alpha-arabinofuranosidase, maker-scaffold469_size162558-snap-gene-0.25 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of alpha-arabinofuranosidase vs. L. salmonis genes
Match: EMLSAG00000008697 (supercontig:LSalAtl2s:LSalAtl2s53:1054459:1060191:-1 gene:EMLSAG00000008697 transcript:EMLSAT00000008697 description:"maker-LSalAtl2s53-augustus-gene-10.10") HSP 1 Score: 122.094 bits (305), Expect = 1.259e-32 Identity = 62/114 (54.39%), Postives = 79/114 (69.30%), Query Frame = 0 Query: 79 EGGPSRGDQS---LVDTTTAASYI--VRVVSRNRPSFYWSVDEGIEGYLMEEPEMFRVVNPGLWGQGSISFESVTRPEHYIVHRDGNIFVESGDMSNEDFIRDCSWYARNDIFY 187 E GP RGDQS +TTT + I VRV+S+NRPS+YWS+DEGIEGYLM P ++RVV+PGL G S+SFE RP HY++HRDG +FVE +N F R+ SW R + F+ Sbjct: 75 ERGPQRGDQSPSERPETTTVTTKIEVVRVLSKNRPSYYWSIDEGIEGYLMRTPTIYRVVSPGLHGDNSVSFEVENRPGHYLIHRDGQLFVEE-FRNNPTFKREGSWIIRQNQFF 187 HSP 2 Score: 58.5362 bits (140), Expect = 1.266e-10 Identity = 34/97 (35.05%), Postives = 54/97 (55.67%), Query Frame = 0 Query: 99 IVRVVSRNRPSFYWSV--------DEGIEGYLMEEPEMFRVVNPGLWGQGSISFESVTRPEHYIVHRDGNIFVESGDMSNEDFIRDCSWYARNDIFY 187 +RV SR PS YW V +E + L E +FR+VN GL G+G++SFES +P +++ +R G + E G + D+ R+CS+ + F+ Sbjct: 250 TLRVESRAMPSNYWWVSRPRSDYPNEPLPSALRREWHVFRMVN-GLGGEGTVSFESTLQPGYFLRNRGGILTAERGQSRDGDYRRECSFRVTENKFF 345
BLAST of alpha-arabinofuranosidase vs. nr
Match: gi|1325275620|ref|XP_023322486.1| (collagen alpha-1(IX) chain-like isoform X1 [Eurytemora affinis]) HSP 1 Score: 142.124 bits (357), Expect = 1.216e-35 Identity = 78/186 (41.94%), Postives = 120/186 (64.52%), Query Frame = 0 Query: 14 SSQKQWMLMLPLLLLTL-----GVTGEPKPRPKAKAAGQVDEYYYSEYKEYNYDDN--GQYYYD-ESNYESTNEG---GPSRGDQSLVDTTTAASYI-VRVVSRNRPSFYWSVDEGIEGYLMEEPEMFRVVNPGLWGQGSISFESVTRPEHYIVHRDGNIFVESGDMSNEDFIRDCSWYARNDIFY 187 + + +W++ + +LTL G + R + QV+EY Y++Y NY+ + G+YY + E T G GPSRGDQSL+ T + VRV S+NRP ++W++DEGIEGYLM +PE+F+V++PGL+G+G+ISFES++ P ++ +RDG I++E GD +E F DCSW++R D F+ Sbjct: 2 AGKMKWIVRVSFFILTLEHASCRRQGRKQNRDRRAPDPQVEEYAYTDYDYNNYNYDDLGEYYAEGEIKPVGTELGVSEGPSRGDQSLISPTIPGDEMTVRVSSKNRPGYHWAIDEGIEGYLMNQPELFKVISPGLFGEGTISFESISNPGRFLRNRDGKIYIEEGDEGDEQFKIDCSWFSRMDHFF 187 HSP 2 Score: 64.6994 bits (156), Expect = 9.883e-9 Identity = 35/92 (38.04%), Postives = 59/92 (64.13%), Query Frame = 0 Query: 100 VRVVSRNRPSFYWSVDEG----IEGYLMEEPEMFRVVNPGLWGQGSISFESVTRPEHYIVHRDGNIFVESGDMSNEDFIRDCSWYARNDIFY 187 + V S+ P +W+ ++G EG L E +FR+V+ GLWG ++SFES + P +Y+ R +++VE GDM+N +F ++CS+ AR+ F+ Sbjct: 251 ILVESKAVPQHFWAWNDGNQRDGEGKLELEGHVFRMVS-GLWGDETVSFESSSIPGYYMRSRGTSLWVERGDMNNLEFRKECSFNARDGRFF 341 The following BLAST results are available for this feature:
BLAST of alpha-arabinofuranosidase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 1
BLAST of alpha-arabinofuranosidase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 0
BLAST of alpha-arabinofuranosidase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold469_size162558:98685..101362+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold469_size162558-snap-gene-0.25 ID=maker-scaffold469_size162558-snap-gene-0.25|Name=alpha-arabinofuranosidase|organism=Tigriopus kingsejongensis|type=gene|length=2678bp|location=Sequence derived from alignment at scaffold469_size162558:98685..101362+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'alpha-arabinofuranosidase' has the following synonyms
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