG             +  +  +E VESST  G  GG+M I+RI+ AE + E       F   +++   +      D +       K++++ QL+EWAK +PHF++LK+ED++ LIR GWNELL+AG AFRS+   DGIL  +   + RENAH AGVG IFDRVLVEL+ KMKEM+MDKAELGCLRAIILFNPDAKGL      +VE+ REKVYATLEEY R+ HENEPSRFAKLLLRLPALRSIGLKC+EHLFFYKL+ D   +GN           LE FI+ +LEE
Sbjct:    4 TPPTPNHLLNPGYMPQSPVDLKPDASLLLTTLSNPQSTPPSSAYPVGESMYGSQAPHPGVHGHARSTQSPPNNTYPPNHPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELTYACRENRDCVIDKRQRNRCQYCRYMKCLDTGMKREAVQEERHRGSNGPNHNNNNNNNNNNSRNSEEVESSTSGG--GGDMPIERIIEAEDVGEMKQDTSEFLLLDNNSSMSGGGSIGDMEIQRFGLAKKRIIHQLIEWAKLVPHFSELKVEDQVTLIRGGWNELLVAGLAFRSIKLNDGILLGNGTIVTRENAHEAGVGHIFDRVLVELIAKMKEMQMDKAELGCLRAIILFNPDAKGLSD--VTKVENLREKVYATLEEYTRSVHENEPSRFAKLLLRLPALRSIGLKCLEHLFFYKLVGDYLNDGN----------PLEKFIQSLLEE 440

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BLAST of retinoid x receptor vs. nr
Match: gi|1110961970|gb|APG80612.1| (ultraspiracle [Paracyclopina nana])

HSP 1 Score: 429.869 bits (1104), Expect = 1.569e-145
Identity = 233/427 (54.57%), Postives = 282/427 (66.04%), Query Frame = 0

Query:   21 AGLAHPPQSPLELKPDVSLLLNAHSPA--------------LPRPTSPAVHYPP---LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLG-----------------GEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMN-QEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKDDGPNGNGADVNDVAAQSLELFIKEILEE 412
             G    P SP E KPD   L+  +SP               L R +SP  +YPP   L+ SKH C+ICGD+ASGKHYGVYSCEGCKGFFKRTVRKEL YACREN+ CIIDKRQRNRCQYCRYMKCL TGM+REAVQEER+RG      A   V  STGA  LG                  +M +DRI+ ++  SE+ G    +      AH      G  PN   +  Q+VE+AK++P F DL ++ +I LI++GWNEL+I G A+RSM+  E+GIL    + I  E+AH AG+G+IFDRVL+ELVGKM+EMKM+K EL CLRAI+LFNPDA GL  D + QVE+ REKVYATLEE+CRT HE + SRFAKLLLRLPALRSIGLKC EH FF+KL+++D       D N     ++E FIK  LEE
Sbjct:   15 GGYDDQPNSPAEQKPDPMALMRGYSPGGSPGSTMTAGSPGGLVRSSSP--NYPPNHPLANSKHLCTICGDKASGKHYGVYSCEGCKGFFKRTVRKELSYACRENRNCIIDKRQRNRCQYCRYMKCLQTGMKREAVQEERSRGKESTGSAGGQV--STGAKELGQVANGIKEELPETTCTNSDMPLDRILESQVKSEKAG----ENPGAHPAHQAFNATGGDPNS-SIFAQIVEFAKNLPLFPDLSLDTQITLIKSGWNELMILGAAYRSMSLNEEGILMGQGKIITMEDAHRAGLGEIFDRVLIELVGKMEEMKMEKCELACLRAIVLFNPDAPGLTNDASNQVETLREKVYATLEEHCRTRHEKDTSRFAKLLLRLPALRSIGLKCAEHHFFFKLVREDRTMFEMDDGN----SAMETFIKNFLEE 428

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BLAST of retinoid x receptor vs. nr
Match: gi|105872963|gb|ABF74729.1| (retinoid X receptor-like protein [Daphnia magna] >gi|131665089|dbj|BAF49028.1| ultraspiracle [Daphnia magna] >gi|321453064|gb|EFX64341.1| hypothetical protein DAPPUDRAFT_219609 [Daphnia pulex] >gi|1022761776|gb|KZS07689.1| Retinoic acid receptor RXR-alpha-A [Daphnia magna])

HSP 1 Score: 422.165 bits (1084), Expect = 5.164e-143
Identity = 224/393 (57.00%), Postives = 266/393 (67.68%), Query Frame = 0

