orphan nuclear receptor, maker-scaffold491_size156641-snap-gene-0.24 (gene) Tigriopus kingsejongensis

Overview


Name	orphan nuclear receptor
Unique Name	maker-scaffold491_size156641-snap-gene-0.24
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of orphan nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000008543 (supercontig:LSalAtl2s:LSalAtl2s527:163002:172818:1 gene:EMLSAG00000008543 transcript:EMLSAT00000008543 description:"maker-LSalAtl2s527-augustus-gene-1.53")

HSP 1 Score: 423.32 bits (1087), Expect = 2.697e-139
Identity = 210/281 (74.73%), Postives = 232/281 (82.56%), Query Frame = 0

Query:  318 NILRAALTGNSQISTQYKHLFVNRDAEKNSFD--------HMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKITRVIALFRQCKLKMEEYVCLKVIAMVENSDSTSPSLVPIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFYVPFLLNSSI 590
            NILRAALTG+  I  QY+ L      +K  +D          +LIN LI+CDDFEDIATLKNIGELLNQNT+DLQQKLCQIGDSIVYKLVQWTRRLPFY +LPVDVHTKLLTHKWHELLVL  SAYQAIHGS RMGT RTDGEK ELHQEV+TNLVTLQTCLTSMMGKPI+MDQL QDVGNMVEKIT+VIA+FRQ +L MEEYVCLKVIAMV   D  + SL  I++RYL CL+A+  ++ P EP RV  LLVRLPEV+VAA+LLLESKMFYVPFLLNSSI
Sbjct:  512 NILRAALTGSPDIPRQYRGL-SKGPLDKRLYDPSYSPPDESSKLINELIICDDFEDIATLKNIGELLNQNTADLQQKLCQIGDSIVYKLVQWTRRLPFYRDLPVDVHTKLLTHKWHELLVLXXSAYQAIHGSKRMGTTRTDGEKVELHQEVATNLVTLQTCLTSMMGKPISMDQLWQDVGNMVEKITKVIAIFRQFRLTMEEYVCLKVIAMVSQEDLKATSLASIHDRYLNCLKAFTRKNFPREPHRVHDLLVRLPEVQVAASLLLESKMFYVPFLLNSSI 791

HSP 2 Score: 227.254 bits (578), Expect = 3.160e-65
Identity = 114/187 (60.96%), Postives = 126/187 (67.38%), Query Frame = 0

Query:  156 INMEKLWDGDRTQL------------------------------PANAKKLTEG-------TTQEGDDH----IEEESLICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNK--NKSSGKTG 299
            +NMEKLW GDR+QL                              P +   +          +   GD++      ++SL+CMICED+ATGLHYGIITCEGCKGFFKRTVQNKRIY CVADG CEINKAQRNRCQYCRFQKCL KGMVLAAVREDRMPGGRNSGAVYNMYKVKYKK+K  N SSG TG
Sbjct:  203 MNMEKLWAGDRSQLLDKMGPPPSSSTPSFLEMDNKGGLHIXSSXPTSXANINSNNPPPIHQSGGPGDNNNPSSQPQQSLVCMICEDRATGLHYGIITCEGCKGFFKRTVQNKRIYTCVADGECEINKAQRNRCQYCRFQKCLQKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKHKRANSSSGGTG 389

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BLAST of orphan nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000004451 (supercontig:LSalAtl2s:LSalAtl2s231:945915:949068:1 gene:EMLSAG00000004451 transcript:EMLSAT00000004451 description:"snap_masked-LSalAtl2s231-processed-gene-9.18")

HSP 1 Score: 150.599 bits (379), Expect = 1.718e-39
Identity = 116/389 (29.82%), Postives = 186/389 (47.81%), Query Frame = 0

Query:  195 CMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTGGEISTKETHQFDMPCQNINILRAALTGNSQISTQYKHLFVNRDA-------EKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKITRVIALFRQCKLKMEEYVCLKVIAMVENS----DSTSPSLV----PIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVR 568
            C +C DK +G HYGI +CE CKGFFKRTVQNK+ Y C+    C +  + R +C  CRF KCL+ GM L A+REDR  GGR++      Y+  Y          T G  ST  T         I  ++    G+   +T+ K   VN+ +       E  S +H+   +  +      + ++  +  +   ++ S+  Q L  + D  +YKLV+W + LP +  + VD    LL + W ELLV +   Y+++      G IR       L Q+ S NL + ++     +G           V   +EK+       R+ K+   EYV LKVI ++ ++    D+T    V        + ++ L++Y   H+P  P++  +LL+R+PE++
Sbjct:  155 CPVCGDKISGFHYGIFSCESCKGFFKRTVQNKKNYVCLRGSQCPVTISTRKKCPACRFDKCLNIGMKLEAIREDRTRGGRST------YQCSYNL-------PTTGVCSTNST--------TIPTIKRESRGDDH-NTETK---VNQSSGIPVLLHEIMSVEHLWFWSTSMPSLSLNNSSSNTDTSQ---ESPSNPVQTLTLLADKRLYKLVRWCKSLPLFKNILVDDQITLLINAWCELLVFSC-CYKSVDSP---GFIR-------LSQDKSLNLESAKS-----LG-----------VNECIEKMLNFSDQLRRLKVDHYEYVSLKVILLLTSAPLYVDATGLKEVDQVRESQEQVVQALQSYTNFHYPSMPNKFGELLLRMPELQ 488

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BLAST of orphan nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000008902 (supercontig:LSalAtl2s:LSalAtl2s554:572309:581835:1 gene:EMLSAG00000008902 transcript:EMLSAT00000008902 description:"maker-LSalAtl2s554-snap-gene-5.6")

HSP 1 Score: 135.576 bits (340), Expect = 3.753e-34
Identity = 61/96 (63.54%), Postives = 71/96 (73.96%), Query Frame = 0

Query:  186 DHIEEESLICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNS-GAVY 280
            D +EE   +C +C DK +G HYG++TCE CKGFFKRTVQNK++Y CVAD  C I+K QR RC YCRFQKCL  GM L AVR DRM GGRN  G +Y
Sbjct:  180 DGMEE---LCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVADRSCVIDKTQRKRCPYCRFQKCLDVGMKLEAVRHDRMRGGRNKFGPMY 272

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BLAST of orphan nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000009969 (supercontig:LSalAtl2s:LSalAtl2s651:302705:304416:-1 gene:EMLSAG00000009969 transcript:EMLSAT00000009969 description:"maker-LSalAtl2s651-augustus-gene-2.5")

HSP 1 Score: 133.65 bits (335), Expect = 8.686e-34
Identity = 101/417 (24.22%), Postives = 171/417 (41.01%), Query Frame = 0

Query:  172 NAKKLTEGTTQEGDDHIEEESLICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTGGEISTKETHQFDMPCQNINILRAALTGNSQISTQYKHLFVNRDAEKNSFDHMQLI--NNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTS-AYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKITRVIALFRQCKLKMEEYVCLKVIAMVENSDS--TSPSLVPIYNRYLKC-LRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFYV 582
            N+  LT  +   G +   E  ++C++C DK++G HYG  TCEGCK FFKR V+    + C +   C +++  RN+CQ+CRF+KCL+ GM   AV++ R      S  ++N     +  N                                  TG+S +ST    L        + +  +Q+   NN+I  D+                        +C+    +++  ++W R +P + EL +     LL   W EL VL  S  +  +H +  +             + V+                   MD +R       E++ ++ AL    ++   E  CLK I +        T  +L+       +C L  Y   HHP +P R  KLL+RLP +R  ++ ++E ++F++
Sbjct:   54 NSSSLTAPSPSSGTNSSTE--ILCVVCGDKSSGKHYGQFTCEGCKSFFKRCVRRSLTFQCRSKKSCPVDQHHRNQCQHCRFKKCLNMGMKKEAVQKGRT--TTTSAPIFNYSNDLFSPN----------------------------------TGSSYLSTYISLLLRAEPYTTSQYGQLQMAASNNIIGIDN------------------------ICEFAARLLFSAIEWARNIPGFPELQITDQVGLLRMVWSELFVLNASQCHMPLHVAPLLVAXGLHASPLAADRXVA------------------FMDHIRV----FQEQVEKLKAL----QVDAAEXACLKAIVLFSTDPPGLTDITLIEQLQEKSQCALDDYCKIHHPTKPSRFGKLLLRLPSLRTVSSAVIE-QLFFI 381

