Tk00705, Tk00705 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk00705
Unique NameTk00705
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length552
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000679Zinc finger, GATA-typePRINTSPR00619GATAZNFINGERcoord: 348..365
score: 73.0
coord: 366..383
score: 72.48
IPR000679Zinc finger, GATA-typeSMARTSM00401GATA_3coord: 346..396
e-value: 1.0E-21
score: 88.2
coord: 400..450
e-value: 1.9E-20
score: 83.9
IPR000679Zinc finger, GATA-typePFAMPF00320GATAcoord: 352..385
e-value: 4.9E-16
score: 57.9
coord: 406..439
e-value: 5.9E-14
score: 51.3
IPR000679Zinc finger, GATA-typePROSITEPS00344GATA_ZN_FINGER_1coord: 352..376
IPR000679Zinc finger, GATA-typePROSITEPS50114GATA_ZN_FINGER_2coord: 346..400
score: 28.631
IPR000679Zinc finger, GATA-typePROSITEPS50114GATA_ZN_FINGER_2coord: 400..453
score: 27.088
IPR000679Zinc finger, GATA-typeCDDcd00202ZnF_GATAcoord: 351..395
e-value: 3.95747E-20
score: 81.6502
IPR000679Zinc finger, GATA-typeCDDcd00202ZnF_GATAcoord: 405..456
e-value: 5.24394E-21
score: 84.3466
IPR013088Zinc finger, NHR/GATA-typeGENE3D3.30.50.10coord: 396..456
e-value: 2.1E-30
score: 105.9
IPR013088Zinc finger, NHR/GATA-typeGENE3D3.30.50.10coord: 346..395
e-value: 3.0E-28
score: 99.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 151..170
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 400..457
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 344..397
IPR039355Transcription factor GATAPANTHERPTHR10071TRANSCRIPTION FACTOR GATA GATA BINDING FACTORcoord: 289..483
IPR029522Transcription factor GATA-2PANTHERPTHR10071:SF149ENDOTHELIAL TRANSCRIPTION FACTOR GATA-2coord: 289..483

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold58_size443543-snap-gene-3.21-mRNA-1maker-scaffold58_size443543-snap-gene-3.21-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk00705 ID=Tk00705|Name=Tk00705|organism=Tigriopus kingsejongensis|type=polypeptide|length=552bp
MEDPGAMAPGGSTPSATQVHHRGDSSTTASSDPTGTAHLNNGASPNTLGN
RWYDINTNGTDAQNPMEQQYYNHKSPNGCGGNAPPNNPTHSPLYYQSQVG
DYGRASDARSPVPQAIPPLMSSSSPSAATSSAAVSSFYSPITSMWGSAFG
STTPSGSTSSSSNKSYPVSLPPNSNFAYPPTPPIDMKLEAAAAAAAAASA
SNLNPSHPNADIYHSNLHDGVQGLVLPGGNMLDGTKHAQDHLMSSLGFSS
YPVIPSGKKFQEGTASSLSHVNSSDLSGLGSMMSGLPLDSHAQSGVHSGV
PSSSSSYVYPYISTSHPSSDLTSSFYGSYSAKTLQPSRPRSKIRANAEGR
ECVNCGATSTPLWRRDGNGHYLCNACGLYYKMNGQNRPLIKPKRRLSSAR
REGTICANCKTTNTTLWRRNHNSEPVCNACGLYYKLHNVPRPLTMKKDGI
QTRNRKLSAKSKKKRGTVEDFFKPNQFSAYGSSSYFANPMSQYYSMGQMS
AAAQFSSPMAAAAGMYGSGAAAAAGLAASFQPTVSGPSLFGPSGVSSAAF
AL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000679Znf_GATA
IPR013088Znf_NHR/GATA
IPR039355Transcription_factor_GATA
IPR029522GATA-2
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO:0008270zinc ion binding
GO:0003700DNA-binding transcription factor activity
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0030097hemopoiesis
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
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