Query:   27 PQSPLELKPDVSLLLNAHSP------------------ALPRPT--------------SPAVHYPP---LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            PQSP+++KPD + L+   SP                  +LP+P+              S + HYPP   LS SKH CSICGDRASGKHYGVYSCEGCKGFFKRTVRK+L YACRE++ C+IDKRQRNRCQYCRY KCL  GM+REAVQEER R   KG      ++    +GG  G+M IDR++ AE   E         +     ++    D       K L QLVEWAKHIPHFT+L ++D++ L+RAGWNELLIA  + RS+  +DGI+ A    I R +AH AGVG IFDRVL ELV KM+EMK+D AELGCLRAIILFNPD KGL+     QVE+ REKVYATLEEY RTN+ +EP RFAKLLLRLPALRSIGLKC+EHLFF+KLI D
Sbjct:    6 PQSPIDMKPDTATLMAGFSPGSVGGGNSPTSPRSGLGFSLPQPSFTIGHSGYLNNSNGSKSGHYPPNHPLSNSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDRQCLIDKRQRNRCQYCRYQKCLQMGMKREAVQEERQRNKEKGE-----MDMDATSGG-QGDMPIDRVLEAEKRVECKDEPQVNSATAALGNICAATD-------KQLFQLVEWAKHIPHFTELPLDDQVVLLRAGWNELLIAAFSHRSVGVKDGIVLATGLVIHRNSAHQAGVGSIFDRVLTELVSKMREMKLDLAELGCLRAIILFNPDPKGLKS--VSQVEALREKVYATLEEYTRTNYADEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 383

[Close]

BLAST of retinoid x receptor vs. nr
Match: gi|314955486|gb|ADT64884.1| (retinoid X receptor [Gryllus firmus])

HSP 1 Score: 420.624 bits (1080), Expect = 2.905e-142
Identity = 223/379 (58.84%), Postives = 263/379 (69.39%), Query Frame = 0

Query:   27 PQSPLELKPDVSLLLNAHSPALPR------------------PTSPAVHYPP---LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            PQSPL++KPD + L+++ S +                      +S ++ YPP   LSGSKH CSICGDRASGKHYGVYSCEGCKGFFKRTVRKEL YACRE K CIIDKRQRNRCQYCRY KCL  GM+REAVQEER R   KG EA   VES++    L  +M ++RI+ AE   E     + +  + +             NK+  L QLVEWAKHIPHFT L +ED++ L+RAGWNELLIA  + RSM  +DGI+ A    I R +AH AGVG IFDRVL ELV KM+EMKMDK ELGCLR++ILFNPD +GL+     +VE  REKVYA LEEY RT H +EP RFAKLLLRLPALRSIGLKC+EHLFF++LI D
Sbjct:   18 PQSPLDMKPDTASLISSGSFSPTGGGGGGGGGGPNSPTGGQGKSSSSIQYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELSYACREEKNCIIDKRQRNRCQYCRYQKCLTMGMKREAVQEERQRT--KG-EAQNEVESTS---SLHADMPVERILEAEKRVEYKTENNMEFENTMNNICQAANICQATNKQ--LFQLVEWAKHIPHFTSLPLEDQVLLLRAGWNELLIAAFSHRSMEVKDGIVLATGLTIHRNSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRSVILFNPDVRGLKSQQ--EVEMLREKVYAALEEYTRTTHPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIGD 386

[Close]

BLAST of retinoid x receptor vs. nr
Match: gi|314955556|gb|ADT64885.1| (retinoid X receptor [Gryllus firmus])

HSP 1 Score: 420.624 bits (1080), Expect = 3.001e-142
Identity = 226/396 (57.07%), Postives = 267/396 (67.42%), Query Frame = 0

Query:   10 MEGGVPPTPPLAGLAHPPQSPLELKPDVSLLLNAHSPALPR------------------PTSPAVHYPP---LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            MEG          +   PQSPL++KPD + L+++ S +                      +S ++ YPP   LSGSKH CSICGDRASGKHYGVYSCEGCKGFFKRTVRKEL YACRE K CIIDKRQRNRCQYCRY KCL  GM+REAVQEER R   KG EA   VES++    L  +M ++RI+ AE   E     + +  + +             NK+  L QLVEWAKHIPHFT L +ED++ L+RAGWNELLIA  + RSM  +DGI+ A    I R +AH AGVG IFDRVL ELV KM+EMKMDK ELGCLR++ILFNPD +GL+     +VE  REKVYA LEEY RT H +EP RFAKLLLRLPALRSIGLKC+EHLFF++LI D
Sbjct:    1 MEGSAGGITLDGSIMGGPQSPLDMKPDTASLISSGSFSPTGGGGGGGGGGPNSPTGGQGKSSSSIQYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELSYACREEKNCIIDKRQRNRCQYCRYQKCLTMGMKREAVQEERQRT--KG-EAQNEVESTS---SLHADMPVERILEAEKRVEYKTENNMEFENTMNNICQAANICQATNKQ--LFQLVEWAKHIPHFTSLPLEDQVLLLRAGWNELLIAAFSHRSMEVKDGIVLATGLTIHRNSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRSVILFNPDVRGLKSQQ--EVEMLREKVYAALEEYTRTTHPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIGD 386

[Close]

