alpha-arabinofuranosidase, maker-scaffold469_size162558-snap-gene-0.25 (gene) Tigriopus kingsejongensis

Overview
Namealpha-arabinofuranosidase
Unique Namemaker-scaffold469_size162558-snap-gene-0.25
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
BLAST of alpha-arabinofuranosidase vs. L. salmonis genes
Match: EMLSAG00000008697 (supercontig:LSalAtl2s:LSalAtl2s53:1054459:1060191:-1 gene:EMLSAG00000008697 transcript:EMLSAT00000008697 description:"maker-LSalAtl2s53-augustus-gene-10.10")

HSP 1 Score: 122.094 bits (305), Expect = 1.259e-32
Identity = 62/114 (54.39%), Postives = 79/114 (69.30%), Query Frame = 0
Query:   79 EGGPSRGDQS---LVDTTTAASYI--VRVVSRNRPSFYWSVDEGIEGYLMEEPEMFRVVNPGLWGQGSISFESVTRPEHYIVHRDGNIFVESGDMSNEDFIRDCSWYARNDIFY 187
            E GP RGDQS     +TTT  + I  VRV+S+NRPS+YWS+DEGIEGYLM  P ++RVV+PGL G  S+SFE   RP HY++HRDG +FVE    +N  F R+ SW  R + F+
Sbjct:   75 ERGPQRGDQSPSERPETTTVTTKIEVVRVLSKNRPSYYWSIDEGIEGYLMRTPTIYRVVSPGLHGDNSVSFEVENRPGHYLIHRDGQLFVEE-FRNNPTFKREGSWIIRQNQFF 187          

HSP 2 Score: 58.5362 bits (140), Expect = 1.266e-10
Identity = 34/97 (35.05%), Postives = 54/97 (55.67%), Query Frame = 0
Query:   99 IVRVVSRNRPSFYWSV--------DEGIEGYLMEEPEMFRVVNPGLWGQGSISFESVTRPEHYIVHRDGNIFVESGDMSNEDFIRDCSWYARNDIFY 187
             +RV SR  PS YW V        +E +   L  E  +FR+VN GL G+G++SFES  +P +++ +R G +  E G   + D+ R+CS+    + F+
Sbjct:  250 TLRVESRAMPSNYWWVSRPRSDYPNEPLPSALRREWHVFRMVN-GLGGEGTVSFESTLQPGYFLRNRGGILTAERGQSRDGDYRRECSFRVTENKFF 345          
BLAST of alpha-arabinofuranosidase vs. nr
Match: gi|1325275620|ref|XP_023322486.1| (collagen alpha-1(IX) chain-like isoform X1 [Eurytemora affinis])

HSP 1 Score: 142.124 bits (357), Expect = 1.216e-35
Identity = 78/186 (41.94%), Postives = 120/186 (64.52%), Query Frame = 0
Query:   14 SSQKQWMLMLPLLLLTL-----GVTGEPKPRPKAKAAGQVDEYYYSEYKEYNYDDN--GQYYYD-ESNYESTNEG---GPSRGDQSLVDTTTAASYI-VRVVSRNRPSFYWSVDEGIEGYLMEEPEMFRVVNPGLWGQGSISFESVTRPEHYIVHRDGNIFVESGDMSNEDFIRDCSWYARNDIFY 187
            + + +W++ +   +LTL        G  + R +     QV+EY Y++Y   NY+ +  G+YY + E     T  G   GPSRGDQSL+  T     + VRV S+NRP ++W++DEGIEGYLM +PE+F+V++PGL+G+G+ISFES++ P  ++ +RDG I++E GD  +E F  DCSW++R D F+
Sbjct:    2 AGKMKWIVRVSFFILTLEHASCRRQGRKQNRDRRAPDPQVEEYAYTDYDYNNYNYDDLGEYYAEGEIKPVGTELGVSEGPSRGDQSLISPTIPGDEMTVRVSSKNRPGYHWAIDEGIEGYLMNQPELFKVISPGLFGEGTISFESISNPGRFLRNRDGKIYIEEGDEGDEQFKIDCSWFSRMDHFF 187          

