cytochrome c oxidase, maker-scaffold3945_size7060-snap-gene-0.0 (gene) Tigriopus kingsejongensis

Overview


Name	cytochrome c oxidase
Unique Name	maker-scaffold3945_size7060-snap-gene-0.0
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of cytochrome c oxidase vs. SwissProt
Match: gi|1352177|sp|P98000.1|COXN_BRADU (RecName: Full=Alternative cytochrome c oxidase subunit 1; AltName: Full=Alternative cytochrome c oxidase polypeptide I; AltName: Full=Cytochrome BB3 subunit 1; AltName: Full=Oxidase BB(3) subunit 1)

HSP 1 Score: 58.9214 bits (141), Expect = 2.811e-9
Identity = 28/53 (52.83%), Postives = 38/53 (71.70%), Query Frame = 0

Query:   26 MDADVYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMIS 78
            +DA+ YL  +T+HG IMV ++LTA   G F N LIPL +GARDM   ++NM+S
Sbjct:   76 IDANQYLQFITMHGMIMVIYLLTALFLGGFGNYLIPLMVGARDMVFPYVNMLS 128

[Close]

BLAST of cytochrome c oxidase vs. nr
Match: gi|657642639|ref|WP_029447143.1| (cytochrome-c oxidase [Cellulophaga baltica] >gi|730598660|gb|AIZ41455.1| cytochrome C oxidase [Cellulophaga baltica 18])

HSP 1 Score: 157.918 bits (398), Expect = 9.070e-42
Identity = 74/78 (94.87%), Postives = 78/78 (100.00%), Query Frame = 0

Query:    1 MQLAWPGEAFPIFEAVLGKWAPGGVMDADVYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMIS 78
            MQLAWPGEAFP+FEA+LGKWAPGGVMDAD+YLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNM+S
Sbjct:   62 MQLAWPGEAFPVFEALLGKWAPGGVMDADIYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMVS 139

[Close]

BLAST of cytochrome c oxidase vs. nr
Match: gi|1188374011|ref|WP_085495279.1| (cytochrome c oxidase subunit I [Arenibacter troitsensis] >gi|1183562883|emb|SMG06780.1| cytochrome c oxidase subunit 1 [Arenibacter troitsensis])

HSP 1 Score: 157.532 bits (397), Expect = 1.101e-41
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = 0

Query:    1 MQLAWPGEAFPIFEAVLGKWAPGGVMDADVYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMIS 78
            MQLAWPGEAFPIFEA+LGKWAPGGVMDADVYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNM+S
Sbjct:   61 MQLAWPGEAFPIFEAILGKWAPGGVMDADVYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMVS 138

[Close]

BLAST of cytochrome c oxidase vs. nr
Match: gi|1119986703|ref|WP_072862834.1| (cytochrome c oxidase subunit I [Arenibacter palladensis] >gi|1110400413|emb|SHF53839.1| cytochrome c oxidase subunit 1 [Arenibacter palladensis])

HSP 1 Score: 157.532 bits (397), Expect = 1.101e-41
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = 0

Query:    1 MQLAWPGEAFPIFEAVLGKWAPGGVMDADVYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMIS 78
            MQLAWPGEAFPIFEA+LGKWAPGGVMDADVYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNM+S
Sbjct:   61 MQLAWPGEAFPIFEAILGKWAPGGVMDADVYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMVS 138

[Close]

BLAST of cytochrome c oxidase vs. nr
Match: gi|738195954|ref|WP_036151889.1| (cytochrome-c oxidase [Maribacter forsetii])

HSP 1 Score: 156.762 bits (395), Expect = 2.014e-41
Identity = 74/78 (94.87%), Postives = 78/78 (100.00%), Query Frame = 0

Query:    1 MQLAWPGEAFPIFEAVLGKWAPGGVMDADVYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMIS 78
            MQLAWPGE+FPIFEA+LGKWAPGGVMDADVYLALVT+HGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNM+S
Sbjct:   63 MQLAWPGESFPIFEALLGKWAPGGVMDADVYLALVTMHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMVS 140

[Close]

BLAST of cytochrome c oxidase vs. nr
Match: gi|1124236903|ref|WP_074537132.1| (cytochrome c oxidase subunit I [Cellulophaga baltica] >gi|1086762435|emb|SDE44364.1| cytochrome c oxidase subunit 1 [Cellulophaga baltica])

HSP 1 Score: 156.762 bits (395), Expect = 2.276e-41
Identity = 73/78 (93.59%), Postives = 78/78 (100.00%), Query Frame = 0

