maker-scaffold1779_size28306-snap-gene-0.6-mRNA-1, maker-scaffold1779_size28306-snap-gene-0.6-mRNA-1 (mRNA) Tigriopus kingsejongensis

Overview


Name	maker-scaffold1779_size28306-snap-gene-0.6-mRNA-1
Unique Name	maker-scaffold1779_size28306-snap-gene-0.6-mRNA-1
Type	mRNA
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold1779_size28306	supercontig	scaffold1779_size28306:6549..14162 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
ubiquitin carboxyl-terminal hydrolase 28 isoform x3	maker-scaffold1779_size28306-snap-gene-0.6	Tigriopus kingsejongensis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
maker-scaffold1779_size28306-snap-gene-0.6-mRNA-1:exon:368	maker-scaffold1779_size28306-snap-gene-0.6-mRNA-1:exon:368	Tigriopus kingsejongensis	exon
maker-scaffold1779_size28306-snap-gene-0.6-mRNA-1:exon:369	maker-scaffold1779_size28306-snap-gene-0.6-mRNA-1:exon:369	Tigriopus kingsejongensis	exon
maker-scaffold1779_size28306-snap-gene-0.6-mRNA-1:exon:370	maker-scaffold1779_size28306-snap-gene-0.6-mRNA-1:exon:370	Tigriopus kingsejongensis	exon
maker-scaffold1779_size28306-snap-gene-0.6-mRNA-1:five_prime_utr	maker-scaffold1779_size28306-snap-gene-0.6-mRNA-1:five_prime_utr	Tigriopus kingsejongensis	exon
maker-scaffold1779_size28306-snap-gene-0.6-mRNA-1:cds	maker-scaffold1779_size28306-snap-gene-0.6-mRNA-1:cds	Tigriopus kingsejongensis	exon
maker-scaffold1779_size28306-snap-gene-0.6-mRNA-1:cds	maker-scaffold1779_size28306-snap-gene-0.6-mRNA-1:cds-1956499	Tigriopus kingsejongensis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto1956500	auto1956500	Tigriopus kingsejongensis	polypeptide
Tk10602	Tk10602	Tigriopus kingsejongensis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at scaffold1779_size28306:6549..14162+

protein sequence of Tk10602

>Tk10602 ID=Tk10602|Name=Tk10602|organism=Tigriopus kingsejongensis|type=polypeptide|length=343bp
LFTLFSEIGQASNRTLVLASPNGSLRMNERNEAAAMAAPGAAALKGDQSP
HGNSHHEGGERRALWGRASQPTGQKTRYHPDAYHQHRKSLISAASELKDW
HQAYHLFRVSANCYVSGVDYFLRKKFELSLDLFIIAYNVSVRIMESPPKA
SFKGLRTSPLVNALCQSLLEVNSTLIKQFKLGERLNDILTRIQQLVIPAL
MILEARIARQESSNLNSGQSQKPSSMIHTCARLREDWCALLAETSLPPEC
QSFTTQILEAVLDPAVRVGGVVEGSANIIPRSCDHIEQSEDLKLSVRYRE
AVKHMRDFQSNLVELGGSPPQVPSGGTNPSTAAPSPSGTLSSA