HSP 2 Score: 64.6994 bits (156), Expect = 9.883e-9
Identity = 35/92 (38.04%), Postives = 59/92 (64.13%), Query Frame = 0
Query:  100 VRVVSRNRPSFYWSVDEG----IEGYLMEEPEMFRVVNPGLWGQGSISFESVTRPEHYIVHRDGNIFVESGDMSNEDFIRDCSWYARNDIFY 187
            + V S+  P  +W+ ++G     EG L  E  +FR+V+ GLWG  ++SFES + P +Y+  R  +++VE GDM+N +F ++CS+ AR+  F+
Sbjct:  251 ILVESKAVPQHFWAWNDGNQRDGEGKLELEGHVFRMVS-GLWGDETVSFESSSIPGYYMRSRGTSLWVERGDMNNLEFRKECSFNARDGRFF 341          
The following BLAST results are available for this feature:
BLAST of alpha-arabinofuranosidase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000086971.259e-3254.39supercontig:LSalAtl2s:LSalAtl2s53:1054459:1060191:... [more]
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BLAST of alpha-arabinofuranosidase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of alpha-arabinofuranosidase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 1
Match NameE-valueIdentityDescription
gi|1325275620|ref|XP_023322486.1|1.216e-3541.94collagen alpha-1(IX) chain-like isoform X1 [Euryte... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold469_size162558supercontigscaffold469_size162558:98685..101362 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold469_size162558-snap-gene-0.25-mRNA-1maker-scaffold469_size162558-snap-gene-0.25-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold469_size162558:98685..101362+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold469_size162558-snap-gene-0.25 ID=maker-scaffold469_size162558-snap-gene-0.25|Name=alpha-arabinofuranosidase|organism=Tigriopus kingsejongensis|type=gene|length=2678bp|location=Sequence derived from alignment at scaffold469_size162558:98685..101362+ (Tigriopus kingsejongensis)
GGAGCGGAGACGACACCATTGATCCCATTGTGTCTTCCTTTTAACAGGGG TCCTGAGAAAACATCCCATGGACCCCGGGCCAAGCCCGCCGACAACTCCC TTGTGACACCCAGCGACCACCAACCAGCCTTACCACTCGGAACCCTCTGA ATGCATCAAACATGGAACCTACAGCAGCAGGAAGCAGGTCAGCCCCATCG GAAAGAAAGCCGTTGACACTCTTTGGGGTGGGGGGTTCGATTTTATCCTT GCCAGGTTGAAATGAGATTGCAAAAAGTACAAAATCTCCCAACAAGCTTC AGTAGGCGAGGACAAAGCTGTTGTAGGAGTTGGCCTCAAATGCGATCTTT GGGTATGTTATTTCATTTGCGACAAAACTGTAAGCGTTCATCAGTCTTGT TGGCAAACTTCCAAACCGATCATAAATGTAAAAAGCTGTAATCGATATTG AAACGTTAGAGTGGCTGTAACATTAAGCTTTTTGATCTAACTTGATTTGG TTTTGAACGCTATATTTGCAACAAAATTACCTGGTTCATCGTAGGTAAAA TGGGATATACTTCAGTCATTCCTGACCCATGCGATCCCTGAAGCCACTGA