Query:    1 MQLAWPGEAFPIFEAVLGKWAPGGVMDADVYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMIS 78
            MQLAWPGE+FP+FEA+LGKWAPGGVMDAD+YLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNM+S
Sbjct:   62 MQLAWPGESFPVFEALLGKWAPGGVMDADIYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMVS 139

[Close]

BLAST of cytochrome c oxidase vs. nr
Match: gi|646944944|ref|WP_025615940.1| (MULTISPECIES: cytochrome-c oxidase [Cellulophaga] >gi|694994128|gb|KGK31909.1| cytochrome C oxidase [Cellulophaga sp. E6(2014)] >gi|723619715|gb|AIY13087.1| cytochrome C oxidase [Cellulophaga baltica NN016038])

HSP 1 Score: 156.762 bits (395), Expect = 2.300e-41
Identity = 73/78 (93.59%), Postives = 78/78 (100.00%), Query Frame = 0

Query:    1 MQLAWPGEAFPIFEAVLGKWAPGGVMDADVYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMIS 78
            MQLAWPGE+FP+FEA+LGKWAPGGVMDAD+YLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNM+S
Sbjct:   62 MQLAWPGESFPVFEALLGKWAPGGVMDADIYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMVS 139

[Close]

BLAST of cytochrome c oxidase vs. nr
Match: gi|1119875683|ref|WP_072764375.1| (cytochrome c oxidase subunit I [Arenibacter nanhaiticus] >gi|1110164717|emb|SHJ11218.1| cytochrome c oxidase subunit 1 [Arenibacter nanhaiticus])

HSP 1 Score: 156.377 bits (394), Expect = 2.420e-41
Identity = 75/78 (96.15%), Postives = 78/78 (100.00%), Query Frame = 0

Query:    1 MQLAWPGEAFPIFEAVLGKWAPGGVMDADVYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMIS 78
            MQLAWPGEAFP+FEAVLGKWAPGGVMDADVYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGF+NM+S
Sbjct:   61 MQLAWPGEAFPLFEAVLGKWAPGGVMDADVYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFMNMVS 138

[Close]

BLAST of cytochrome c oxidase vs. nr
Match: gi|670494433|ref|WP_031442394.1| (cytochrome-c oxidase [Arenibacter algicola] >gi|1220432899|gb|ASO05729.1| alternative cytochrome c oxidase subunit 1 [Arenibacter algicola] >gi|1331526414|dbj|GBF20847.1| alternative cytochrome c oxidase subunit 1 [Arenibacter sp. C-21])

HSP 1 Score: 156.377 bits (394), Expect = 2.521e-41
Identity = 75/78 (96.15%), Postives = 78/78 (100.00%), Query Frame = 0

Query:    1 MQLAWPGEAFPIFEAVLGKWAPGGVMDADVYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMIS 78
            MQLAWPGE+FPIFEA+LGKWAPGGVMDADVYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNM+S
Sbjct:   61 MQLAWPGESFPIFEAILGKWAPGGVMDADVYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMVS 138

[Close]

BLAST of cytochrome c oxidase vs. nr
Match: gi|1134307257|ref|WP_076547287.1| (cytochrome c oxidase subunit I [Maribacter ulvicola] >gi|1131912963|emb|SIQ23572.1| cytochrome c oxidase subunit 1 [Maribacter ulvicola])

HSP 1 Score: 156.377 bits (394), Expect = 2.600e-41
Identity = 75/78 (96.15%), Postives = 78/78 (100.00%), Query Frame = 0

Query:    1 MQLAWPGEAFPIFEAVLGKWAPGGVMDADVYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMIS 78
            MQLAWPGEAFPIFEA+LGKWAPGGVMDADVYLALVT+HGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNM+S
Sbjct:   63 MQLAWPGEAFPIFEALLGKWAPGGVMDADVYLALVTMHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMVS 140

[Close]

BLAST of cytochrome c oxidase vs. nr
Match: gi|639136383|ref|WP_024481863.1| (cytochrome-c oxidase [Cellulophaga baltica])

HSP 1 Score: 156.377 bits (394), Expect = 2.736e-41
Identity = 73/78 (93.59%), Postives = 78/78 (100.00%), Query Frame = 0

Query:    1 MQLAWPGEAFPIFEAVLGKWAPGGVMDADVYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMIS 78
            MQLAWPGE+FP+FEA+LGKWAPGGVMDAD+YLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNM+S
Sbjct:   62 MQLAWPGESFPVFEALLGKWAPGGVMDADIYLALVTIHGTIMVFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMVS 139

The following BLAST results are available for this feature:

BLAST of cytochrome c oxidase vs. L. salmonis genes
BLAST of cytochrome c oxidase vs. SwissProt
BLAST of cytochrome c oxidase vs. nr