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BLAST of orphan nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000013004 (supercontig:LSalAtl2s:LSalAtl2s98:942409:953748:1 gene:EMLSAG00000013004 transcript:EMLSAT00000013004 description:"augustus_masked-LSalAtl2s98-processed-gene-9.1")

HSP 1 Score: 115.161 bits (287), Expect = 5.106e-27
Identity = 49/83 (59.04%), Postives = 59/83 (71.08%), Query Frame = 0

Query:  192 SLICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGR 274
            SL+C +C D A   HYG+ TCEGCKGFFKRTVQ    Y C+AD +C ++K +RNRCQ+CRFQKCL  GMV   VR D + G R
Sbjct:  406 SLLCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLADKNCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRR 488

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BLAST of orphan nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000008071 (supercontig:LSalAtl2s:LSalAtl2s47:304551:317770:1 gene:EMLSAG00000008071 transcript:EMLSAT00000008071 description:"snap_masked-LSalAtl2s47-processed-gene-3.10")

HSP 1 Score: 112.849 bits (281), Expect = 1.169e-26
Identity = 78/249 (31.33%), Postives = 113/249 (45.38%), Query Frame = 0

Query:  186 DHIEEES---LICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTGGEISTKETHQFDMPCQNINILRAALTGNSQISTQYKHLFVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLT 431
            D I+EE      C++C D A+G HYG+ +CE CK FFKRT+Q    Y   A   CEINK +R  CQ CRFQKCL  GM+   VR DR+ GGR           KY++                E+  +  P       +  L  N       K L V R  E  +F    L+N  +   +++ I T+  + +  N+           IG       ++W +++P +  L ++   KLL   W E+LVL+
Sbjct:  259 DIIKEEEGQRRTCLVCGDIASGFHYGVSSCEACKAFFKRTIQGNIEYTXPASNECEINKRRRKACQACRFQKCLRMGMLKEGVRLDRVRGGRQ----------KYRR--------------MIESSPYIQPPP-----KKTLEDN-------KLLQVLRHCEPEAF----LVNMDMTLPNYK-IRTISTLSDFYNREL---------IG------TIEWAKQIPGFSNLTINDQMKLLQSSWSEILVLS 451

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BLAST of orphan nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000001919 (supercontig:LSalAtl2s:LSalAtl2s132:616435:622808:1 gene:EMLSAG00000001919 transcript:EMLSAT00000001919 description:"augustus_masked-LSalAtl2s132-processed-gene-6.5")

HSP 1 Score: 105.531 bits (262), Expect = 1.649e-24
Identity = 45/79 (56.96%), Postives = 56/79 (70.89%), Query Frame = 0

Query:  194 ICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPG 272
             C IC D+A+G HYG+ +CEGCKGFFKRTV+ +  Y C  +  C I+K QRNRCQYCR+ KCL  GM   AV+E+R  G
Sbjct:   90 FCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELTYACRENRDCVIDKRQRNRCQYCRYMKCLDTGMKREAVQEERHRG 168

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BLAST of orphan nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000012486 (supercontig:LSalAtl2s:LSalAtl2s91:348479:353390:-1 gene:EMLSAG00000012486 transcript:EMLSAT00000012486 description:"maker-LSalAtl2s91-snap-gene-4.8")

HSP 1 Score: 104.375 bits (259), Expect = 1.295e-23
Identity = 76/309 (24.60%), Postives = 129/309 (41.75%), Query Frame = 0

Query:  195 CMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVL-------------AAVREDRMP---------------------GGRNSGAVYNMYKVKYKKNKNKSSGKTGGEISTKETHQFDMPCQNINILRAAL-------------TGNSQISTQYKHL---FVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKL--------------------CQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTS 433
            C++C D+A+G HYG I+CEGCKGFFKR+++ +  Y C  +  CE+ K  RNRCQYCR QKCL  GM +             +AV+ +R P                       +NS  VY++Y      ++N S G +   I +  +H  ++   +  +L +               T    ++  Y HL    V    EK+       +    +C+D E+          ++++ + +Q  L                    C+    +++  V W R +P + +L  +    L+ + W ++ VL  S
Sbjct:  220 CVVCGDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRIMKQIYESYLAPRVSAVQSERRPIVPANVSNAVTAALAENISISNAKNSSPVYHIYDSPTLLSRN-SLGPSSDSILS--SHDTNVKAASTIVLGSGGIGSGGIGDEDNTSTDAGSLNGDYSHLDASHVLAAREKSLISXAMDVMTKTICEDEEEEPNEDINNSSIDESETIIQDSLVNFKLSTPSPTPFYLNVHFICETASRLLFLSVHWVRTIPCFGQLSYESQVGLVRNSWSDIFVLGMS 525

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BLAST of orphan nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000009941 (supercontig:LSalAtl2s:LSalAtl2s649:484085:485655:-1 gene:EMLSAG00000009941 transcript:EMLSAT00000009941 description:"maker-LSalAtl2s649-snap-gene-4.11")

HSP 1 Score: 99.7525 bits (247), Expect = 6.332e-23
Identity = 66/260 (25.38%), Postives = 103/260 (39.62%), Query Frame = 0

Query:  170 PANAKKLTEGTTQEGDDHIEEESLI-CMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTGGEISTKETHQFDMPCQNINILRAALTGNSQISTQYKHLFVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELL 428
            PA +  +           + E S I C++C DK++G HYG  TCEGCK FFKR+V+    Y C    +C +++  RN+CQ+CR +KC   GM   AV+  R+P                        G  G   S+                   L+G + +S+    L        + +  M +  N ++         ++NI               C+    +++  V+WTR +P + EL V     LL   W EL 
Sbjct:   57 PAISSGIVASIEHAKPSELSESSDINCVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYQCRGSKNCPVDQHHRNQCQHCRLKKCFKMGMRREAVQRGRVP--------------------PTPQGVFGLGFSSD-----------------PLSGTTYLSSYISMLLRAEPYPTSRYGQMPMPTNGMI--------GIENI---------------CEFAARLLFSAVEWTRSIPGFPELQVTDQVALLRLVWSELF 256

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BLAST of orphan nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000007361 (supercontig:LSalAtl2s:LSalAtl2s418:374353:376789:1 gene:EMLSAG00000007361 transcript:EMLSAT00000007361 description:"maker-LSalAtl2s418-augustus-gene-3.13")

HSP 1 Score: 98.9821 bits (245), Expect = 4.804e-22
Identity = 67/252 (26.59%), Postives = 115/252 (45.63%), Query Frame = 0

Query:  195 CMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTGGEISTKETHQFDMPCQNINILRAALTGNSQISTQYKHLFVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLL-THKWHELLVLTTSAYQAIHGSTRMG 445
            C +C D+ATG HYG  +C+GCKGFF+R+V+ +R+Y C  +  C +NK +RN C+YCR + C+  GM  +AV+ +R              ++  +K  +     +  E++       D   Q  ++L + + GN  I+T       N   E+N   + QL             A++++IG  + +                +  LV+W + +  + EL VD   +LL  H    LL+        ++G   +G
Sbjct:  151 CAVCGDRATGKHYGAASCDGCKGFFRRSVRKERVYGCRQNRACIVNKDKRNNCRYCRLKMCIKAGMKKSAVQNER-------------DRISCRKKTSAKDMNSANELTVTALLNADKVGQK-SLLNSIVGGN--INTN------NFITEENVLANKQL-------------ASIEDIGHSMKEQ---------------LIVLVEWAKHIKAFCELSVDDQVRLLRAHSGEHLLMGVAKRSMNLNGILLLG 352

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BLAST of orphan nuclear receptor vs. SwissProt
Match: gi|52788288|sp|Q90416.2|RXRGA_DANRE (RecName: Full=Retinoic acid receptor RXR-gamma-A; AltName: Full=Nuclear receptor subfamily 2 group B member 3-A; AltName: Full=Retinoic acid receptor RXR-alpha; AltName: Full=Retinoid X receptor alpha; AltName: Full=Retinoid X receptor gamma-A)

