adenomatous polyposis coli, maker-scaffold338_size202645-snap-gene-1.14 (gene) Tigriopus kingsejongensis

Overview
Nameadenomatous polyposis coli
Unique Namemaker-scaffold338_size202645-snap-gene-1.14
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
BLAST of adenomatous polyposis coli vs. L. salmonis genes
Match: EMLSAG00000009061 (supercontig:LSalAtl2s:LSalAtl2s568:163360:180719:-1 gene:EMLSAG00000009061 transcript:EMLSAT00000009061 description:"maker-LSalAtl2s568-augustus-gene-1.59")

HSP 1 Score: 97.4413 bits (241), Expect = 2.860e-22
Identity = 103/279 (36.92%), Postives = 142/279 (50.90%), Query Frame = 0
Query:   95 SHLPRPQALGRSESSGSSTKSCRTDNASPEPDKLSKSGESDDDEELMACVINIGMPKSKSEPLDLKD--KVVKRE--KKASSKHNRRSTSKSPRNSKVIPGVRIAELKLKPRST--SQEKESLTLPLTKNEPPTEGDQAETPVSSARMSQIWSDESPNCAPPPTLEAMAETLLASAAQDLSNEDVLQMEAER-------VSQCVQEEASMISSVCSTLSAIQPPSLMLESLMSISGEKDRSEAQSIQKINSKSPVKKSSPTKLECRHTISAKKGFAVPE 360
            S LPRP+ LGRSESSGSS KS   +  + E    + S + + DE L+  +I  GMPKSKSEPL      K+ K E   K   K   R  SKSPR SK+IPGVRIAEL+L P+ +  S E +S ++   K+EP              R+  +   E P              + +   +DL  +D+ ++E          VS   ++  S+ SS+CS +S IQPPS+M + L+S+S                K+ V      K+ECRHT+SAKKG+ VPE
Sbjct: 1689 SLLPRPRVLGRSESSGSSQKS---NFPNRETSMSNDSLQDESDEALLEDIIKSGMPKSKSEPLGFNQGLKLAKTEFGVKKRDKKKGRDNSKSPRASKIIPGVRIAELRLLPKKSPISPEIKSTSIIEPKDEP--------------RVFDLQCGEKP-------------LIFSENKKDLEIQDI-EIEPSTKVDIKGAVSVLTEDCLSLESSLCSNISMIQPPSIM-DXLISMS--------------ERKTDVLLPHTAKMECRHTLSAKKGYTVPE 1921          
BLAST of adenomatous polyposis coli vs. nr
Match: gi|1325301328|ref|XP_023332205.1| (adenomatous polyposis coli protein-like [Eurytemora affinis])

