AGAP009045-PA, maker-scaffold671_size114370-snap-gene-0.30 (gene) Tigriopus kingsejongensis

Overview
NameAGAP009045-PA
Unique Namemaker-scaffold671_size114370-snap-gene-0.30
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
BLAST of AGAP009045-PA vs. SwissProt
Match: gi|74949008|sp|Q9W3T5.1|SMIM4_DROME (RecName: Full=Small integral membrane protein 4)

HSP 1 Score: 77.7962 bits (190), Expect = 1.488e-19
Identity = 38/68 (55.88%), Postives = 50/68 (73.53%), Query Frame = 0
Query:   12 LLQRLPGR-RFGVYRILPLFFFMGAALEYTMIHWHVGEVNFYRTYKKKMALDIVLKEERLVQSGQARA 78
            LL   PG+ RFGVYR LPLFF +GA LE++MI+W VGE NFYRT+K++ A + V +++ L    QARA
Sbjct:   11 LLDSWPGKKRFGVYRFLPLFFLLGAGLEFSMINWTVGETNFYRTFKRRQAKNYVEEQQHL----QARA 74          
BLAST of AGAP009045-PA vs. SwissProt
Match: gi|205830728|sp|Q8C1Q6.2|SMIM4_MOUSE (RecName: Full=Small integral membrane protein 4; AltName: Full=Small nucleolar RNA host gene 8)

HSP 1 Score: 57.3806 bits (137), Expect = 1.705e-11
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 0
Query:   13 LQRLPGR-RFGVYRILPLFFFMGAALEYTMIHWHVGEVNFYRTYKKKMA 60
            LQR+PG+ RFG+YR LP FF +G A+E+ MI   VG+  FY  Y++K +
Sbjct:   11 LQRVPGKQRFGIYRFLPFFFVLGGAMEWIMIKVRVGQETFYDVYRRKAS 59          
BLAST of AGAP009045-PA vs. SwissProt
Match: gi|205830727|sp|Q8WVI0.2|SMIM4_HUMAN (RecName: Full=Small integral membrane protein 4)

HSP 1 Score: 56.225 bits (134), Expect = 3.458e-11
Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 0
Query:   11 NLLQRLPGR-RFGVYRILPLFFFMGAALEYTMIHWHVGEVNFYRTYKKKMA 60
             +LQR+PG+ RFG+YR LP FF +G  +E+ MI   VG+  FY  Y++K +
Sbjct:    9 RILQRVPGKQRFGIYRFLPFFFVLGGTMEWIMIKVRVGQETFYDVYRRKAS 59          
BLAST of AGAP009045-PA vs. nr
Match: gi|826437081|ref|XP_012529535.1| (PREDICTED: small integral membrane protein 4 [Monomorium pharaonis])

HSP 1 Score: 92.4337 bits (228), Expect = 7.053e-23
Identity = 43/65 (66.15%), Postives = 53/65 (81.54%), Query Frame = 0
Query:    6 NERLANLLQRLPGRRFGVYRILPLFFFMGAALEYTMIHWHVGEVNFYRTYKKKMALDIVLKEERL 70
            + RL  LL +LPG+RFG YR+LPLFFF GAALEY+MIHW+VGEVNFY+ YK+K   ++V  EERL
Sbjct:    5 SRRLKKLLHKLPGKRFGEYRLLPLFFFFGAALEYSMIHWYVGEVNFYKIYKRKRVEELV--EERL 67          
BLAST of AGAP009045-PA vs. nr
Match: gi|118791522|ref|XP_319797.3| (AGAP009045-PA [Anopheles gambiae str. PEST] >gi|116117642|gb|EAA15012.4| AGAP009045-PA [Anopheles gambiae str. PEST])

HSP 1 Score: 87.4261 bits (215), Expect = 7.698e-21
Identity = 41/73 (56.16%), Postives = 56/73 (76.71%), Query Frame = 0
Query:    1 MIVRRNERLANLLQRLPGRR-FGVYRILPLFFFMGAALEYTMIHWHVGEVNFYRTYKKKMALDIVLKEERLVQ 72
            MI+R+++ L  LL R PG+R  G+YR LP+FF +GAALE++MIHW VGE NFY T+KK+ A +IV ++ RL Q
Sbjct:    1 MIIRKSKTLKELLDRWPGKRTLGIYRFLPIFFGLGAALEFSMIHWRVGETNFYNTFKKRQAKEIVEEKLRLHQ 73          
BLAST of AGAP009045-PA vs. nr
Match: gi|568259434|gb|ETN67355.1| (hypothetical protein AND_000840 [Anopheles darlingi])