HSP 1 Score: 150.984 bits (380), Expect = 1.238e-38
Identity = 105/393 (26.72%), Postives = 173/393 (44.02%), Query Frame = 0

Query:  194 ICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTGGEISTKETHQFDMPCQNINILRAALTGNSQISTQYKHLFVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKI-TRVIALFRQCKLKMEEYVCLKVIAMVENSDS---TSPSLV-PIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFY 581
            IC IC D+++G HYG+ +CEGCKGFFKRT++    Y C  +  C+I+K QRNRCQYCR+QKCL  GM   AV+E+                      + +   ++  E+ +  +   +MP + I  L A L                   E  +  +M+                       ++ +T+D    +CQ  D  ++ LV+W +R+P + +LP+D    LL   W+ELL+ + S       + + G +   G    LH   S+                         VG++ +++ T +++  R  ++   E  CL+ I +  N D+   ++PS V  +  +    L  Y   ++P +P R  KLL+RLP +R      LE   F+
Sbjct:  116 ICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDNKDCQIDKRQRNRCQYCRYQKCLAMGMKREAVQEE----------------------RQRGRERSDNEVDSSSSFNEEMPVEKI--LDAELA-----------------VEPKTEAYME---------------------SSMSNSTNDPVTNICQAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSV---TVKDGILLATG----LHVHRSS--------------------AHSAGVGSIFDRVLTELVSKMRDMQMDKTELGCLRAIVLF-NPDAKGLSNPSEVEALREKVYASLEGYTKHNYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFF 418

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BLAST of orphan nuclear receptor vs. SwissProt
Match: gi|52783388|sp|Q7SYN5.1|RXRBA_DANRE (RecName: Full=Retinoic acid receptor RXR-beta-A; AltName: Full=Nuclear receptor subfamily 2 group B member 2-A; AltName: Full=Retinoid X receptor beta-A)

HSP 1 Score: 151.369 bits (381), Expect = 1.534e-38
Identity = 110/394 (27.92%), Postives = 179/394 (45.43%), Query Frame = 0

Query:  194 ICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTGGEISTKETHQFDMPCQNINILRAALTGNSQISTQYKHLFVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQL-RQDVGNMVEKI-TRVIALFRQCKLKMEEYVCLKVIAMVENSDS---TSPSLVPIY-NRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFY 581
            +C IC D+++G HYG+ +CEGCKGFFKRTV+    Y C  +  C ++K QRNRCQYCR+QKCL  GM    V+++R               V+ ++ +NK   +  GE+ +      +MP +   IL A +                                       E    L   G     + +D    +CQ  D  ++ LV+W +R+P + EL +D    LL   W+ELL+ + S +++I  + + G +   G    LH       V   +  ++ +G     +     +VG + +++ T +++  R  ++   E  CL+ I +  N D+   +SPS V +   +    L AY  Q +P +  R  KLL+RLP +R      LE   F+
Sbjct:  124 LCAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKDCLVDKRQRNRCQYCRYQKCLAMGMKREVVQDER------------QRSVQEERQRNK---ERDGEVESSSAANEEMPVE--KILEAEMA-------------------------------------VEQKTELHADGSSGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELSLDDQVILLRAGWNELLIASFS-HRSI--TVKDGILLATG----LH-------VHRNSAHSAGVGAIFDRESAHNAEVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIILF-NPDAKGLSSPSEVELLREKVYASLEAYCKQRYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFF 448

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BLAST of orphan nuclear receptor vs. SwissProt
Match: gi|82200328|sp|Q6DHP9.1|RXRGB_DANRE (RecName: Full=Retinoic acid receptor RXR-gamma-B; AltName: Full=Nuclear receptor subfamily 2 group B member 3-B; AltName: Full=Retinoid X receptor gamma-B)

HSP 1 Score: 149.058 bits (375), Expect = 6.688e-38
Identity = 106/393 (26.97%), Postives = 163/393 (41.48%), Query Frame = 0

Query:  194 ICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTGGEISTKETHQFDMPCQNINILRAALTGNSQISTQYKHLFVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKI-TRVIALFRQCKLKMEEYVCLKVIAMVENSD----STSPSLVPIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFY 581
            IC IC D+++G HYG+ +CEGCKGFFKRT++    Y C     C I+K QRNRCQYCR+QKCL  GM   AV+E+R  G                        K+  E+ T      DMP   I         ++++S + K       +  NS                                T+D    +C   D  ++ LV+W +R+P + +LP+D    LL   W+ELL+ + S     H S  +      G    +H+  + +                        VG++  ++ T +++  +  ++   E  CL+ I +  N D    S S  +  +  +    L  Y  Q +P +P R  KLL+RLP +R      LE   F+
Sbjct:  127 ICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDIKECLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKE----------------------KSDTEVETTSRFNEDMPVDKIL--------DAELSVEPKTETYTESSPSNS--------------------------------TNDPVTNICHAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFS-----HRSITVKDGILLGTGLHVHRSSAHS----------------------AGVGSIFNRVLTELVSKMKDMQMDKTELGCLRAIVLF-NPDAKGLSNSLEVEALREKVYASLETYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFF 429

[Close]

BLAST of orphan nuclear receptor vs. SwissProt
Match: gi|167016572|sp|Q0GFF6.2|RXRG_PIG (RecName: Full=Retinoic acid receptor RXR-gamma; AltName: Full=Nuclear receptor subfamily 2 group B member 3; AltName: Full=Retinoid X receptor gamma)

HSP 1 Score: 148.673 bits (374), Expect = 9.118e-38
Identity = 109/393 (27.74%), Postives = 174/393 (44.27%), Query Frame = 0

Query:  194 ICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTGGEISTKETHQFDMPCQNINILRAALTGNSQISTQYKHLFVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKI-TRVIALFRQCKLKMEEYVCLKVIAMVENSDS---TSPSLV-PIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFY 581
            IC IC D+++G HYG+ +CEGCKGFFKRT++   IY C  +  C I+K QRNRCQYCR+QKCL  GM   AV+E+R                       +S  +   E     +   DMP +   IL A L                 + +  S+  M + N                       +T+D    +C   D  ++ LV+W +R+P + +L ++    LL   W+ELL+ + S ++++  S + G +   G    LH   S+                         VG++ +++ T +++  +  ++   E  CL+ I +  N D+   ++PS V  +  +    L AY  Q +P +P R  KLL+RLP +R      LE   F+
Sbjct:  138 ICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEER----------------------QRSRERAESEAECASSGHEDMPVE--RILEAELA---------------VEPKTESYGDMNMEN-----------------------STNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFS-HRSV--SVQDGILLATG----LHVHRSS--------------------AHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLF-NPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFF 440

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BLAST of orphan nuclear receptor vs. SwissProt
Match: gi|75062013|sp|Q5REL6.1|RXRG_PONAB (RecName: Full=Retinoic acid receptor RXR-gamma; AltName: Full=Nuclear receptor subfamily 2 group B member 3; AltName: Full=Retinoid X receptor gamma)

HSP 1 Score: 148.673 bits (374), Expect = 1.006e-37
Identity = 109/393 (27.74%), Postives = 174/393 (44.27%), Query Frame = 0

Query:  194 ICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTGGEISTKETHQFDMPCQNINILRAALTGNSQISTQYKHLFVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKI-TRVIALFRQCKLKMEEYVCLKVIAMVENSDS---TSPSLV-PIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFY 581
            IC IC D+++G HYG+ +CEGCKGFFKRT++   IY C  +  C I+K QRNRCQYCR+QKCL  GM   AV+E+R                       +S  +   E     +   DMP +   IL A L                 + +  S+  M + N                       +T+D    +C   D  ++ LV+W +R+P + +L ++    LL   W+ELL+ + S ++++  S + G +   G    LH   S+                         VG++ +++ T +++  +  ++   E  CL+ I +  N D+   ++PS V  +  +    L AY  Q +P +P R  KLL+RLP +R      LE   F+
Sbjct:  138 ICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEER----------------------QRSRERAESEAECASSGHEDMPVE--RILEAELA---------------VEPKTESYGDMNMEN-----------------------STNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFS-HRSV--SVQDGILLATG----LHVHRSS--------------------AHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLF-NPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFF 440