HSP 1 Score: 151.369 bits (381), Expect = 1.623e-36
Identity = 141/387 (36.43%), Postives = 187/387 (48.32%), Query Frame = 0
Query:   30 GRETPVHFATEGTPHVFSRCDSLSSLSCTEEQDDKECGTEGESVEKADLTLSSKRSTPSSAGVFRSHLPRPQALGRSESSGSSTKSCRTDNASPEPDKLSK-----------------SGESDDDEELMACVINIGMPKSKSEPLDLKDKVV-----KREKKASS-KHNRRSTSKSPRNSKVIPGVRIAELKLKPRS------TSQEKESLTL--------------PLTKNEPPTEG---DQAETPVSSARMS---QIWSDESPNCAPPPTLEAMAETLLASAAQDLS--NEDVLQMEAERV------SQCVQEEASMISSVCSTLSAIQPPSLMLESLMSISGEKDRSEAQSIQKINSKSPVKKSSPTKLECRHTISAKKGFAVP 359
            G ETP+H+ATE TP VFSR DSLSSL   ++   K       S   +D T S   ++ +S   F+SHLPRP  +GRS SSGSST         P+  K SK                 +  +DD+E L+A  I+ GMPKSKSE  DL  K       +REK AS+ +  RR  SKSPR S++IPGV I ELKLKPR+       S E E+  L              P  + EP  +     + E+P+ +  M    ++      + +    +E M  TL  S   D+   N  ++  EA  V      S+      SM S    TLS +QPPSLMLESL S+S              N  +  +++S  KLECRHT+S K G +VP
Sbjct: 1267 GGETPLHYATEDTPAVFSRNDSLSSLEYEDQNLQKGPPPSQPSKGGSDGTSSWGVASSTS---FQSHLPRPLTVGRSASSGSST-------GVPDKPKDSKPNKSFNSSLSSLSIDSLNNTNDDEENLLADCISSGMPKSKSEHFDLSGKFRAKKSPRREKSASAEREKRRPASKSPRGSRLIPGVVIPELKLKPRTPPKSRPQSGEMENFNLKSRSASPNLESEIKPDQRTEPEKQKAKESKPESPIVNFNMEDEPEVLHHSPIHESASNQVEEMTLTLTQSRISDMEGFNSSLISREAGVVAASFDLSEYPSLTGSMYSEGGETLSMVQPPSLMLESLPSLS-----------MPFNPPTVTRRTSDVKLECRHTLSGKLGSSVP 1632          
The following BLAST results are available for this feature:
BLAST of adenomatous polyposis coli vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000090612.860e-2236.92supercontig:LSalAtl2s:LSalAtl2s568:163360:180719:-... [more]
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BLAST of adenomatous polyposis coli vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of adenomatous polyposis coli vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 1
Match NameE-valueIdentityDescription
gi|1325301328|ref|XP_023332205.1|1.623e-3636.43adenomatous polyposis coli protein-like [Eurytemor... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold338_size202645supercontigscaffold338_size202645:86389..87747 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold338_size202645-snap-gene-1.14-mRNA-1maker-scaffold338_size202645-snap-gene-1.14-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold338_size202645:86389..87747+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold338_size202645-snap-gene-1.14 ID=maker-scaffold338_size202645-snap-gene-1.14|Name=adenomatous polyposis coli|organism=Tigriopus kingsejongensis|type=gene|length=1359bp|location=Sequence derived from alignment at scaffold338_size202645:86389..87747+ (Tigriopus kingsejongensis)
ATCGAATCCCAACCCTTCAAGTGCGACAGTAGGAGTCCGAGGGGCCACGG CCAATGTCCCCGAGATTCCGAGGGGGCCTGATCCCCGATTTATGATCGAT ACGCCCATCTCTGAGCGAAGCAGACATCCCTCTGTCAGGTGAGTCCAGAG CCGATTGATGGCATACCTGGACATCCCTCCATATATTTGATTCATTGCAG AGGCCGAGGTGGGACGACTACTTCGAGCAACCTGACGTCGGGCCGAGAGA CCCCTGTCCACTTTGCCACCGAAGGAACTCCGCATGTCTTTTCTCGTTGC GATTCCCTGAGTTCGCTGAGTTGTACCGAGGAGCAGGATGATAAGGAATG TGGCACTGAAGGCGAATCCGTCGAGAAAGGTGAGGAGATTGTTCGTCATC TCGGTGGTGCTGTCACACTTGCTCCTGCTCGAGTTTAATGAGCATCTTTG AAGTGAGGAAACGACGATTGATGATCCCTAATGCTTGCCTTGCTCCTCTT TCCAGCTGATTTGACTCTGAGTAGTAAGAGATCCACCCCGTCCTCGGCTG GCGTGTTCAGGTCTCATCTCCCACGCCCCCAGGCATTGGGCAGGTCAGAG TCCTCAGGTTCCTCGACCAAGAGTTGTCGAACCGACAATGCTTCGCCCGA GCCCGATAAGTTGTCCAAGTCGGGTGAGTCTGACGACGACGAGGAGCTCA TGGCTTGCGTCATCAACATCGGCATGCCCAAGTCCAAGTCCGAGCCTTTG GACCTCAAGGACAAGGTGGTCAAAAGAGAGAAGAAGGCCAGCAGCAAACA CAATCGACGCTCCACCTCCAAGAGTCCACGAAACTCCAAGGTGATCCCGG GAGTGAGGATTGCGGAGTTGAAATTGAAGCCCCGAAGCACCAGTCAGGAG AAGGAGAGTCTGACTCTGCCCTTGACCAAGAATGAGCCTCCGACCGAGGG TGATCAGGCCGAAACGCCCGTGTCCTCTGCCAGGATGAGTCAGATCTGGA GCGACGAGAGTCCCAATTGCGCTCCTCCTCCGACCCTGGAGGCCATGGCG GAGACGCTCTTAGCCTCTGCGGCTCAGGATTTGAGCAATGAGGATGTCCT CCAAATGGAGGCCGAACGCGTGTCACAGTGCGTACAAGAGGAGGCCAGCA TGATCAGCTCCGTGTGCTCCACCTTGAGTGCGATTCAGCCTCCGTCCCTC ATGCTGGAGAGTCTCATGTCAATCAGCGGGGAGAAAGACAGATCGGAGGC GCAGTCAATCCAGAAGATCAACAGCAAAAGCCCAGTGAAGAAGTCATCGC CGACCAAGCTGGAATGCAGACACACGATTAGTGCTAAGAAGGGATTTGCC GTCCCAGAG
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Synonyms
The feature 'adenomatous polyposis coli' has the following synonyms
Synonym
Tk00723
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