mRNA from alignment at scaffold1779_size28306:6549..14162+

Legend: exonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>maker-scaffold1779_size28306-snap-gene-0.6-mRNA-1 ID=maker-scaffold1779_size28306-snap-gene-0.6-mRNA-1|Name=maker-scaffold1779_size28306-snap-gene-0.6-mRNA-1|organism=Tigriopus kingsejongensis|type=mRNA|length=7614bp|location=Sequence derived from alignment at scaffold1779_size28306:6549..14162+ (Tigriopus kingsejongensis)
ATACCCATGATGTCTTGTTCACTTTATTTAGCGAGATCGGCCAAGCTTCC
AATCGCACATTGGTTCTCGCGTCGCCCAACGGCAGCCTGAGGATGAACGA
GCGGAACGAAGCGGCAGCCATGGCGGCTCCAGGGGCAGCAGCGCTCAAAG
GTGACCAATCGCCTCATGGAAATTCGCACCACGAGGGGGGCGAGCGGAGA
GCTCTGTGGGGACGAGCCTCTCAGCCCACGGGCCAGAAGACCAGATATCA
TCCTGACGCATATCACCAGGTGTGGCCTCCTATGATAGCACACCTTGTGA
AGTATATCATTATGGAAAGACAGCACACCTCCCAAATGGATCGAATGTGT
CGGGAATCGGGATAGCGCTGGAGATCGAGGATATAAGCGAGTACAAGCTT
GTTTACATAAAAAATATCTTACGTACACTCTAAACATTAACACAATACGG
CAAGCGTGGGCGGGTGTATTCACCCATTGATTATACATTCTCGATCGGTA
GGCCCGAATCCAACCCCTCCAACTCGGTGAGCATGCATGCACCCGCCCAA
CCAACAGAACCAACCATCGATCTTCTTGAAGGGCATGGAACAACCAAACT
GCACAAACAACAAGGAACACGAACTTCCTCCTACAGCGACTAGAGATGGG
ACAGTTTGGCCTTTGATTGCTGCGTGATGCTCCCTGTCCAGTGGGTATAG
CCATGGAGTACTAGAGTCACCTGGAGGTCGCACAGAACGAATAATGTGTC
CAAAGACGGCATGGTTCAGGAAGATCAAAGCCGTTAATGCAATCAATTGA
CGGGCGAGAGTTGCGGGGGCATTTCACCAAGTTCTGTAGGGTTTCTAAGT
GACTAATTGATGGACTCTTAAACCCTACAGAACTGGTAGAAATGTCATGC
GTACCTCCAGTCCGTCAATTGATTACATTAACGGCTTTCGAGCTTCCTGA
ATAATGCCGTCTTGGGACACATTTTTTGCTCTGTGCGACCTCCAGATGAT
TCTAATACTCCATGGTGTAGCCCATAGAGCTAATAGAACTAAATAGAACC
TCCGTGGTATAGCCTCACTCTAGCCGGTATATACTGTAAGTAGTTCAAGT
GTATAGTTACGAAGCATACCGGCTATGGTCAGGGACATATTGAGAGAAGG
ATCAAGTATTTGGGCTCGGGGAAAAGTAGAGATGACCAAAAGAGGCAAAT
AAGAAGCGACATAAAAGAAAAAAATACATCAATCAGACATTAATGTCTGA
TTGATGTATTTTTATTTTTTATGTATTGTATATGCCCAGGGAACCAAAAT
GAACCAAAAATCTTATCACAAAATGTGTACACTTGCAAAAAAATATTCCA
ATAAACGGCGAGAATCCCGAGCAATCAAAGAAACTATAAATTTGGCCCCA
TAATGAAAAAAAGTCGAATCAGACACATTTGGATGTGACTCGTCTTCACC
GGTAAGTACTTGTCCTATCTAGGGACGTATTCACTGCGCTAGCATTTTTT
CTCACCATGGAATACAATTCATGCATACTGGGCCAATGAAACAGCCCAGT
CAGGAGAAACCAATGCCAGATGCAAGACAAACTCGCCCCTCGACTCAAAT
AAAGGCAAACTTTTTTTGGCACGCGGTGGACCTCCCCCGGTGGTAATTGT
CAACTCGATGGGCGACCCTGTAGCCGGACTACTCTGCAAGAAGGTGTGTG
TATCTAATCGTGCATTTCCAACAGATCAAAATATTTATTTTTTGCCTGAG
AGTCAACACTTAGAGTGTTGACTCTCTAATAGTGTTGCCATTTATAAAAA
AATATATGCACATGACAAGTAGGGAATAAAAACCAAGATGCTGACAACAA
CAGCCAACTATGCCAAACAGAACTCAATAATGACAACACAATAAATGTTT
AAAAGCCTAAACCAATCCTTAAATCTTTGCCCAACTAACACTGCCATAAA
TGTTAACCAAACTCTACCCAGCACAAATAATGTNNNNNNNNNNNNNNNNN
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CGACGAGAGCCTGATCAAGCATCGCAAATCCCTCATTTCGGCCGCCTCGG
AGCTCAAGGATTGGCATCAGGCCTACCACCTGTTCCGAGTCTCGGCCAAC
TGCTACGTCTCGGGAGTGGACTATTTCCTGAGGAAGAAGTTTGAGCTCAG
TCTCGATCTTTTCATCATCGCATACAATGTCAGCGTCAGAATAATGGAAT
CGCCACCTAAGGTGAGGGCATGCATTTATGGTTGAGCATTCTCCAGATTG
GCACCTAGATCGCTGATCCAGATGCAGAGTACCCATCCTACGTATCTACT
GTAGACTTGCAATTACATGGCGAGGTCACATTTTGGTTGAGGCGGACTCG
ATTGTTGCCAACCCTCTTGACCACTGGTGCAAGTATAGAAGCATTATTAA
CCTTTTGGGGACACGCGTTAGGCTGGCTGGGTTTAGAAGTGCCGGTCCGG
TGTCTCATTCCATGCTCTCCATTCGATTTCAGGCCAGTTTTAAAGGCCTG
CGGACGTCGCCCCTCGTGAACGCCTTGTGTCAATCGCTCCTGGAGGTGAA
CAGCACTCTGATCAAACAGTTCAAACTCGGCGAGCGCCTCAACGACATCC
TGACCCGCATCCAGCAGCTCGTCATTCCGGCCCTCATGATTCTGGAGGCG
CGCATCGCACGGCAGGAGAGCTCCAACCTCAACTCGGGACAGTCGCAGAA
GCCGTCCTCCATGATTCACACGTGCGCCCGCCTCCGGGAGGACTGGTGTG
CCTTGCTCGCCGAGACCAGCCTTCCGCCCGAATGCCAGAGCTTCACGACG
CAAATCCTCGAGGCCGTGCTCGACCCTGCCGTTAGGGTGGGGGGCGTGGT
AGAAGGGAGCGCAAACATTATTCCCCGTAGCTGTGATCACATTGAGCAGA
GCGAGGACTTGAAGCTCTCTGTGCGATATCGGGAGGCCGTCAAGCACATG
CGGGACTTTCAGAGCAATCTGGTCGAGTTGGGGGGCTCACCGCCGCAGGT
ACCGAGTGGGGGAACTAATCCGTCGACAGCTGCGCCCTCGCCGAGTGGCA
CTCTGTCCTCGGCG

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