HSP 1 Score: 86.6557 bits (213), Expect = 1.339e-20
Identity = 41/71 (57.75%), Postives = 53/71 (74.65%), Query Frame = 0
Query:    1 MIVRRNERLANLLQRLPGRR-FGVYRILPLFFFMGAALEYTMIHWHVGEVNFYRTYKKKMALDIVLKEERL 70
            MI+R++ R+  LL   PG+R  GVYR LP+FF +GAALE++MIHW VGE NFY T+KK+ A DIV +  RL
Sbjct:    1 MIIRKSARVKKLLDLWPGKRALGVYRFLPIFFGLGAALEFSMIHWRVGETNFYNTFKKRQAKDIVAERLRL 71          
BLAST of AGAP009045-PA vs. nr
Match: gi|322788544|gb|EFZ14172.1| (hypothetical protein SINV_02837, partial [Solenopsis invicta])

HSP 1 Score: 85.1149 bits (209), Expect = 5.338e-20
Identity = 39/66 (59.09%), Postives = 51/66 (77.27%), Query Frame = 0
Query:    8 RLANLLQRLPGRRFGVYRILPLFFFMGAALEYTMIHWHVGEVNFYRTYKKKMALDIVLKEERLVQS 73
            RL  L+ +LPG+RFG YR+LPLFF +GA LE++MI+W VGEVNFY+TYK +   ++V  EERL Q 
Sbjct:    4 RLKRLINKLPGKRFGEYRLLPLFFVLGAVLEFSMINWQVGEVNFYKTYKHRKVEELV--EERLKQE 67          
BLAST of AGAP009045-PA vs. nr
Match: gi|1173904534|gb|OQR72836.1| (small integral membrane protein-like [Tropilaelaps mercedesae])

HSP 1 Score: 83.1889 bits (204), Expect = 8.506e-19
Identity = 35/68 (51.47%), Postives = 52/68 (76.47%), Query Frame = 0
Query:    1 MIVRRNERLANLLQRLPGRR-FGVYRILPLFFFMGAALEYTMIHWHVGEVNFYRTYKKKMALDIVLKE 67
            M+ +RN  ++ LL ++PG++ FG YR +P+FFF GAALE++MIHW VGE NFY+TYKK++  +   +E
Sbjct:   34 MLRQRNSPISRLLDKIPGKQLFGPYRFMPIFFFAGAALEFSMIHWAVGETNFYKTYKKRVVRETAERE 101          
BLAST of AGAP009045-PA vs. nr
Match: gi|157116410|ref|XP_001658463.1| (small integral membrane protein 4 [Aedes aegypti] >gi|1218210966|ref|XP_021712289.1| small integral membrane protein 4 [Aedes aegypti] >gi|108876487|gb|EAT40712.1| AAEL007576-PA [Aedes aegypti])

HSP 1 Score: 82.0333 bits (201), Expect = 1.103e-18
Identity = 40/71 (56.34%), Postives = 53/71 (74.65%), Query Frame = 0
Query:    1 MIVRRNERLANLLQRLPGRRF-GVYRILPLFFFMGAALEYTMIHWHVGEVNFYRTYKKKMALDIVLKEERL 70
            M  RR++ L +LL   PG+++ G+YR LPLFF +GA LE++MIHW VG+ NFY T+KK+ A DIV  EERL
Sbjct:    1 MRFRRSQTLKHLLDLWPGKKYLGIYRFLPLFFGLGATLEFSMIHWRVGDTNFYNTFKKRQAKDIV--EERL 69          
BLAST of AGAP009045-PA vs. nr
Match: gi|815770592|ref|XP_012235448.1| (PREDICTED: small integral membrane protein 4 [Linepithema humile])