BLAST of retinoid x receptor vs. nr
Match: gi|302202572|gb|ADL09403.1| (retinoid X receptor [Gryllus firmus])

HSP 1 Score: 418.698 bits (1075), Expect = 1.381e-141
Identity = 222/379 (58.58%), Postives = 263/379 (69.39%), Query Frame = 0

Query:   27 PQSPLELKPDVSLLLNAHSPALPR------------------PTSPAVHYPP---LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            PQSPL++KPD + L+++ S +                      +S ++ YPP   LSGSKH CSICGDRASGKHYGVYSCEGCKGFFKRTVRK+L YACRE K CIIDKRQRNRCQYCRY KCL  GM+REAVQEER R   KG EA   VES++    L  +M ++RI+ AE   E     + +  + +             NK+  L QLVEWAKHIPHFT L +ED++ L+RAGWNELLIA  + RSM  +DGI+ A    I R +AH AGVG IFDRVL ELV KM+EMKMDK ELGCLR++ILFNPD +GL+     +VE  REKVYA LEEY RT H +EP RFAKLLLRLPALRSIGLKC+EHLFF++LI D
Sbjct:   18 PQSPLDMKPDTASLISSGSFSPTGGGGGGGGGGPNSPTGGQGKSSSSIQYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKNCIIDKRQRNRCQYCRYQKCLTMGMKREAVQEERQRT--KG-EAQNEVESTS---SLHADMPVERILEAEKRVEYKTENNMEFENTMNNICQAANICQATNKQ--LFQLVEWAKHIPHFTSLPLEDQVLLLRAGWNELLIAAFSHRSMEVKDGIVLATGLTIHRNSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRSVILFNPDVRGLKSQQ--EVEMLREKVYAALEEYTRTTHPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIGD 386

[Close]

BLAST of retinoid x receptor vs. nr
Match: gi|227150229|gb|ACP19739.1| (putative retinoid X receptor [Calanus finmarchicus])

HSP 1 Score: 416.001 bits (1068), Expect = 1.681e-140
Identity = 227/395 (57.47%), Postives = 270/395 (68.35%), Query Frame = 0

Query:   27 PQSPLELKPDVSLLLNAH-SPALPR-PTSPAVH------------------YPP---LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAA-EPVESSTGAGGLG-GEMAIDRIVAAEHISEQGGAFS-RQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKDDGPNGNGADVN 395
            PQSP+E+KPD SLL   + SP + + PTS +                    YPP   LSG+KH CSICGDRASGKHYGVYSCEGCKGFFKRTVRKEL YACRE+K C+IDKRQRNRCQ+CRY KC+A GM+REAVQEER RG         + VE S     LG G+M  DRI+ AE I ++        E DD+QA      +       K L  LVEWAK IPHFT L ++D++ L+R GWNEL+IAG + RS+  ++GI  A    + RENAH +GVG IFDRVLVELV KM EM MDK ELG LRAI+L+NPD KGL +D A +VE  RE+VYA+LEEY R+ HENE  RFAKLLLRLPALRSIGLKC+EHLFF+K+I   G +G G D +
Sbjct:   17 PQSPMEMKPDTSLLTTVNNSPMMSQSPTSASTSFMGFGSPGGGQKSPLPGTYPPSHPLSGAKHMCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELSYACREDKQCLIDKRQRNRCQFCRYNKCMAMGMKREAVQEERQRGSRGDKNGGDDEVEGSV----LGPGDMPTDRILEAERICDKHEREQLTNEGDDIQAKFKFAAE-------KQLTSLVEWAKQIPHFTSLCLDDQVALLRGGWNELMIAGFSHRSIGIQNGIQLASGVVVTRENAHTSGVGAIFDRVLVELVSKMTEMCMDKTELGSLRAIVLYNPDVKGL-KDIA-RVEQLRERVYASLEEYTRSTHENETGRFAKLLLRLPALRSIGLKCMEHLFFFKII---GESGAGLDAH 395

[Close]

BLAST of retinoid x receptor vs. nr
Match: gi|314955738|gb|ADT64886.1| (retinoid X receptor, partial [Gryllus firmus])

HSP 1 Score: 410.994 bits (1055), Expect = 3.533e-139
Identity = 212/332 (63.86%), Postives = 243/332 (73.19%), Query Frame = 0

Query:   56 VHYPP---LSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKD 384
            + YPP   LSGSKH CSICGDRASGKHYGVYSCEGCKGFFKRTVRKEL YACRE K CIIDKRQRNRCQYCRY KCL  GM+REAVQEER R   KG EA   VES++    L  +M ++RI+ AE   E     + +  + +             NK+  L QLVEWAKHIPHFT L +ED++ L+RAGWNELLIA  + RSM  +DGI+ A    I R +AH AGVG IFDRVL ELV KM+EMKMDK ELGCLR++ILFNPD +GL+     +VE  REKVYA LEEY RT H +EP RFAKLLLRLPALRSIGLKC+EHLFF++LI D
Sbjct:   20 IQYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELSYACREEKNCIIDKRQRNRCQYCRYQKCLTMGMKREAVQEERQRT--KG-EAQNEVESTS---SLHADMPVERILEAEKRVEYKTENNMEFENTMNNICQAANICQATNKQ--LFQLVEWAKHIPHFTSLPLEDQVLLLRAGWNELLIAAFSHRSMEVKDGIVLATGLTIHRNSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRSVILFNPDVRGLKSQQ--EVEMLREKVYAALEEYTRTTHPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIGD 341