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BLAST of orphan nuclear receptor vs. nr
Match: gi|657600392|gb|AID52857.1| (hormone receptor 4 [Tigriopus japonicus])

HSP 1 Score: 734.176 bits (1894), Expect = 0.000e+0
Identity = 373/505 (73.86%), Postives = 414/505 (81.98%), Query Frame = 0

Query:   99 HHRLSEQAQ---KISSAVDGMLSLQSANTVARV------SSSGSSMEKVFPVCPRSEGSSYTRGIPINMEKLWDGDRTQLPANAKKLTEGTTQEGDDHIEEESLICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKT----GGEISTKETHQFDMPCQNINILRAALTGNSQISTQYKHLFVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKITRVIALFRQCKLKMEEYVCLKVIAMVENSDSTSPSLVPIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFYVPFLLNSSI 590
            HH +    Q   K+S+AVDG+LSLQS   + R       S+S +S+ +   V P     SY RG+PINMEKLW+GD++QLP      +E T  +     E+E LICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVA+G CEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYN+YKVKYKK+K  S G++       I+  E  QF+   QNINILRAALTGN +IS+ YK +        N  +++ LIN LI CD+FED+ATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLV+WTRRLPFY ELPVD+HTKLLTHKWHELLVLTTSAYQAIHGS RMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKIT+VIALFRQCKLKMEEYVCLKVIAMV  +D+ SPSLV I+NRYL CL+A+A QHHP EP+RV+ LLVRLPEVRVAA LLLESKMFYVPFLLNSSI
Sbjct:  160 HHDMGSNEQHALKMSNAVDGLLSLQSGGPLTRFPQEMPQSTSQTSITEEIRVNP----PSYARGLPINMEKLWEGDKSQLPTQTTAKSEETDGKVGLAEEDEPLICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVAEGSCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNLYKVKYKKHKKSSPGRSEMYGSKPINDLEVAQFNSHSQNINILRAALTGNVEISSHYKSILGRCQNHVNDQENINLINELIACDEFEDMATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVEWTRRLPFYKELPVDIHTKLLTHKWHELLVLTTSAYQAIHGSRRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKITKVIALFRQCKLKMEEYVCLKVIAMVATADNPSPSLVTIHNRYLACLKAFAQQHHPQEPNRVENLLVRLPEVRVAAGLLLESKMFYVPFLLNSSI 660

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BLAST of orphan nuclear receptor vs. nr
Match: gi|242009214|ref|XP_002425386.1| (orphan nuclear receptor nr6a1, putative [Pediculus humanus corporis] >gi|212509180|gb|EEB12648.1| orphan nuclear receptor nr6a1, putative [Pediculus humanus corporis])

HSP 1 Score: 538.11 bits (1385), Expect = 2.508e-180
Identity = 268/468 (57.26%), Postives = 336/468 (71.79%), Query Frame = 0

Query:  155 PINMEKLWDGDRTQLPANAKKLT----------------EGTTQEG----DDHIEEESLICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNK------SSGKTGGEISTKETHQFDMPCQNIN--ILRAALTGNSQISTQYKHL----FVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKITRVIALFRQCKLKMEEYVCLKVIAMVENSDSTSPSLVPIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFYVPFLLNSSI 590
            P+NME+LW GD TQLP + +                   +G T  G    D   +E+ +ICMICED+ATGLHYGIITCEGCKGFFKRTVQN+R+Y CVADG+CEI KAQRNRCQYCRF+KC+ +GMVL AVREDRMPGGRNSGAVYN+YKV  ++  NK      ++ + G +  +  + +  +P   +N  IL+ ALT  S++    + L      +RD        + +I  L+ CD+F+DIATL+N+ +LL+   SDL +KLCQIGDSIVYKLVQWT+RLPFY ELPV+VHT+LLTHKWHELLVLTTSAYQAIHG  ++ +  T G++A+  QEVS NLVTLQTCLTSMMG+PITMDQLRQDVG MVEKIT V  +FR+ KL+MEEYVCLKVI M+      S  L  I +RY+ CL+++     P +P R  +LL+RLPE++ AA+LLLESKMFYVPFLLNS+I
Sbjct:  310 PLNMERLWAGDLTQLPVSQQNQALNLALPPGDWPRDGRPQGITIIGEPKHDPEDDEQPMICMICEDRATGLHYGIITCEGCKGFFKRTVQNRRVYTCVADGNCEITKAQRNRCQYCRFKKCIEQGMVLQAVREDRMPGGRNSGAVYNLYKVLMRERDNKFLNVIFNNNEKGNQQKSSISSEQTLPSHIVNGTILKTALTNPSEVVHLRQRLDNTVSSSRDRTFPLDTILNMIQALVDCDEFQDIATLRNLEDLLDHK-SDLSEKLCQIGDSIVYKLVQWTKRLPFYLELPVEVHTRLLTHKWHELLVLTTSAYQAIHGVHKLSSTSTAGQEADFTQEVSNNLVTLQTCLTSMMGRPITMDQLRQDVGLMVEKITHVTLMFRRVKLRMEEYVCLKVITMLNQGRGGSNELEAIQDRYMMCLKSFVEHSFPQQPARFHELLLRLPEIQSAASLLLESKMFYVPFLLNSAI 776

[Close]

BLAST of orphan nuclear receptor vs. nr
Match: gi|1325293207|ref|XP_023330232.1| (hormone receptor 4-like isoform X1 [Eurytemora affinis])

HSP 1 Score: 542.732 bits (1397), Expect = 5.507e-179
Identity = 277/483 (57.35%), Postives = 343/483 (71.01%), Query Frame = 0

Query:  156 INMEKLWDGDRTQLPANAKK----LTEGTTQEGDDHIEEES--LICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTG-------GEISTKETHQFDMP-------------------------------CQNINILRAALTGNSQISTQYKHLFVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKITRVIALFRQCKLKMEEYVCLKVIAMV-ENSDSTSPSLVPIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFYVPFLLNSSIVGS 593
            ++M +LW G+  QLPA A+         + + G+  ++E+   +ICMIC+DKATGLHYGIITCEGCKGFFKRTVQNKR+Y CVADG+CEINKAQRNRCQYCRFQKCL +GMVLAAVREDRMPGGRNSGAVYNMYKVKYKK K     + G         +   E  Q D P                                 +INIL+A LTG+ +   QY+     R  E+   D ++LI  LI CDDFEDI+T +++ +LL+ + ++L  +L +IGD+IV KLVQWTRRLPFY ++PV++HT LLT+KWHELLVLTTS+YQAI+GS RMGT R+DGE AELHQEV+TNLVTLQTCLTSMMG+PITMDQLRQDVGNMVEK+T+VI   R  +L +EEYVCLKV+AM+ E+       L  I++RY+ CL+ Y   + P +P+RV +LLV+LPEV+ AA LLL SKMFYVPFLLNS+I  S
Sbjct:  544 VDMAELWKGNLDQLPAQAQPSGSIFNRDSGEPGNRILDEDDQPMICMICDDKATGLHYGIITCEGCKGFFKRTVQNKRVYTCVADGNCEINKAQRNRCQYCRFQKCLERGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKQKKHPKPQMGQFNVMSKPSMKNIEFEQMDSPKSLLNLREEQKTASFQSTSLSSPSSPHPDTISPSINILKAVLTGSQEGLPQYRQFDRARRRERYE-DSLRLIQELIDCDDFEDISTFRDVNDLLDHSNAELSDRLSRIGDNIVVKLVQWTRRLPFYEDIPVNIHTSLLTNKWHELLVLTTSSYQAINGSRRMGTTRSDGETAELHQEVATNLVTLQTCLTSMMGRPITMDQLRQDVGNMVEKVTKVITSLRNFRLTIEEYVCLKVVAMLTEDGLVQHSELEEIHDRYMNCLKIYTEWNFPTQPNRVQELLVKLPEVQEAAGLLLASKMFYVPFLLNSTISSS 1025

[Close]

BLAST of orphan nuclear receptor vs. nr
Match: gi|1325293212|ref|XP_023330233.1| (hormone receptor 4-like isoform X2 [Eurytemora affinis])