HSP 1 Score: 81.6481 bits (200), Expect = 1.311e-18
Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = 0
Query:    8 RLANLLQRLPGRR-FGVYRILPLFFFMGAALEYTMIHWHVGEVNFYRTYKKKMALDIVLKEERL 70
            +    + +LPG+R FG YR LP+FF  GAALEYTMIHWHVGEVNFY+TYK++   +  L EERL
Sbjct:    6 KFKRFIDKLPGKRIFGNYRFLPIFFVFGAALEYTMIHWHVGEVNFYKTYKRRRVEE--LAEERL 67          
BLAST of AGAP009045-PA vs. nr
Match: gi|1121097602|ref|XP_019539278.1| (PREDICTED: small integral membrane protein 4-like [Aedes albopictus] >gi|1121115247|ref|XP_019547142.1| PREDICTED: small integral membrane protein 4 [Aedes albopictus])

HSP 1 Score: 81.6481 bits (200), Expect = 1.672e-18
Identity = 40/71 (56.34%), Postives = 52/71 (73.24%), Query Frame = 0
Query:    1 MIVRRNERLANLLQRLPGRRF-GVYRILPLFFFMGAALEYTMIHWHVGEVNFYRTYKKKMALDIVLKEERL 70
            M  RR++ L  LL   PG+++ G+YR LPLFF +GA LE++MIHW VG+ NFY T+KK+ A DIV  EERL
Sbjct:    1 MRFRRSQTLKQLLDLWPGKKYLGIYRFLPLFFGLGATLEFSMIHWRVGDTNFYNTFKKRQAKDIV--EERL 69          
BLAST of AGAP009045-PA vs. nr
Match: gi|1000208899|gb|KXJ79223.1| (hypothetical protein RP20_CCG001956 [Aedes albopictus])

HSP 1 Score: 81.6481 bits (200), Expect = 1.709e-18
Identity = 40/71 (56.34%), Postives = 52/71 (73.24%), Query Frame = 0
Query:    1 MIVRRNERLANLLQRLPGRRF-GVYRILPLFFFMGAALEYTMIHWHVGEVNFYRTYKKKMALDIVLKEERL 70
            M  RR++ L  LL   PG+++ G+YR LPLFF +GA LE++MIHW VG+ NFY T+KK+ A DIV  EERL
Sbjct:    1 MRFRRSQTLKQLLDLWPGKKYLGIYRFLPLFFGLGATLEFSMIHWRVGDTNFYNTFKKRQAKDIV--EERL 69          
BLAST of AGAP009045-PA vs. nr
Match: gi|675881176|ref|XP_009026090.1| (hypothetical protein HELRODRAFT_114577 [Helobdella robusta] >gi|555692556|gb|ESN95788.1| hypothetical protein HELRODRAFT_114577 [Helobdella robusta])