[Close]

BLAST of retinoid x receptor vs. nr
Match: gi|66864094|dbj|BAD99298.1| (ultraspiracle [Leptinotarsa decemlineata])

HSP 1 Score: 411.379 bits (1056), Expect = 5.120e-139
Identity = 218/406 (53.69%), Postives = 259/406 (63.79%), Query Frame = 0

Query:   27 PQSPLELKPDVSLL-------------------LNAHSPALPR--PTSPAVHYPPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELVYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGAEAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMPGGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAGCAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKMDKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHENEPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKDDGPNGNGADVNDVAAQSLELFIKEILE 411
            PQSP+++KPD S L                   L + SP  P+  P SP     PLSGSKH CSICGD+ASGKHYGVYSCEGCKGFFKRTVRK+L YACRE K C+IDKRQRNRCQYCRY KCL  GM+REAVQEER R   + A   E   S+        EM+I+R++ AE          R E +D    +            K L QLVEWAK IPHFT L + D++ L+RAGWNELLIA  + RSM  ++GI+ A    I +  A   GVG+I+DRVL ELV KMKEM+MDK ELGCLRAIIL+NPD +GL+     +VE  REK+Y  LEEY RT H NEP RFAKLLLRLPALRSIGLKC+EHLFF++LI D                +++ FI E+LE
Sbjct:    6 PQSPMDIKPDASTLQFSPQGPNSPGSFSLGHANLLSPSPGGPKGVPNSPYPPNHPLSGSKHLCSICGDKASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKNCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRTKDRDASEVESTSSNP------NEMSIERLLEAE---------KRVECNDPPVALENAVTNICQATNKQLLQLVEWAKLIPHFTSLPVSDQVLLLRAGWNELLIASFSHRSMQTQEGIILATGLTINKSTAQAVGVGNIYDRVLSELVNKMKEMRMDKTELGCLRAIILYNPDVRGLQS--TQEVEILREKIYENLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIGD---------------VTIDTFITEMLE 379

The following BLAST results are available for this feature:

BLAST of retinoid x receptor vs. L. salmonis genes
BLAST of retinoid x receptor vs. SwissProt
BLAST of retinoid x receptor vs. nr

BLAST of retinoid x receptor vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 25


Match Name	E-value	Identity	Description
EMLSAG00000012486	6.304e-28	70.15	supercontig:LSalAtl2s:LSalAtl2s91:348479:353390:-1...	[more]
EMLSAG00000008543	8.640e-27	58.75	supercontig:LSalAtl2s:LSalAtl2s527:163002:172818:1...	[more]
EMLSAG00000000733	3.817e-23	55.71	supercontig:LSalAtl2s:LSalAtl2s1117:84476:96586:1 ...	[more]
EMLSAG00000007741	4.566e-23	50.63	supercontig:LSalAtl2s:LSalAtl2s450:172104:174744:-...	[more]
EMLSAG00000007894	8.149e-23	46.75	supercontig:LSalAtl2s:LSalAtl2s466:351370:353021:1...	[more]
EMLSAG00000003771	8.151e-18	24.23	supercontig:LSalAtl2s:LSalAtl2s2039:3647:12796:1 g...	[more]
EMLSAG00000011488	2.716e-17	30.94	supercontig:LSalAtl2s:LSalAtl2s794:281844:292908:-...	[more]
EMLSAG00000012651	3.130e-16	35.05	supercontig:LSalAtl2s:LSalAtl2s959:3535:5114:-1 ge...	[more]
EMLSAG00000005619	3.668e-16	35.29	supercontig:LSalAtl2s:LSalAtl2s301:354064:356113:1...	[more]
EMLSAG00000005620	3.589e-15	43.66	supercontig:LSalAtl2s:LSalAtl2s301:514440:538934:1...	[more]