HSP 1 Score: 541.576 bits (1394), Expect = 1.403e-178
Identity = 269/481 (55.93%), Postives = 341/481 (70.89%), Query Frame = 0

Query:  156 INMEKLWDGDRTQLPANAKK----LTEGTTQEGDDHIEEES--LICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNM----------------YKVKYK--------------------KNKNKSSGKTGGEISTKETHQFDMPCQNINILRAALTGNSQISTQYKHLFVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKITRVIALFRQCKLKMEEYVCLKVIAMV-ENSDSTSPSLVPIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFYVPFLLNSSIVGS 593
            ++M +LW G+  QLPA A+         + + G+  ++E+   +ICMIC+DKATGLHYGIITCEGCKGFFKRTVQNKR+Y CVADG+CEINKAQRNRCQYCRFQKCL +GMVLAAVREDRMPGGRNSGAVYNM                + V  K                    + + K++      +S+  +   D    +INIL+A LTG+ +   QY+     R  E+   D ++LI  LI CDDFEDI+T +++ +LL+ + ++L  +L +IGD+IV KLVQWTRRLPFY ++PV++HT LLT+KWHELLVLTTS+YQAI+GS RMGT R+DGE AELHQEV+TNLVTLQTCLTSMMG+PITMDQLRQDVGNMVEK+T+VI   R  +L +EEYVCLKV+AM+ E+       L  I++RY+ CL+ Y   + P +P+RV +LLV+LPEV+ AA LLL SKMFYVPFLLNS+I  S
Sbjct:  544 VDMAELWKGNLDQLPAQAQPSGSIFNRDSGEPGNRILDEDDQPMICMICDDKATGLHYGIITCEGCKGFFKRTVQNKRVYTCVADGNCEINKAQRNRCQYCRFQKCLERGMVLAAVREDRMPGGRNSGAVYNMYKYKKQKKHPKPQMGQFNVMSKPSMKNIEFEQMDSPKSLLNLREEQKTASFQSTSLSSPSSPHPDTISPSINILKAVLTGSQEGLPQYRQFDRARRRERYE-DSLRLIQELIDCDDFEDISTFRDVNDLLDHSNAELSDRLSRIGDNIVVKLVQWTRRLPFYEDIPVNIHTSLLTNKWHELLVLTTSSYQAINGSRRMGTTRSDGETAELHQEVATNLVTLQTCLTSMMGRPITMDQLRQDVGNMVEKVTKVITSLRNFRLTIEEYVCLKVVAMLTEDGLVQHSELEEIHDRYMNCLKIYTEWNFPTQPNRVQELLVKLPEVQEAAGLLLASKMFYVPFLLNSTISSS 1023

[Close]

BLAST of orphan nuclear receptor vs. nr
Match: gi|939683917|ref|XP_014286562.1| (PREDICTED: hormone receptor 4 isoform X5 [Halyomorpha halys])

HSP 1 Score: 523.857 bits (1348), Expect = 1.648e-176
Identity = 277/478 (57.95%), Postives = 333/478 (69.67%), Query Frame = 0

Query:  146 EGSSYTRGI--------PINMEKLWDGDRTQLPANAKKLT------------EGTTQEGDDHIEEESLICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKV-------KYKKNKNKSSGKTGGEISTKETHQFDMPCQNIN--ILRAALTGNSQISTQYKHL----FVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKITRVIALFRQCKLKMEEYVCLKVIAMVENSDSTSPSLVPIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFYVPFLLNSSI 590
            EGSS + G          +NME+LW GD +QLP  A++LT            +   QEGD   E++ +ICMICEDKATGLHYGIITCEGCKGFFKRTVQN+R+Y CVADG CEI KAQRNRCQYCRF+KC+ +GMVL AVREDRMPGGRNSGAVYN+YKV         +  + K     G  + + E     MP   +N  IL+ ALT  S++    + L      +RD   +    + +I  LI CD+F+DIATL+N+ +LL+   SDL  KL QIGDSIVYKLVQWT+RLPFY ELPV+VHTKLLTH WHELLVLTTSAYQAIHG+ R+ +  +DG +A   QEVS NL TLQTCLTSMMG+PITMDQLRQDVG MVEKIT V  +FR+ KL M+EYVCLKVI M+  S   +  L  +  RY+ CLR Y     P +P+R   LL+RLPEV+ AA+LLLESKMFYVPFLLNS+I
Sbjct:  168 EGSSISPGAVTGSASGRSLNMERLWAGDLSQLPG-AQQLTALNLSWAKPGLHQDKQQEGDIEEEDQPMICMICEDKATGLHYGIITCEGCKGFFKRTVQNRRVYTCVADGVCEITKAQRNRCQYCRFKKCIEQGMVLQAVREDRMPGGRNSGAVYNLYKVKYKKHKKSVRNGQMKGQADKGKPLISPEPASH-MPPHLVNGTILKTALTNPSEVVHLRQRLDSAVSSSRDRALSVDTTLSVIQTLIDCDEFQDIATLRNLEDLLDHK-SDLSDKLMQIGDSIVYKLVQWTKRLPFYLELPVEVHTKLLTHTWHELLVLTTSAYQAIHGAHRLVSTGSDGTEANFTQEVSNNLCTLQTCLTSMMGRPITMDQLRQDVGLMVEKITYVTLMFRRIKLTMQEYVCLKVIIMLNPSRGDANELEAMQERYMTCLRTYVEHSFPNQPNRFHDLLLRLPEVQSAASLLLESKMFYVPFLLNSTI 642

[Close]

BLAST of orphan nuclear receptor vs. nr
Match: gi|939683920|ref|XP_014286563.1| (PREDICTED: hormone receptor 4 isoform X6 [Halyomorpha halys])

HSP 1 Score: 523.087 bits (1346), Expect = 2.235e-176
Identity = 277/478 (57.95%), Postives = 333/478 (69.67%), Query Frame = 0

Query:  146 EGSSYTRGI--------PINMEKLWDGDRTQLPANAKKLT------------EGTTQEGDDHIEEESLICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKV-------KYKKNKNKSSGKTGGEISTKETHQFDMPCQNIN--ILRAALTGNSQISTQYKHL----FVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKITRVIALFRQCKLKMEEYVCLKVIAMVENSDSTSPSLVPIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFYVPFLLNSSI 590
            EGSS + G          +NME+LW GD +QLP  A++LT            +   QEGD   E++ +ICMICEDKATGLHYGIITCEGCKGFFKRTVQN+R+Y CVADG CEI KAQRNRCQYCRF+KC+ +GMVL AVREDRMPGGRNSGAVYN+YKV         +  + K     G  + + E     MP   +N  IL+ ALT  S++    + L      +RD   +    + +I  LI CD+F+DIATL+N+ +LL+   SDL  KL QIGDSIVYKLVQWT+RLPFY ELPV+VHTKLLTH WHELLVLTTSAYQAIHG+ R+ +  +DG +A   QEVS NL TLQTCLTSMMG+PITMDQLRQDVG MVEKIT V  +FR+ KL M+EYVCLKVI M+  S   +  L  +  RY+ CLR Y     P +P+R   LL+RLPEV+ AA+LLLESKMFYVPFLLNS+I
Sbjct:  161 EGSSISPGAVTGSASGRSLNMERLWAGDLSQLPG-AQQLTALNLSWAKPGLHQDKQQEGDIEEEDQPMICMICEDKATGLHYGIITCEGCKGFFKRTVQNRRVYTCVADGVCEITKAQRNRCQYCRFKKCIEQGMVLQAVREDRMPGGRNSGAVYNLYKVKYKKHKKSVRNGQMKGQADKGKPLISPEPASH-MPPHLVNGTILKTALTNPSEVVHLRQRLDSAVSSSRDRALSVDTTLSVIQTLIDCDEFQDIATLRNLEDLLDHK-SDLSDKLMQIGDSIVYKLVQWTKRLPFYLELPVEVHTKLLTHTWHELLVLTTSAYQAIHGAHRLVSTGSDGTEANFTQEVSNNLCTLQTCLTSMMGRPITMDQLRQDVGLMVEKITYVTLMFRRIKLTMQEYVCLKVIIMLNPSRGDANELEAMQERYMTCLRTYVEHSFPNQPNRFHDLLLRLPEVQSAASLLLESKMFYVPFLLNSTI 635