HSP 1 Score: 81.2629 bits (199), Expect = 1.915e-18
Identity = 38/63 (60.32%), Postives = 47/63 (74.60%), Query Frame = 0
Query:    6 NERLANLLQRLPGR-RFGVYRILPLFFFMGAALEYTMIHWHVGEVNFYRTYKKKMALDIVLKE 67
            + +LA LL R PG+ RFG+YR LP+FF +GA LE++MI W VGEVNFY  YKKK A  I+L E
Sbjct:    4 SNKLAVLLNRWPGKERFGMYRFLPVFFVLGAVLEFSMIKWQVGEVNFYSIYKKKQAQKIILAE 66          
The following BLAST results are available for this feature:
BLAST of AGAP009045-PA vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of AGAP009045-PA vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
gi|74949008|sp|Q9W3T5.1|SMIM4_DROME1.488e-1955.88RecName: Full=Small integral membrane protein 4[more]
gi|205830728|sp|Q8C1Q6.2|SMIM4_MOUSE1.705e-1151.02RecName: Full=Small integral membrane protein 4; A... [more]
gi|205830727|sp|Q8WVI0.2|SMIM4_HUMAN3.458e-1147.06RecName: Full=Small integral membrane protein 4[more]
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BLAST of AGAP009045-PA vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|826437081|ref|XP_012529535.1|7.053e-2366.15PREDICTED: small integral membrane protein 4 [Mono... [more]
gi|118791522|ref|XP_319797.3|7.698e-2156.16AGAP009045-PA [Anopheles gambiae str. PEST] >gi|11... [more]
gi|568259434|gb|ETN67355.1|1.339e-2057.75hypothetical protein AND_000840 [Anopheles darling... [more]
gi|322788544|gb|EFZ14172.1|5.338e-2059.09hypothetical protein SINV_02837, partial [Solenops... [more]
gi|1173904534|gb|OQR72836.1|8.506e-1951.47small integral membrane protein-like [Tropilaelaps... [more]
gi|157116410|ref|XP_001658463.1|1.103e-1856.34small integral membrane protein 4 [Aedes aegypti] ... [more]
gi|815770592|ref|XP_012235448.1|1.311e-1860.94PREDICTED: small integral membrane protein 4 [Line... [more]
gi|1121097602|ref|XP_019539278.1|1.672e-1856.34PREDICTED: small integral membrane protein 4-like ... [more]
gi|1000208899|gb|KXJ79223.1|1.709e-1856.34hypothetical protein RP20_CCG001956 [Aedes albopic... [more]
gi|675881176|ref|XP_009026090.1|1.915e-1860.32hypothetical protein HELRODRAFT_114577 [Helobdella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold671_size114370supercontigscaffold671_size114370:28126..29154 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold671_size114370-snap-gene-0.30-mRNA-1maker-scaffold671_size114370-snap-gene-0.30-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold671_size114370:28126..29154+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold671_size114370-snap-gene-0.30 ID=maker-scaffold671_size114370-snap-gene-0.30|Name=AGAP009045-PA|organism=Tigriopus kingsejongensis|type=gene|length=1029bp|location=Sequence derived from alignment at scaffold671_size114370:28126..29154+ (Tigriopus kingsejongensis)
GAGAAAAGCTCCAAGGGCCATACCAACATCCGATGGAACACCTAAGTTGA CATGATCATCCGTGTCCAAGAACGAAGAAACGGTCCCCAAATCGCTATGT CATGATCGTCCGCCGTAACGAGCGCTTGGCCAATCTCCTCCAGCGCTTAC CGGGTCGTCGTTTTGGCGTGTACCGGATCTTGCCCCTCTTCTTCTTCATG GGCGCGGCTCTCGAGTACACTATGATCCACTGGCACGTGGGGGAAGTGAA TTTCTGTAAGTTCATGAGGGTATATCAGGCCTAATGGTCGCATTGTTTTC ATGCCCTCCTCCCGTCTTGCAGATCGCACCTACAAGAAAAAGATGGCTTT GGATATCGTGCTCAAAGAGGAGCGTTTAGTCCAGTCGGGTCAAGCCCGTG CCTTGGCCAGCCAAGCTGAATCGGCGGCTTAGAGCTCTTTGCCCCAAAGG CTGTTCTTCCATTCTCTGTATTCAGGCCTCATCATGCCGGCGGGTGTGAG TGTGGGCACCTACGTCAAAGCCTTCTTGGGGGCTTTTGTCTTCGCAGCTA TGGGCTCGCAATGTGTCCACCTGATCTATCGCCCCCTGGATGACTTGCCG CAAGTGGTGGAGGAGTTGAAACAAGCTCGAGCCCAAGAGCGGCAAGCGGC TCAAAGGTCGGCCACTTCGTCGACCAGCCCGAACTCGTCGTAGTTCGTGC CAAAGTGGCAAGTTAACGGTAGGCGTGGCACCGATGATTGAAACTCTTGG GTCGGTCAGGCCCCCCTGAGCCGAGAGTGATGTGAGCAGTGGCAACTTTG GACTCAAATTGGGCCGAAACGAGATAATGGGCTAAACTAAGTTGGAAGAA CGATCATCGATGGGCTGGAACTTTCGAAATGAAGGGCTTTTCGCGCCAAA GAAAACTTGGATCGACTCATTTGGGTCCGAGAGTCCCAGCTCGGGATCGG TGCATACATTATCTCAATGGAGGGAGGATCGACCATCATCAACTAAGTGC AGCAATAGGAAAATTAAAAAAGAACCATT
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Synonyms
The feature 'AGAP009045-PA' has the following synonyms
Synonym
Tk06013
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