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BLAST of retinoid x receptor vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|81888393\|sp\|Q5BJR8.1\|RXRG_RAT	1.450e-135	56.35	RecName: Full=Retinoic acid receptor RXR-gamma; Al...	[more]
gi\|74902124\|sp\|Q5I7G2.1\|RXR_LYMST	1.935e-135	55.81	RecName: Full=Retinoic acid receptor RXR; AltName:...	[more]
gi\|167016572\|sp\|Q0GFF6.2\|RXRG_PIG	1.587e-134	55.41	RecName: Full=Retinoic acid receptor RXR-gamma; Al...	[more]
gi\|119367365\|sp\|Q0VC20.1\|RXRG_BOVIN	1.827e-134	55.29	RecName: Full=Retinoic acid receptor RXR-gamma; Al...	[more]
gi\|1350914\|sp\|P28705.2\|RXRG_MOUSE	2.347e-134	55.50	RecName: Full=Retinoic acid receptor RXR-gamma; Al...	[more]
gi\|75062013\|sp\|Q5REL6.1\|RXRG_PONAB	6.383e-134	55.82	RecName: Full=Retinoic acid receptor RXR-gamma; Al...	[more]
gi\|1350913\|sp\|P48443.1\|RXRG_HUMAN	1.186e-133	55.56	RecName: Full=Retinoic acid receptor RXR-gamma; Al...	[more]
gi\|75017953\|sp\|Q8T5C6.1\|RXR_BIOGL	4.049e-133	51.94	RecName: Full=Retinoic acid receptor RXR; AltName:...	[more]
gi\|133700\|sp\|P28701.1\|RXRG_CHICK	5.373e-133	55.03	RecName: Full=Retinoic acid receptor RXR-gamma; Al...	[more]
gi\|1710810\|sp\|P51129.1\|RXRG_XENLA	1.200e-132	59.70	RecName: Full=Retinoic acid receptor RXR-gamma; Al...	[more]

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BLAST of retinoid x receptor vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|657600368\|gb\|AID52845.1\|	0.000e+0	79.36	ultraspiracle [Tigriopus japonicus]	[more]
gi\|662179194\|gb\|AIE45497.1\|	3.806e-160	56.98	retinoid X receptor [Lepeophtheirus salmonis]	[more]
gi\|1110961970\|gb\|APG80612.1\|	1.569e-145	54.57	ultraspiracle [Paracyclopina nana]	[more]
gi\|105872963\|gb\|ABF74729.1\|	5.164e-143	57.00	retinoid X receptor-like protein [Daphnia magna] >...	[more]
gi\|314955486\|gb\|ADT64884.1\|	2.905e-142	58.84	retinoid X receptor [Gryllus firmus]	[more]
gi\|314955556\|gb\|ADT64885.1\|	3.001e-142	57.07	retinoid X receptor [Gryllus firmus]	[more]
gi\|302202572\|gb\|ADL09403.1\|	1.381e-141	58.58	retinoid X receptor [Gryllus firmus]	[more]
gi\|227150229\|gb\|ACP19739.1\|	1.681e-140	57.47	putative retinoid X receptor [Calanus finmarchicus...	[more]
gi\|314955738\|gb\|ADT64886.1\|	3.533e-139	63.86	retinoid X receptor, partial [Gryllus firmus]	[more]
gi\|66864094\|dbj\|BAD99298.1\|	5.120e-139	53.69	ultraspiracle [Leptinotarsa decemlineata]	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold192_size271026	supercontig	scaffold192_size271026:116203..123255 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	-

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
maker-scaffold192_size271026-snap-gene-1.22-mRNA-1	maker-scaffold192_size271026-snap-gene-1.22-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold192_size271026:116203..123255-