[Close]

BLAST of orphan nuclear receptor vs. nr
Match: gi|939683914|ref|XP_014286561.1| (PREDICTED: hormone receptor 4 isoform X4 [Halyomorpha halys])

HSP 1 Score: 523.472 bits (1347), Expect = 3.363e-176
Identity = 277/478 (57.95%), Postives = 333/478 (69.67%), Query Frame = 0

Query:  146 EGSSYTRGI--------PINMEKLWDGDRTQLPANAKKLT------------EGTTQEGDDHIEEESLICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKV-------KYKKNKNKSSGKTGGEISTKETHQFDMPCQNIN--ILRAALTGNSQISTQYKHL----FVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKITRVIALFRQCKLKMEEYVCLKVIAMVENSDSTSPSLVPIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFYVPFLLNSSI 590
            EGSS + G          +NME+LW GD +QLP  A++LT            +   QEGD   E++ +ICMICEDKATGLHYGIITCEGCKGFFKRTVQN+R+Y CVADG CEI KAQRNRCQYCRF+KC+ +GMVL AVREDRMPGGRNSGAVYN+YKV         +  + K     G  + + E     MP   +N  IL+ ALT  S++    + L      +RD   +    + +I  LI CD+F+DIATL+N+ +LL+   SDL  KL QIGDSIVYKLVQWT+RLPFY ELPV+VHTKLLTH WHELLVLTTSAYQAIHG+ R+ +  +DG +A   QEVS NL TLQTCLTSMMG+PITMDQLRQDVG MVEKIT V  +FR+ KL M+EYVCLKVI M+  S   +  L  +  RY+ CLR Y     P +P+R   LL+RLPEV+ AA+LLLESKMFYVPFLLNS+I
Sbjct:  181 EGSSISPGAVTGSASGRSLNMERLWAGDLSQLPG-AQQLTALNLSWAKPGLHQDKQQEGDIEEEDQPMICMICEDKATGLHYGIITCEGCKGFFKRTVQNRRVYTCVADGVCEITKAQRNRCQYCRFKKCIEQGMVLQAVREDRMPGGRNSGAVYNLYKVKYKKHKKSVRNGQMKGQADKGKPLISPEPASH-MPPHLVNGTILKTALTNPSEVVHLRQRLDSAVSSSRDRALSVDTTLSVIQTLIDCDEFQDIATLRNLEDLLDHK-SDLSDKLMQIGDSIVYKLVQWTKRLPFYLELPVEVHTKLLTHTWHELLVLTTSAYQAIHGAHRLVSTGSDGTEANFTQEVSNNLCTLQTCLTSMMGRPITMDQLRQDVGLMVEKITYVTLMFRRIKLTMQEYVCLKVIIMLNPSRGDANELEAMQERYMTCLRTYVEHSFPNQPNRFHDLLLRLPEVQSAASLLLESKMFYVPFLLNSTI 655

[Close]

BLAST of orphan nuclear receptor vs. nr
Match: gi|939683912|ref|XP_014286560.1| (PREDICTED: hormone receptor 4 isoform X3 [Halyomorpha halys])

HSP 1 Score: 523.087 bits (1346), Expect = 4.452e-176
Identity = 277/478 (57.95%), Postives = 333/478 (69.67%), Query Frame = 0

Query:  146 EGSSYTRGI--------PINMEKLWDGDRTQLPANAKKLT------------EGTTQEGDDHIEEESLICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKV-------KYKKNKNKSSGKTGGEISTKETHQFDMPCQNIN--ILRAALTGNSQISTQYKHL----FVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKITRVIALFRQCKLKMEEYVCLKVIAMVENSDSTSPSLVPIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFYVPFLLNSSI 590
            EGSS + G          +NME+LW GD +QLP  A++LT            +   QEGD   E++ +ICMICEDKATGLHYGIITCEGCKGFFKRTVQN+R+Y CVADG CEI KAQRNRCQYCRF+KC+ +GMVL AVREDRMPGGRNSGAVYN+YKV         +  + K     G  + + E     MP   +N  IL+ ALT  S++    + L      +RD   +    + +I  LI CD+F+DIATL+N+ +LL+   SDL  KL QIGDSIVYKLVQWT+RLPFY ELPV+VHTKLLTH WHELLVLTTSAYQAIHG+ R+ +  +DG +A   QEVS NL TLQTCLTSMMG+PITMDQLRQDVG MVEKIT V  +FR+ KL M+EYVCLKVI M+  S   +  L  +  RY+ CLR Y     P +P+R   LL+RLPEV+ AA+LLLESKMFYVPFLLNS+I
Sbjct:  185 EGSSISPGAVTGSASGRSLNMERLWAGDLSQLPG-AQQLTALNLSWAKPGLHQDKQQEGDIEEEDQPMICMICEDKATGLHYGIITCEGCKGFFKRTVQNRRVYTCVADGVCEITKAQRNRCQYCRFKKCIEQGMVLQAVREDRMPGGRNSGAVYNLYKVKYKKHKKSVRNGQMKGQADKGKPLISPEPASH-MPPHLVNGTILKTALTNPSEVVHLRQRLDSAVSSSRDRALSVDTTLSVIQTLIDCDEFQDIATLRNLEDLLDHK-SDLSDKLMQIGDSIVYKLVQWTKRLPFYLELPVEVHTKLLTHTWHELLVLTTSAYQAIHGAHRLVSTGSDGTEANFTQEVSNNLCTLQTCLTSMMGRPITMDQLRQDVGLMVEKITYVTLMFRRIKLTMQEYVCLKVIIMLNPSRGDANELEAMQERYMTCLRTYVEHSFPNQPNRFHDLLLRLPEVQSAASLLLESKMFYVPFLLNSTI 659

[Close]

BLAST of orphan nuclear receptor vs. nr
Match: gi|939683905|ref|XP_014286557.1| (PREDICTED: hormone receptor 4 isoform X1 [Halyomorpha halys])

HSP 1 Score: 523.472 bits (1347), Expect = 6.255e-176
Identity = 273/463 (58.96%), Postives = 328/463 (70.84%), Query Frame = 0

Query:  153 GIPINMEKLWDGDRTQLPANAKKLT------------EGTTQEGDDHIEEESLICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKV-------KYKKNKNKSSGKTGGEISTKETHQFDMPCQNIN--ILRAALTGNSQISTQYKHL----FVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKITRVIALFRQCKLKMEEYVCLKVIAMVENSDSTSPSLVPIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFYVPFLLNSSI 590
            G  +NME+LW GD +QLP  A++LT            +   QEGD   E++ +ICMICEDKATGLHYGIITCEGCKGFFKRTVQN+R+Y CVADG CEI KAQRNRCQYCRF+KC+ +GMVL AVREDRMPGGRNSGAVYN+YKV         +  + K     G  + + E     MP   +N  IL+ ALT  S++    + L      +RD   +    + +I  LI CD+F+DIATL+N+ +LL+   SDL  KL QIGDSIVYKLVQWT+RLPFY ELPV+VHTKLLTH WHELLVLTTSAYQAIHG+ R+ +  +DG +A   QEVS NL TLQTCLTSMMG+PITMDQLRQDVG MVEKIT V  +FR+ KL M+EYVCLKVI M+  S   +  L  +  RY+ CLR Y     P +P+R   LL+RLPEV+ AA+LLLESKMFYVPFLLNS+I
Sbjct:  214 GRSLNMERLWAGDLSQLPG-AQQLTALNLSWAKPGLHQDKQQEGDIEEEDQPMICMICEDKATGLHYGIITCEGCKGFFKRTVQNRRVYTCVADGVCEITKAQRNRCQYCRFKKCIEQGMVLQAVREDRMPGGRNSGAVYNLYKVKYKKHKKSVRNGQMKGQADKGKPLISPEPASH-MPPHLVNGTILKTALTNPSEVVHLRQRLDSAVSSSRDRALSVDTTLSVIQTLIDCDEFQDIATLRNLEDLLDHK-SDLSDKLMQIGDSIVYKLVQWTKRLPFYLELPVEVHTKLLTHTWHELLVLTTSAYQAIHGAHRLVSTGSDGTEANFTQEVSNNLCTLQTCLTSMMGRPITMDQLRQDVGLMVEKITYVTLMFRRIKLTMQEYVCLKVIIMLNPSRGDANELEAMQERYMTCLRTYVEHSFPNQPNRFHDLLLRLPEVQSAASLLLESKMFYVPFLLNSTI 673