BLAST of cytochrome c oxidase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of cytochrome c oxidase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|1352177\|sp\|P98000.1\|COXN_BRADU	2.811e-9	52.83	RecName: Full=Alternative cytochrome c oxidase sub...	[more]

BLAST of cytochrome c oxidase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|657642639\|ref\|WP_029447143.1\|	9.070e-42	94.87	cytochrome-c oxidase [Cellulophaga baltica] >gi\|73...	[more]
gi\|1188374011\|ref\|WP_085495279.1\|	1.101e-41	97.44	cytochrome c oxidase subunit I [Arenibacter troits...	[more]
gi\|1119986703\|ref\|WP_072862834.1\|	1.101e-41	97.44	cytochrome c oxidase subunit I [Arenibacter pallad...	[more]
gi\|738195954\|ref\|WP_036151889.1\|	2.014e-41	94.87	cytochrome-c oxidase [Maribacter forsetii]	[more]
gi\|1124236903\|ref\|WP_074537132.1\|	2.276e-41	93.59	cytochrome c oxidase subunit I [Cellulophaga balti...	[more]
gi\|646944944\|ref\|WP_025615940.1\|	2.300e-41	93.59	MULTISPECIES: cytochrome-c oxidase [Cellulophaga] ...	[more]
gi\|1119875683\|ref\|WP_072764375.1\|	2.420e-41	96.15	cytochrome c oxidase subunit I [Arenibacter nanhai...	[more]
gi\|670494433\|ref\|WP_031442394.1\|	2.521e-41	96.15	cytochrome-c oxidase [Arenibacter algicola] >gi\|12...	[more]
gi\|1134307257\|ref\|WP_076547287.1\|	2.600e-41	96.15	cytochrome c oxidase subunit I [Maribacter ulvicol...	[more]
gi\|639136383\|ref\|WP_024481863.1\|	2.736e-41	93.59	cytochrome-c oxidase [Cellulophaga baltica]	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold3945_size7060	supercontig	scaffold3945_size7060:214..1131 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	-

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
maker-scaffold3945_size7060-snap-gene-0.0-mRNA-1	maker-scaffold3945_size7060-snap-gene-0.0-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold3945_size7060:214..1131-

gene from alignment at scaffold3945_size7060:214..1131-

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>maker-scaffold3945_size7060-snap-gene-0.0 ID=maker-scaffold3945_size7060-snap-gene-0.0|Name=cytochrome c oxidase|organism=Tigriopus kingsejongensis|type=gene|length=918bp|location=Sequence derived from alignment at scaffold3945_size7060:214..1131- (Tigriopus kingsejongensis)
GATGCAGTTGGCTTGGCCAGGTGAAGCTTTTCCAATATTTGAGGCAGTAC
TCGGTAAATGGGCTCCGGGAGGGGTCATGGATGCAGATGTATATTTGGCT
TTGGTAACTATACACGGTACCATTATGGTATTCTTTGTATTAACAGCAGG
TTTAAGTGGCACCTTTAGTAACCTTCTAATTCCCTTGCAGATAGGAGCTC
GCGATATGGCATCCGGTTTTCTAAATATGATATCGTATTGGTTGTTTTTT
GTGTCTAGTGTTATAATGATTTGTTCCTTATTTGTTGAGGCAGGTCCTGC
GGCCGCGGGTTGGACAATTTATCCACCTTTAAGTGCATTGCCTATGGCAC
AGCCAGGATCAGGAATGGGAATGACGTTGTGGTTGGTTTCTATGGCAATT
TTTATTGCTTCTTCCCTAATAGGTTCACTAAATTACATTGTTACCGTAAT
CAATCTTAGAACAAAAGGGATGTCAATGACAAGGTTGCCATTAACTATTT
GGGCATTCTTTGTTACTGCAATTATTGGGGTGGTTTCATTTCCTGTATTA
CTTTCTGCAGCATTGATGTTAATAATGGATAGAAGTTTTGGAACATCTTT
TTTCTTGTCCGACATCTTTATACAAGGAGAGGTATTACATTACCAAGGTG
GTTCACCTGTTTTGTATGAGCACCTATTTTGGTTTTTAGGGCATCCAGAG
GTGTATATTGTTCTTTTGCCAGCGTTAGGAATTACGTCGGAAGTAATGTC
TACAAACGCTAGAAAGCCAATTTTTGGTTACAGGGCAATGGTAGCCTCTA
TTTTGGCGATTGCCTTTTTATCTACTATTGTTTGGGGTCACCATATGTTT
GTTTCTGGTATGAATCCGTTCTTGGGGTCTGTTTTTACTTTTACTACATT
GCTTATTGCTATTCCATC

Synonyms

The feature 'cytochrome c oxidase' has the following synonyms


Synonym
Tk12417

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