ATAGTACGGTCTCAAGACAAATATGGACGAATTAAAAATGTCTGGTTTTA CGATGTACAGTATATCAATTCCAAAATGGGCCGAGAATGAACTCGCCATT TACACAATTGACTTCTATAGCGCTACAAGTATTACAACTTGACTCTCTCA TCAGCATAGTACTACCGTACTGTCTGAGGCGAATCGACGTCGAATCCAAT TGGTTCCCAAGGTTAAAACAGTTTTTTTCCGAAATCTGCATCGAGTGCCA AATGGAACGCTCTTTTATTAATCAGGACAACAACACATTATAAAAGGATG AATTTGTTGAATCAACAAACGTGGGCATGTACATTACAGCAGATAGTTGC ACCATTCAGGTTATTAAAATAATGTATCCAATTATGGACTTCGAATTAAA AAAAATGAGGCAAAGCGACTTTGGGACAGGTCCTATTTTCTAATCCAGGT TTCATCATTTGGGCGGGgggggGGTCGTATAAGTAGGCCTTTAGAAATGA GGGATCAGGCGATGAAAGAGTAATGCAAGTCGAATGAGTATCAGCAAACT TCATTAGTAATCCCAATGATATTTTGAGACAAATCACGCTTGAAGGATCA AACTCAGTAATATTTTTTCCCCCACACATGCATACTTTTGAGCATCAGAA CATAATTGGATGGAGCGAGTCGATTCAGGGCTGCGTGTTTTATTGGTATC CTTGGAGCACTGTCATCTTGGGAATGATTCCCATTGCTAATACCCTCGCC AATACACTCGATCTGTCACCAGATGTGAACTCCCTCAAAGCGGGATAGTT GACCCAGTTCTCATTATTGCTCCACTTCTGTGTTGTACAGATGTTTTGTC AAAGGGCGGGATATTTTTTGCAATGCAATGTCGCTCAAGGCTACACACGA TCTCCAGATGCTCATCCGGTGACTCCATTTTTCAGCTCTCAAAAGCAATG GATGCTCATGCTGCCGCTCCTCCTTCTCACCCTCGGAGTAACCGGAGAGC CCAAGCCCCGGCCCAAAGCCAAGGCCGCCGGACGTAATGGCCTTTATGCT GGGTTGAGGGGTTCGAACACCCTGACCAAAATTGTTGGCCTATTTTTCAG AGGTTGACGAATACTACTACTCGGAGTACAAGGAGTACAACTACGATGAC AATGGCCAATACTACTATGACGAGTCCAACTACGAAAGCACCAATGAGGG TACATTGAAACGATTGGCTCTAAGTTTGGGAAGATGAAAACTGGCAGCTT TGGTATTTTCTGGCGTGAACTTCTTGACGAGGCCCCGGAGAAAAAGTCAA TGGGAGAGACGTTTTGTTCAATTATTTCAGAGTTGACCACAATTCGGGGA CTTTCCCATGGTTGAAAGTTTCGTTCCTTGGTCAAAATCTGGAGATTTCC TTGAAAATTGGGACAGTCTGGCGAGACTAGTTTTATTTTGCCCTATTTTA AGACCATTTGCAAATTATTAGGGAATCCTAACCTTTATTGACAAATCAAA CAACTTTTGGTCATATTGCAGTAACCCAAACTCGTATATTTTGAAACATT CGCAACCAATATGATCAAAACGGAGGGGGGAATAAATTTTGGGGCCTATA AGTTTGCTTTTTTGCTTTTGGGTGCCGGTAATTTGGGCTGATCTTGTCCA TTTTTCGCCACAGAAATTCGGGTGTGAGTCCCAATAGAAAAGGGTTCCAG TGAATCCTTAGCTCAACAGGATTAATCCTTCATTAAACTTGTTCACCTCC AGGAGGCCCCTCAAGAGGGGACCAGTCCCTTGTGGATACCACCACTGCCG CCTCCTATATTGTGAGAGTGGTCTCGAGGAATCGGCCCTCCTTCTACTGG TCCGTCGATGAAGGTATCGAGGGATATTTGATGGAAGAGCCCGAAATGTT CCGAGTGGTCAATCCCGGCCTTTGGGGCCAGGGCTCCATCTCGTTCGAGT CTGTCACCCGACCTGAACATTACATCGTCCACCGGGATGGGAACATATTC GTGGAGAGCGGCGACATGTCCAATGAGGACTTCATTCGCGACTGCTCTTG GTACGCCCGCAACGATATATTTTACCCA
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Synonyms
The feature 'alpha-arabinofuranosidase' has the following synonyms
Synonym
Tk06430
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