[Close]

BLAST of orphan nuclear receptor vs. nr
Match: gi|939683908|ref|XP_014286558.1| (PREDICTED: hormone receptor 4 isoform X2 [Halyomorpha halys])

HSP 1 Score: 523.087 bits (1346), Expect = 7.625e-176
Identity = 277/478 (57.95%), Postives = 333/478 (69.67%), Query Frame = 0

Query:  146 EGSSYTRGI--------PINMEKLWDGDRTQLPANAKKLT------------EGTTQEGDDHIEEESLICMICEDKATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYCRFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKV-------KYKKNKNKSSGKTGGEISTKETHQFDMPCQNIN--ILRAALTGNSQISTQYKHL----FVNRDAEKNSFDHMQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQWTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTDGEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKITRVIALFRQCKLKMEEYVCLKVIAMVENSDSTSPSLVPIYNRYLKCLRAYATQHHPLEPDRVDKLLVRLPEVRVAAALLLESKMFYVPFLLNSSI 590
            EGSS + G          +NME+LW GD +QLP  A++LT            +   QEGD   E++ +ICMICEDKATGLHYGIITCEGCKGFFKRTVQN+R+Y CVADG CEI KAQRNRCQYCRF+KC+ +GMVL AVREDRMPGGRNSGAVYN+YKV         +  + K     G  + + E     MP   +N  IL+ ALT  S++    + L      +RD   +    + +I  LI CD+F+DIATL+N+ +LL+   SDL  KL QIGDSIVYKLVQWT+RLPFY ELPV+VHTKLLTH WHELLVLTTSAYQAIHG+ R+ +  +DG +A   QEVS NL TLQTCLTSMMG+PITMDQLRQDVG MVEKIT V  +FR+ KL M+EYVCLKVI M+  S   +  L  +  RY+ CLR Y     P +P+R   LL+RLPEV+ AA+LLLESKMFYVPFLLNS+I
Sbjct:  194 EGSSISPGAVTGSASGRSLNMERLWAGDLSQLPG-AQQLTALNLSWAKPGLHQDKQQEGDIEEEDQPMICMICEDKATGLHYGIITCEGCKGFFKRTVQNRRVYTCVADGVCEITKAQRNRCQYCRFKKCIEQGMVLQAVREDRMPGGRNSGAVYNLYKVKYKKHKKSVRNGQMKGQADKGKPLISPEPASH-MPPHLVNGTILKTALTNPSEVVHLRQRLDSAVSSSRDRALSVDTTLSVIQTLIDCDEFQDIATLRNLEDLLDHK-SDLSDKLMQIGDSIVYKLVQWTKRLPFYLELPVEVHTKLLTHTWHELLVLTTSAYQAIHGAHRLVSTGSDGTEANFTQEVSNNLCTLQTCLTSMMGRPITMDQLRQDVGLMVEKITYVTLMFRRIKLTMQEYVCLKVIIMLNPSRGDANELEAMQERYMTCLRTYVEHSFPNQPNRFHDLLLRLPEVQSAASLLLESKMFYVPFLLNSTI 668

The following BLAST results are available for this feature:

BLAST of orphan nuclear receptor vs. L. salmonis genes
BLAST of orphan nuclear receptor vs. SwissProt
BLAST of orphan nuclear receptor vs. nr

BLAST of orphan nuclear receptor vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 25


Match Name	E-value	Identity	Description
EMLSAG00000008543	2.697e-139	74.73	supercontig:LSalAtl2s:LSalAtl2s527:163002:172818:1...	[more]
EMLSAG00000004451	1.718e-39	29.82	supercontig:LSalAtl2s:LSalAtl2s231:945915:949068:1...	[more]
EMLSAG00000008902	3.753e-34	63.54	supercontig:LSalAtl2s:LSalAtl2s554:572309:581835:1...	[more]
EMLSAG00000009969	8.686e-34	24.22	supercontig:LSalAtl2s:LSalAtl2s651:302705:304416:-...	[more]
EMLSAG00000013004	5.106e-27	59.04	supercontig:LSalAtl2s:LSalAtl2s98:942409:953748:1 ...	[more]
EMLSAG00000008071	1.169e-26	31.33	supercontig:LSalAtl2s:LSalAtl2s47:304551:317770:1 ...	[more]
EMLSAG00000001919	1.649e-24	56.96	supercontig:LSalAtl2s:LSalAtl2s132:616435:622808:1...	[more]
EMLSAG00000012486	1.295e-23	24.60	supercontig:LSalAtl2s:LSalAtl2s91:348479:353390:-1...	[more]
EMLSAG00000009941	6.332e-23	25.38	supercontig:LSalAtl2s:LSalAtl2s649:484085:485655:-...	[more]
EMLSAG00000007361	4.804e-22	26.59	supercontig:LSalAtl2s:LSalAtl2s418:374353:376789:1...	[more]

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BLAST of orphan nuclear receptor vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|52788288\|sp\|Q90416.2\|RXRGA_DANRE	1.238e-38	26.72	RecName: Full=Retinoic acid receptor RXR-gamma-A; ...	[more]
gi\|52783388\|sp\|Q7SYN5.1\|RXRBA_DANRE	1.534e-38	27.92	RecName: Full=Retinoic acid receptor RXR-beta-A; A...	[more]
gi\|82200328\|sp\|Q6DHP9.1\|RXRGB_DANRE	6.688e-38	26.97	RecName: Full=Retinoic acid receptor RXR-gamma-B; ...	[more]
gi\|167016572\|sp\|Q0GFF6.2\|RXRG_PIG	9.118e-38	27.74	RecName: Full=Retinoic acid receptor RXR-gamma; Al...	[more]
gi\|75062013\|sp\|Q5REL6.1\|RXRG_PONAB	1.006e-37	27.74	RecName: Full=Retinoic acid receptor RXR-gamma; Al...	[more]

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BLAST of orphan nuclear receptor vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|657600392\|gb\|AID52857.1\|	0.000e+0	73.86	hormone receptor 4 [Tigriopus japonicus]	[more]
gi\|242009214\|ref\|XP_002425386.1\|	2.508e-180	57.26	orphan nuclear receptor nr6a1, putative [Pediculus...	[more]
gi\|1325293207\|ref\|XP_023330232.1\|	5.507e-179	57.35	hormone receptor 4-like isoform X1 [Eurytemora aff...	[more]
gi\|1325293212\|ref\|XP_023330233.1\|	1.403e-178	55.93	hormone receptor 4-like isoform X2 [Eurytemora aff...	[more]
gi\|939683917\|ref\|XP_014286562.1\|	1.648e-176	57.95	PREDICTED: hormone receptor 4 isoform X5 [Halyomor...	[more]
gi\|939683920\|ref\|XP_014286563.1\|	2.235e-176	57.95	PREDICTED: hormone receptor 4 isoform X6 [Halyomor...	[more]
gi\|939683914\|ref\|XP_014286561.1\|	3.363e-176	57.95	PREDICTED: hormone receptor 4 isoform X4 [Halyomor...	[more]
gi\|939683912\|ref\|XP_014286560.1\|	4.452e-176	57.95	PREDICTED: hormone receptor 4 isoform X3 [Halyomor...	[more]
gi\|939683905\|ref\|XP_014286557.1\|	6.255e-176	58.96	PREDICTED: hormone receptor 4 isoform X1 [Halyomor...	[more]
gi\|939683908\|ref\|XP_014286558.1\|	7.625e-176	57.95	PREDICTED: hormone receptor 4 isoform X2 [Halyomor...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold491_size156641	supercontig	scaffold491_size156641:8337..11777 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	F:binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
maker-scaffold491_size156641-snap-gene-0.24-mRNA-1	maker-scaffold491_size156641-snap-gene-0.24-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold491_size156641:8337..11777+