gene from alignment at scaffold192_size271026:116203..123255-

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>maker-scaffold192_size271026-snap-gene-1.22 ID=maker-scaffold192_size271026-snap-gene-1.22|Name=retinoid x receptor|organism=Tigriopus kingsejongensis|type=gene|length=7053bp|location=Sequence derived from alignment at scaffold192_size271026:116203..123255- (Tigriopus kingsejongensis)
GCCCGGGCCAGCCTGTGGCCTCCAGCGCCATCGATGGAGTCATCCCGATT
TGGCTCTTTATCCGACGCCCGATTTGGCCAAACTGTCGAGCTCAGTCCGA
GATCCTCACCCATTGCCTACACACATCGCCTGTGGGTTGTGAGCCTAGAC
ACTAGGTTGTGAGTGCGCCCGTGAATTGGTAGTGCCCGTGTCCGGCTGGC
TGGCCCGCACCTCCCAGCTCCCCTCCGCCCGTGCGAGTCCCGGGTCATGA
GCCTGGCGTCTTGAGTCGCGCCCCATGGCCATGGATCCCGCCCACAGCCT
CATGGAGGGCGGTGTCCCGCCCACCCCGCCCCTGGCTGGCCTAGCCCACC
CGCCTCAGTCGCCGCTCGAGCTCAAGCCCGACGTGTCCCTGCTGCTCAAC
GCCCATTCACCCGCACTCCCGCGCCCCACCTCGCCCGCAGTCCACTATCC
GCCGCTGAGCGGGTCCAAGCACTTCTGCAGCATCTGCGGCGACCGCGCCT
CCGGCAAGCACTACGGCGTGTACTCGTGCGAGGGCTGCAAGGGCTTCTTC
AAGCGCACCGTCCGCAAAGAGCTGGTCTACGCCTGCCGCGAGAACAAGGC
TTGCATCATCGACAAGCGCCAGCGCAACCGCTGCCAGTATTGCCGCTACA
TGAAGTGCCTGGCCACGGGCATGCGGCGCGAGGCCGTGCAGGAGGAGCGC
AATCGCGGCGGGCACAAGGGGGCCGAGGCGGCTGAGCCGGTCGAGAGCTC
GACGGGGGCCGGTGGGCTGGGGGGCGAGATGGCTATCGACCGCATCGTGG
CCGCCGAGCACATCTCGGAGCAGGGCGGCGCCTTCAGCCGGCAGGAGAGC
GACGATCTCCAGGCTCACATGCCCGGTGGCTTCGACGGGGACCAGCCCAA
CAAGCGCAAGATGCTCCAGCAACTGGTCGAGTGGGCCAAGCACATTCCCC
ACTTCACCGACCTCAAGATCGAAGATCGGGTAAGGCTCCTACCATGGTCT
CGGAGACCCTTTTTGGATAGGGTAGGGGCTGGCGGTCGTGAGCCGAAGGG
GTTTCGGAGGCTAGCGCTGCGGCTAGGGTCACTCGAGCGTAATTGACTTC
GATGAGCGCTGAGGCTAGCTTAATTCGAGCGTAGTTGACCTAGATTGGCG
CTGCGGCTAGCTCAATTCGAGCGTAGTTGACCTAGATTGGCGCTGCGGCT
AGCTTAATTCGAGCGTAATTGACTTCGATGAGCGCTGCGGCTAGCTCAAT
TCGAGCGTAATTGACTTCGATGAGCGCTGCGGCTAGCTCAATTCGAGCGT
AGTTGACTTCGATGAGCGCTGCGGCTAGCTCAATTTGAGGGTAGTTGACC
TAGATTGGCGCTGCGGCTAGCTCAATTCGAGCGTAGTTGACCTAGATTGG
CGCTGCGGCTAGCTCAATTCGAGCGTAGTTGACTTCGATGAGCGCTGCGG
CTAGCTCAATTCGAGCGTAGTTGACCTAGATTGGCGCTGCGGCTAGCTTA
ATTCGAGCGTAATTGACTTCGATGAGCGCTGCGGCTAGCTCAATTCGAGC
GTAGTTGACCTAGATTGGCGCTGCGGCTAGCTCAATTCGAGCGTAGTTGA
CCTAGATTGGCGCTGCGGCTAGCTCAATTCGAGCGTAATTGACTTCGATG
AGCGCTGCGGCTAGCTCAATTCGAGCGTAGTTGACCTAGATTGGCGCTGC
GGCTAGCTCAATTCGAGCGTAGTTGACCTAGATTGGCGCTGCGGCTAGCT
TAATTCGAGCGTAGTTGACCTAGATTGGCGCTGCGGCTAGCTTAAATTGA
CATACTGTTAGGGTTTGGTTACGTCGGGTCAGGTTAGGTCAGGTTGGATG
TTAGAACTGTTTGGGCGCAGGACCGCCAGCCCCTACCTTTACCCCAATTT
TCCGTGGGCCACGGACTTGCCCGGCCCCATGGGCGTTGGACTGGCGCATA
GGGTCACATTGGCCCCCGTCAGCCTGGGCCCACGGTATTGAGACGTCCCA
AGCTGGAATTGAGATAGATGCGGGGGTCTGGTGGCTGGAAATAACCCGCT
CGCCAAGGATGAAAATGATTTTCCGGATGTCAGTTCATCCATAATCAGTC
TGTTTCGAGCCATTCGGCTACTGCTTAACCCACCTCCAGGTCTTCGCTGG
