abc transporter permease, maker-scaffold441_size170131-snap-gene-0.32 (gene) Tigriopus kingsejongensis

Overview
Nameabc transporter permease
Unique Namemaker-scaffold441_size170131-snap-gene-0.32
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of abc transporter permease vs. L. salmonis genes
Match: EMLSAG00000012517 (supercontig:LSalAtl2s:LSalAtl2s921:94650:95728:1 gene:EMLSAG00000012517 transcript:EMLSAT00000012517 description:"augustus_masked-LSalAtl2s921-processed-gene-1.17")

HSP 1 Score: 130.183 bits (326), Expect = 3.777e-37
Identity = 63/192 (32.81%), Postives = 117/192 (60.94%), Query Frame = 0 
Query:   35 YITVQIYAPD-SGLLHYRAKADIEANGHILFLILIVTIIGTLLECVLLHGLYKRKYRYFKVWYAYTFLAFLLSIFLAFNFILGILEIPSRPETGKNFIQDAMCILIHVVFFFIPEYLLGPRLTPVFIAIMILVHLLLPLLHGYSIYAVYSYLHSYILDDPRMILDLEAASAPPGTVKKCGNLCQKCKLATLE 225
            +I+  +++ D  G L++R +ADIE NG+++FL++  +++G ++E  ++ GL  ++  YF++W+ YT +  +LS  +A NF+  + +   + +   N+  D MCI+ H+ FFFIPE++L P +TP+F+ I+I+ H+ LP+LH  S +AV    H YI+    ++     +SAPP  +    N   + ++   E
Sbjct:   32 FISYNVFSLDRKGQLYFRPRADIERNGYVVFLVVFTSLMGFIIEFYMIFGLILQRPHYFRIWFIYTMICGILSTLIAVNFVASLFKFHDKFKIDDNWFFDGMCIISHMTFFFIPEFMLSPHMTPMFLGILIIFHIALPMLHFGSYFAVKKQFH-YIVRQNFLL-----SSAPPALLLSSDNSNSQSRITEGE 217
The following BLAST results are available for this feature:
BLAST of abc transporter permease vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000125173.777e-3732.81supercontig:LSalAtl2s:LSalAtl2s921:94650:95728:1 g... [more]
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BLAST of abc transporter permease vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of abc transporter permease vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold441_size170131supercontigscaffold441_size170131:151421..153279 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold441_size170131-snap-gene-0.32-mRNA-1maker-scaffold441_size170131-snap-gene-0.32-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold441_size170131:151421..153279+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold441_size170131-snap-gene-0.32 ID=maker-scaffold441_size170131-snap-gene-0.32|Name=abc transporter permease|organism=Tigriopus kingsejongensis|type=gene|length=1859bp|location=Sequence derived from alignment at scaffold441_size170131:151421..153279+ (Tigriopus kingsejongensis)
AGAGGAGCGTTGCTCAGGGATTAAGACGACGAAGCATCGCGATTTTCCAC
AATTATTTTGGTGCTCACAACGTATCTTATGAAGTGTTTGGATATACTAC
AGACCACGAGAGAATGGTGATTTTATCGCAACTTGCTTGGTTTGTTTCGG
AGAAAGCAAAGCAAGCCTGGCACTGATCCCCTACCCGTGTTTTTTTTGGA
GCAGACACCCATTCTTCGTCTGAGAGGCTGAAAGCCATCTCGAATGGCTT
GAAAGCCAAGCCAACCTCGAAGCTGATCAAATCAACGGAGCAAGACGGGA
GAAGAGGACATGTAACCCGGCTCCAGAGAATTTCTCGAATTCAACATGCT
GAAGAAGTGTTGCTTTTGTTTCAATCTCTACTCGGGCTGTCTCCTAATTG
GCCTCTTTCGATTGGCTCAGTGGTTGCTCATCCTATTAGCGACCATCTAT
ATCACAGTTCAAATCTACGCCCCGGACTCAGGGCTGCTCCATTACCGTGC
CAAAGCTGACATAGAAGCTAATGGTAAGAATGTATTCTCTACACATGGGA
ACTCATTTCCAAACAAGAGCCAAGTGCTGTAGCTGTATCTGTCTGGTCTG
TGCTCATTGGACATTCTAATCACGAAGCATCCAGATTCTTTGACCTCACC
ACCTCCACTGGAGTGCCAGGGTGAAAGTAGAAGAAGCAATCAAGCTAGGT
TGAAGCGGAAAAATCAAGCTGTGGTTTGATCTACTTCCGGCACGCTACAG
ATCCCAGCCCAACATTTGTCCATATCCGACAGAATATCCCTTCGTGCTGA
GATATAGGACATATGTGCCTCCTTCTTTCTCTTAACTTGGCCTCGTGGAA
GCACTTAAGCTCGATCATAAGTCCCATCGGACACCCAAATAGACAAAAGC
GTGTTAGATAGCCAATGGCTGGGGTCCAGGTCAATTTGTTCTGGAATGAA
CATCAAAGTCGGTCTTTTTCAGGCCCGACCCTTATGTACTTGATTAAGGT
CCAGTCGAATACATCTGGTCCTCGGGGCCATACAAACTGGTACCACCCTT
GGTAGCTGTATAGTTGCGTTCATTGTCATGGAAATACTATATTGGACACA
TTGTAAGGTGAACCTCTGGATCAGCCTCATTTGCACTAATCACCATCTTC
ATAAAAGCTTCATCATTCAGCTTCTATGAAGCGGGCTTTCCTTGGTCTTG
ATCCAGTACTTTTGAAATAGAATTTGCTCCTGTCGCTGAACATCAAACCC
ACATTATAAAGTACACTATTCGTCAATCCACACTCTTACTTTGCAGGTCA
TATCTTATTTCTGATACTAATTGTTACCATCATTGGAACACTGCTGGAAT
GCGTTCTGTTGCACGGGCTATACAAGCGCAAGTATCGCTACTTCAAGGTC
TGGTACGCCTACACGTTCCTAGCGTTCCTGCTCTCCATCTTCCTGGCGTT
TAACTTCATTCTCGGGATCTTGGAGATTCCCTCGAGGCCAGAGACGGGGA
AGAATTTCATACAAGACGCCATGTGTATCCTCATTCACGTGGTGTTCTTT
TTCATACCCGAGTATCTTCTGGGACCGCGTCTCACCCCCGTGTTCATTGC
CATTATGATCTTGGTCCACTTGCTCTTGCCCCTTTTGCATGGGTACAGCA
TTTACGCGGTCTACTCCTACTTGCACAGTTACATCCTCGATGATCCAAGA
ATGATCTTGGACCTTGAGGCCGCTTCGGCTCCGCCCGGTACTGTCAAGAA
ATGCGGAAACCTTTGCCAGAAATGCAAGCTCGCCACGCTCGAAAAGAACG
GCGGAACCAAAAGAGAGGCAGCAACTCCACTGATCAACGCCATCGAGACC
ACGTGCTAG
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Synonyms
The feature 'abc transporter permease' has the following synonyms
Synonym
Tk02638
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