50s ribosomal protein l1, maker-scaffold244_size240795-snap-gene-1.34 (gene) Tigriopus kingsejongensis

Overview
Name50s ribosomal protein l1
Unique Namemaker-scaffold244_size240795-snap-gene-1.34
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of 50s ribosomal protein l1 vs. nr
Match: gi|1325283678|ref|XP_023326541.1| (uncharacterized protein LOC111699970 [Eurytemora affinis])

HSP 1 Score: 98.2117 bits (243), Expect = 2.580e-21
Identity = 70/202 (34.65%), Postives = 106/202 (52.48%), Query Frame = 0 
Query:   48 CPLKNSNG-NCNADLN--EYKCGVFFTNLPAQQYPIRLLSNMPDVLRRPSVANSPEIKETFGEFKNIKPRSFRFPPKLREERCGQLKIYNARCSVIMDKVSKTPLDSCTKTILNDQGIDTIGNILCKHAFSF--AGILDPSYRIN---IGYYVSLCDQPWTPVQSDVTRDISKVHSEDLCCGFINGKPTFQRCDGTPTRSTC 241
            CP ++ +G  C A     ++KCG+F+ NL      I+ +  MPD +      +   I E F   K+ +  +   P  L +ER    +  N++C ++MD++ +  LDSC KTI N +G+DTIGN LC  A  F  A   D S  +    + +Y S C+  WTPV+S  +  ++   SE LCC   +GK  F+RCDG+  R  C
Sbjct:   23 CPRESRDGFECRASKEPAQFKCGIFYNNLLGDN-EIKWIGAMPDAIETVRRKDPNLINEVFP--KDEQGNAVSEPYFLYKERSCDQQDANSKCYLLMDQIKQNKLDSCQKTIGNLEGLDTIGNQLCDQALRFKKADGQDVSQGLENQILTFYYSYCNSTWTPVESTSSGILN--LSEPLCCS-ADGK--FRRCDGSDFRREC 216
The following BLAST results are available for this feature:
BLAST of 50s ribosomal protein l1 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of 50s ribosomal protein l1 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of 50s ribosomal protein l1 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 1
Match NameE-valueIdentityDescription
gi|1325283678|ref|XP_023326541.1|2.580e-2134.65uncharacterized protein LOC111699970 [Eurytemora a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold244_size240795supercontigscaffold244_size240795:220520..221864 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteF:structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold244_size240795-snap-gene-1.34-mRNA-1maker-scaffold244_size240795-snap-gene-1.34-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold244_size240795:220520..221864+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold244_size240795-snap-gene-1.34 ID=maker-scaffold244_size240795-snap-gene-1.34|Name=50s ribosomal protein l1|organism=Tigriopus kingsejongensis|type=gene|length=1345bp|location=Sequence derived from alignment at scaffold244_size240795:220520..221864+ (Tigriopus kingsejongensis)
CTCTCAATGATCAGTCGGCGATTGGAAGTGTTTGCATTCACATATCCAGA
ATTGCTTGAGGAATTAAACAGTCCAGGAGACATTAGCTCGTTCCAATACA
CACACCATGAATCAATTTCTCGTCCTCGTGGCCCTTATTCCTGCCTTCGT
GCTGGCTCAAGATGTCCAGCCCGCATCTCCCAACGAGTTTCCCGTGATTG
GAACCGTTCCAGGGAGCTTCCCCAACCCTGAGGTGGCTAGTGTCGAGTGT
CCATTGAAGAACTCGAATGGCAACTGCAACGCCGACCTGTAAGAATCCTT
TTGTAACGTTTAAAATTGGGCCAACCGTTCATATCATGAACTCCTTTCTT
TAGCAATGAGTACAAATGCGGGGTGTTCTTTACCAACTTGCCCGCTCAGC
AATACCCCATTCGCTTGTTGAGCAACATGCCCGATGTTCTCCGACGACCG
AGTGTGGCCAATTCTCCGGAAATCAAGGAGACCTTCGGAGAGTTCAAGAA
CATCAAGCCCAGGAGCTTCCGATTCCCCCCCAAGCTTAGGGAAGAGCGAT
GCGGCCAGCTCAAGATCTACAACGCCCGCTGCTCTGTGATCGTAAGTCCA
CGGGTCTCATGAATCCACTTGTTGGTCCATGGGCGTTTTTTCACCGGTAC
TTTCCTTCCCCCTTGCAGATGGACAAGGTGAGCAAGACCCCATTGGATAG
CTGTACCAAGACCATCTTGAACGATCAAGGCATCGACACCATCGGCAACA
TTCTGTGCAAGCACGCTTTCTCGTTTGCCGGAATTTTGGATCCCTCTTAC
CGAATCAACGTGAGTCCAATGACGGTTCGATTTCGTTAACTTTCAGCAAT
TGCTTGATGTGTGTCGCTTCTACTTAGATTGGCTACTATGTGTCTCTGTG
CGACCAACCCTGGACTCCGGTTCAATCAGATGTGACTCGTGATATCAGCA
AGGTTCACTCCGAGGATCTGTGCTGCGGTTTCATCAATGGGAAACCCACT
TTCCAGCGATGTGACGGAACTCCCACCCGATCTACTTGCGACCAGAAATA
AGACAGTTCTCCTTAATTGCCCCTCTTCCTTCGAGGTCACAATTTGTCCA
ACAATCATGAACGTATTATCACTCAGCTCTCAGAGCCGTCGGATCAACTA
GCATTAGTGTGAACTTCATACGTGATGGAATTGTAAAATTATATCTTATT
ATATCATTAAATTGCACTCCGATTCAAAAAGCCTGGCTCGTGTATTTCCT
GGTCCAACCAATATGCAGCTTCCTGGCGAGAAAGTACTTTGTCAATTTAA
AGTTTAGAGTGCCAAAGTTTCACGCCTTTCTTTCACTCGTCATCG
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Synonyms
The feature '50s ribosomal protein l1' has the following synonyms
Synonym
Tk02093
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