CGTAAATTATGAGAGTCAGCTGTTAGCCAACACATAAATGTGTTTCAGAA
AAACATCGGATACAGTTAGGCTGTACTACACTTACGTGCCACCTCTCGTC
TACTGAGACACACGACCACACCAACCCCTTGAGATCTTGACCATGGCGTG
GCATTACAGCCCAAGGTCCATTCGAAAATCCTAAGGTGCTTCAGCCTAGA
GCAGCGACCTGGGTCGTCACCAATGAAAAAGAGATTTTTTTCACTCGTCA
TGACCACATCTGTTGGTCAAAGCCTCCCAAGTTTCTCTGTACGAACTCGT
TGAGCATGAGCAACACCTAGCTCATCCAGACTTGGGCTCCTGAAGTGTGG
GGCTGCCCATGATGAGGGCAGACTTACGTCTGCATCCTCCCACCTCGATC
CAGTTACATTGTTTAGCCCTTTTGGGTTTCCACTCGGGTTAAGTGGCCAT
GAGGTGAGAAAGTGTTGGCTCGGATCTTTGGCATCGCTGCTTTCATGACG
TGCGCGAGCCTCTGAGGAATTTGGGAAACCCACGAAACGGTGACGTCATT
CCTGGGATGAAAGTAGTCATTGGATCTCCTGGTATACTCTTCCGACTAAT
TGAACCTTCGGCACTAGAGGCTATAATGTGTCTCCCTTTCCAGATTAAGC
TGATTCGGGCTGGCTGGAACGAACTCTTGATCGCTGGCTGTGCCTTCAGG
TCCATGAATCAAGAAGATGGCATCCTCTGGGCGGACTCTCAGTTCATCAA
GCGCGAAAACGCCCATCTGGCCGGAGTTGGCGACATCTTTGACCGAGTTC
TCGTCGAGTTGGTGGGCAAGATGAAAGAAATGAAGATGGTATGGCCCTTT
TGACTTGACTACAACCTTAAAAACCTTATGTGGTATGACTCCTTTCAAGC
CGGCTTTTGTTTTTTTTGTCGAAATCAATACCAACGAGATCGATCTGAGA
CTGAATCCGATACGGAGCATTCAGTCCGAAAAAAGCGGTTTGGCTCAATT
CGAATGGCATTAATCAAGACGGCCTTCGCCCTGTCAATCATTTGCAAATA
TCGAGAGAAGTGTCAGCGGGAACCACATGCTACACCCGACCAGGATACTG
GGCCCAATTACTAAATGCAGGTGGAAATAACTCGGAAAGTATTCCGCCAA
ATGAACGCCCTCCCAGGTTGAAACAAATGGCGGCCTAACTAAAAGCGACG
ACTAGAAAGGCAAGACATCATTGGCATGGTCATTCAAAACGAGGCGTATT
TGTTGCCAATACTTGAAACAGCTATCGATCTTTGGAACTTCCGGGTTTGC
AAACTAGATTTATACTATATACTGTTGTTTAGCGAGGTTTGAGAGACGGC
CAGTGTCCCAAGGTATGGATTTCCGCACACCAGGATGACTAACTGACTTC
GAGGTTGCGTGTTTGGAGGGTCAAGTTGGACCTCCAAATCACAAATAAAT
CCCAGATAAAGCGAGAGACGGGTCTAGTTTATTTGGTTGGTTAAGTACGG
ATGACAACAGAACCCCGTTCTCCGCCTTACCCCACCAACCTCGCCAGGGT
CAATATCCTGTCCACTAAACCGGATCTGGAAAGGACGAGCAGCGGGAAAT
ACAAATCCCCGGTCGCCACACGTGAATGTCACTCCATTGGTAAGCTCCCA
AACCAAAGAGACTTTGTAGCCTATTTAGTTGCCAGAGGAGTAGCATGGCA
AGTATGTGTCTACTTCGAGTAAGTACGCGTACCAGTCTCGTTGGTTTGGG
CGTTGACTAGTGAAGGGACACAAAATCAGTGATTCATCCTGGTGTCGTGA
AATCCATGCCCAAGGTCGCAAATTGATATTTTAGCCTATCACTTTTCCTA
TGGTATTCTACAATGTCTTTTAGGACGGTCGAATTGCCAGAGGTGTGGGC
TCTTTTGTAATAAATCTGACCTGGAGAAAGTCGAACTTTGGAGGAAAGTA
AATTCATAAATAGTATTCACATGATGAGGCAAGCAGCGTAGCTTAATGGT
AGAGTGGCACAATCGGTCATCTATCATTGCGTTATCCGAGGGTCGTTCGT
TCGATCCCCGGGCTGGCCAAGCTCCGGCATCTAGTGGTGTTCACTCACAG
CTATTGTTGGCTTCCCTGGTGGGATTAAAGTGGGCGGACCTGTGGTCATT
CCTCGAGGGTAAGATAATAATTCATGATAAATTTGACCGCCAGGCTGACT
ATGTCTCCTCGGAGATTTCCCTAGCTGGGCAGAAATGCCCATTAGTATTC
ACATAGTACAAAACAGCCTGCATATTGCATTGCTACCAAACTTTAGAGAA
TGCAATGATCGACAATGTTCCCTACGTATATCGTAGATCTACTTGTGAAT
TTGTAATTCAACATTTTGCCTTGTTGGGATCCTACAATTTCATTCATCTG
TGTAAGAAATTCACTTTTTGCCTAGTGTCCACCTCGACTAGAAAGCCGCT
TGTCTCATTGCTTGTGGCTCTGTATACGTACACTGTACAAGTTCCATTAG