gene from alignment at scaffold491_size156641:8337..11777+

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>maker-scaffold491_size156641-snap-gene-0.24 ID=maker-scaffold491_size156641-snap-gene-0.24|Name=orphan nuclear receptor|organism=Tigriopus kingsejongensis|type=gene|length=3441bp|location=Sequence derived from alignment at scaffold491_size156641:8337..11777+ (Tigriopus kingsejongensis)
GTGACACGAACGAAGGGACGTATGATGCCGACCTGCAGCATAATTCCGTG
AGCAACAGTCTGAGCGTGAGTTCCTCGTTCATGGGCGTGTCGCCCATGTC
CGAGAAACCGCCGTCCATCCACGAAAGCAGTCTCATAACCAAAGACCATC
ATCACCACCACCACCATCATCGGAACACCTTGAAATGGGCCAAGAACTGC
AATCTGGCCGTGTCCACATCACTCCCAACCTCGGTCCCTGCGCCAGAATC
TCCTCCCAAGTACATGGTTTCCCCACTCTATCCCAACTCCATGGTGGTTA
GACAGGACGAACATCACTATGAGGAGCACCATAGGCTCTCCGAGCAGGCC
CAGAAGATCTCTTCGGCTGTGGATGGAATGCTTAGTTTGCAGTCCGCGAA
TACCGTCGCCCGCGTCTCGTCCTCGGGGTCGTCGATGGAAAAAGTATTCC
CCGTGTGTCCCAGATCCGAGGGCTCGTCCTACACCCGGGGCATTCCCATC
AACATGGAAAAGCTATGGGACGGAGATCGGACCCAACTCCCAGCCAACGC
CAAGAAACTGACTGAGGTAACAATCCCGGGCCATGGCCCTCTCGAGACCC
GTGGGCTGTGATGGCCCAGTCTGATCTGTGTATAAACCGTGGATCTTTTT
GTGAATACAGGGAACAACGCAGGAGGGTGACGACCATATTGAGGAGGAAT
CACTGATATGCATGATTTGCGAAGACAAAGCGACTGGTCTTCATTATGGA
ATCATAACGTGTGAAGGGTGAGTGGATTTGTATGCGGGCTATTTCTGCCA
TTTACTCCATCGGGTGCCCAACCCCCTAAGTTAGCTTGTCCATGAAGTAA
GGAGCGAAAACGAATTGATCCCATAGTGAGTTGAAAAGTTGGGGTCTGAC
TGAAATTAATGGAGGGAATCGACCGGAATGAATCTTAGCTAGAGTGTCCT
TGGGGTTGATATCTCTCTTTTTTGGCCCGGCTGATCTGAGCTGGCCGATA
GCAGTCCTATGTGCCAAGTGAACTGATTTGTGTTATTTTTCTTTCATGCT
TAAAGATGCAAGGGATTTTTCAAGAGAACTGTCCAGAACAAACGCATCTA
TAATTGTGTGGCCGATGGGCATTGTGAAATCAACAAAGCGCAAAGGAATC
GATGCCAATATTGTCGGTTTCAAAAGTGTCTTCATAAGGGAATGGTTCTT
GCAGGTAATTGCCTATCTCACTGGCAACCCAATGTCGGCCCAATCAATGC
TGGTTCCATTTCTAGCTGTTCGTGAAGACCGAATGCCTGGTGGTCGAAAT
TCGGGGGCTGTCTACAACATGTATAAGGTGAGTGTACGAAAGCCGGTCGG
TCACCTTATGCCCCCCCCCCTGCAGGCCATAATGTGGGTGATTCCATTCC
AGGTCAAGTACAAAAAGAATAAGAACAAATCATCCGGGAAGACAGGGGGC
GAGATTTCCACCAAGGAGACGCATCAGTTTGACATGCCCTGTCAAAATAT
AAACATACTTCGAGCTGCGTTAACTGGAAACTCTCAGGTAACGATTCCTA
GCGTCAGGAGGATTGAATGGTTTGCACACCAAGTGTCTGCACCATGCTCC
GGTTTTGAGATTGGGCTAGCTTTTGATCACGTCGCTTTTCTCTGCAGATT
TCCACACAATATAAACACTTATTTGTCAATCGAGATGCCGAAAAGAATTC
CTTTGATCACATGCAACTGATCAATAATCTCATTGTTTGCGATGACTTTG
AAGACATTGCCACTTTGAAGGTGAGTGTGAATGGCAGCCCAAGTGTTCAT
TGGAACACAGATGTGAAAGCGATGGATCTCCACGAGGGATTAGAGATGGT
TTCGTCATGGGTTCGGTTCCTTTCTAGAACATCGGCGAACTTCTCAATCA
AAACACATCTGACTTGCAACAGAAACTTTGTCAAATTGGAGATTCAATTG
TGTACAAACTAGTACAGTGGACCAGGCGGCTGCCATTCTATCACGAGCTT
CCGGTGGACGTGCACACAAAATTGCTAACTCACAAATGGCATGAACTACT
GGTTCTGACCACGTCCGCGTATCAAGCAATACACGGGTCCACACGAATGG
GCACAATTAGAACGGACGGGGAAAAGGCCGAGTTGCACCAGGAGGTAAGC
CCTACGATTCTTCTTGTAGACCAGAATGGAGTGTTATCCCAGTTCCATGT
TGTTTTATTTCACTCACGCTACCTTTCCATTGCTACCTCAGGTGTCGACG
AATCTCGTGACTCTGCAAACCTGTCTGACGTCAATGATGGGCAAGCCAAT
CACCATGGATCAACTGAGACAAGATGTCGGGAACATGGTGGAAAAAATCA
CCCGAGTCATAGCCCTTTTCCGACAATGCAAGCTGAAAATGGAAGAATAT
GTTTGTCTCAAAGTCATCGCAATGGTTGAAAATTCCGGTACGACCCCCCC
TCCCCCTAGTCGCCATCACGATATCAAGTCTCACGCCCGTTTCTTCCCTC
ACTTTACAGACAGTACTTCACCGTCCTTGGTGCCAATTTACAATAGATAC
CTTAAGTGCCTCCGAGCCTATGCAACACAACACCATCCACTGGAGCCTGA
TCGAGTGGACAAACTACTAGTCCGATTGCCTGAGGTACGTGTCCGGGGCC
AGGGGGAGTAGTACGCAGGCATCATGATCTGACGGTTTCCATCGATTCTC
TTGCAGGTTCGTGTGGCAGCCGCATTACTTTTAGAAAGTAAAATGTTTTA
TGTGCCATTCTTACTTAATTCGTCCATTGTTGGTTCTTAGAGAGCAATCT
GCGAGGGTGGGATTGGCTCGTCTGGGGACGACTTATTTATTGCTCTCAAC
ATGTTAGTAGGTTTATAAGGTTTGCCAGTGTTTTTTACATTTTTGTATGT
TGTTAATAATAAATTTCACTTCGCATCCTGCGGGAGACATTTTGAATGAG
CCCTGTGTTGGTGCCTTTGTTTCATCTGTCTCACCCGCCGGCCTCGTCGT
GGGTGAGTCGATGCAGTTGGAGCTTCGCCTCCTCGATGACTTCGGGGGGA
AACTTGGCCAACTCCGCGACCTCCACGCCGAAACTTTGGGTAGCTCGGCC
CGCCACAATCTGGTAGAGGAGGGTGAAGCTACCATCTTGCACGGCCGCGG
CGCAGTTCATGTTGAAACAAGTCGGATGGCTCTGGTCGATGTCCGACAGC
TCGTGAAAGTGGGTGGCGAACAAGGTCACGGCCCGGATCTGGCTCACGAT
GTGCTCGCAAATGGCCCAAGCCAGCCCGAAGCCGTCTTGAGTCGAGGTGC
CCCGACCCAGTTCGTCGATGAGCACGAGGCTCTTCTCGGTCGAGTGGTTG
AGGATGGCCTTGATGTCGAGCATCTCCTTGAGGAAGGTGGACGAGCCGTC
CACGAGCGAGTCGTCGGCCCCAATCCGGACCGAAATGGCGT

Synonyms

The feature 'orphan nuclear receptor' has the following synonyms


Synonym
Tk05482

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