GTCCAGCAACGCTTACTGCATCTACGATGTTTGCAAAGATTCATATGTCA
AGGGAGTCGACATACATGGTAAAGTGACATACTGGAGCGACACTCTTGAA
CCTGGTTCTGGTTTTAGTCAAACAAGCCCGAGAGCATAACCTCTGGAATT
GATAGAATTGCCTACAAAACAGCCTGCATCTGGCAGTTTGCCATTCTACC
ATGTGTATATTTTGGTTCACATTTCATCCGGATTCCATGCTTCATAGTTG
CGAACAAATATTCTCATCATATGTAGATTTTCACAATACCAAAATGCTCG
AAGCCTGCGCTTGGTTTGGGGAAGGATGGTTTGATTGATCACATCAAGCA
TTAGTTGGATTCAAAAGGTTTTGCGCCAGTAATCTCCTCAGGAGCCAATC
AGCCCTAGCGGTATGGTAGCGTGGCTTTTTTTGTTTCTTTGTTTGGAACG
CCCCGGCCATTTCTGCCCAACTAAGGAAATCTCCGAGGAGACATAGTCAG
CCTGGTGGACAAATTTATCATGAATTATCACCTTACCCTCGAGGAATGAC
CACAGGTACGCCCACTTTAATCCCGACAGGGAAGCCAACAATAGCTGTGA
TTTAACACCACTACAGGATGTAGTTGCCGGAATTTGGCCAGCCCGGGGAT
CGAACGAACGACCCTCGGATAATGCAATGATAGATGACTGATTGACAATC
AGTCATGGAATGATCTGGGAGGTTGCCCTCTTTACTAAGTAATCGTTCCG
CTGATATCGAGTGAGCAGATTATTCCTCCCACGTCGACACTCTGTTCTTG
CTTGCGCTTCCATGATGAAGCATCTTGTTGCCCGTTGGCAGATACCTTTT
AAGTGATAAATACATCTGGAATAACCCAATCGAACACGACGGAATACACT
TATTCCAAATCTATCATCGAAGGTCGTGGGTTCGATCCACGTGCTGGCTG
AGTTTCAGCCGCGGGTGGTGATAAATCGAAGCTTTTAAAGGACTTAAGTG
GGCGAATTGAATTAGTGAAGGAGGCGTTTCTGTGGTCATGTCTGGAGGTT
AAGGTAATAATTCATGATCAATTTGTTTTGCAAGGCTGGGCTGCATTTCA
ACTATTATTAGCCAAAATGTGGAGAAAAAGCCGTGGGCCTTTCGGGATAA
CTCTCGCCCAAATTGTATTTGGATACGACCAATTAGAAAAGGCATTCTGA
GCAAAAACTGTTGGCCTTAATTGGTTCTCTGAGTGAAATTTGTAGGCATG
GAGCATAATTTATTCTGTGTCAAGGCAATCAAGATGAACTGACTTTTGCT
CAAAATTGTCCGACATTTCGTTAAAGGGATCAGTGTCATAGTGGATATGT
CATACAGTTGTAGATATGTCATAGTGGAAGGGATAGCGTCTCAGTGGACC
AGTTACAGGAATTAATCATTTTTCACAACCGACCAAATATTGCAATGCAT
CTGAGAATCAGTCACCAAATATCGTTGGGTCTAAATCTCGGAGGCGGATG
CTTCGGCCACCACCGAGTTCTTGGGTGCACCACTCCTCATTTGACCGACA
GTCCCTGAACCGAGCTTATTCTGAAGTTTCGTGTTTTCTTTCCAGGATAA
GGCCGAGTTGGGATGTCTGCGTGCAATCATTCTCTTTAATCCCGACGCCA
AGGGCTTGGAGCAGGATCCGGCTCTTCAAGTGGAGTCGTTCCGCGAGAAG
GTCTACGCCACTCTGGAAGAGTACTGCCGCACCAACCACGAGAACGAGCC
CAGTCGCTTCGCCAAGCTCCTGCTCCGATTGCCGGCCTTGCGGTCCATCG
GCTTGAAGTGTGTGGAGCACTTGTTCTTCTACAAGCTCATCAAGGACGAT
GGACCCAATGGCAACGGGGCGGACGTGAACGACGTGGCCGCTCAGAGTCT
GGAACTGTTCATCAAAGAGATCCTCGAGGAGTGAAGTCACAGTGAGCGCG
CAAGTGCCGAAACTTTCATCGCGCAACCTCGAAAGATAGCGAGCGCCTTC
CCGACTTGAGTGCGAGATCAAAGTGAGTGGTGAGAGGGGATGAGCCCAGA
CTCACTTGTGAGCGTGGCAAAGTGCATTTATGAAATGTAAGGGGGTTGTT
TTGTGATCTCTGCCGACTGTACAATACTGATTTACGACACAGTGAGTGGT
GTCCTTGGATGCTCTCACCATCATTACTTAACCACCTTGATTGGGTTGTA
GATGGATCACATTTGCGTGGGCGCTTGGAGTATATATTTTCAAAATGTAA
GCCAATATCAGAGTATATAATTGATGCGATGGAAGATTTATATCCCGTAG
TACCGTCCGAAGGTACCCCTCCGTCACTCTAATTGTTATAACAAATGAAT
ACATACACGCAAGAGATGGATTAATACATAAGATGTGTTTTAATTTATTT
TTT

Synonyms

The feature 'retinoid x receptor' has the following synonyms


Synonym
Tk07205

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