Tk03419, Tk03419 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk03419
Unique NameTk03419
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length1551
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 18..38
NoneNo IPR availablePRINTSPR00418TPI2FAMILYcoord: 105..120
score: 57.93
coord: 483..497
score: 61.3
coord: 594..606
score: 37.52
coord: 636..652
score: 55.67
coord: 142..155
score: 56.62
coord: 556..572
score: 66.93
coord: 338..351
score: 64.2
coord: 185..199
score: 59.67
coord: 574..591
score: 51.96
NoneNo IPR availableGENE3D3.30.1490.30coord: 602..645
e-value: 7.5E-122
score: 407.6
NoneNo IPR availableGENE3D3.30.1360.40coord: 921..1025
e-value: 7.0E-203
score: 676.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1391..1423
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1298..1312
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1348..1373
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1281..1551
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1434..1452
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1460..1476
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1516..1533
NoneNo IPR availablePANTHERPTHR10169:SF46DNA TOPOISOMERASE 2-ALPHAcoord: 35..1522
NoneNo IPR availableCDDcd03481TopoIIA_Trans_ScTopoIIAcoord: 291..443
e-value: 6.91327E-70
score: 228.71
IPR001154DNA topoisomerase II, eukaryotic-typePRINTSPR01158TOPISMRASEIIcoord: 1034..1060
score: 48.28
coord: 575..590
score: 81.9
coord: 814..836
score: 73.76
coord: 949..963
score: 66.44
coord: 844..864
score: 51.23
coord: 595..606
score: 80.75
coord: 466..476
score: 76.8
coord: 767..790
score: 76.01
coord: 529..542
score: 54.19
coord: 642..654
score: 82.23
coord: 481..488
score: 94.83
IPR003594Histidine kinase/HSP90-like ATPaseSMARTSM00387HKATPase_4coord: 101..251
e-value: 0.005
score: 26.1
IPR003594Histidine kinase/HSP90-like ATPasePFAMPF02518HATPase_ccoord: 104..250
e-value: 5.8E-14
score: 52.5
IPR003594Histidine kinase/HSP90-like ATPaseCDDcd00075HATPase_ccoord: 106..196
e-value: 1.67665E-8
score: 51.4934
IPR002205DNA topoisomerase, type IIA, subunit A/C-terminalSMARTSM00434topIV4coord: 719..1185
e-value: 8.3E-207
score: 703.0
IPR002205DNA topoisomerase, type IIA, subunit A/C-terminalPFAMPF00521DNA_topoisoIVcoord: 739..1188
e-value: 1.1E-132
score: 442.8
IPR002205DNA topoisomerase, type IIA, subunit A/C-terminalCDDcd00187TOP4ccoord: 737..1190
e-value: 4.95604E-155
score: 476.674
IPR001241DNA topoisomerase, type IIASMARTSM00433topII5coord: 105..696
e-value: 3.1E-292
score: 986.8
IPR001241DNA topoisomerase, type IIAPANTHERPTHR10169DNA TOPOISOMERASE/GYRASEcoord: 35..1522
IPR013758DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-betaGENE3D3.90.199.10coord: 1178..1190
e-value: 7.0E-203
score: 676.4
coord: 1026..1060
e-value: 7.0E-203
score: 676.4
coord: 737..920
e-value: 7.0E-203
score: 676.4
IPR036890Histidine kinase/HSP90-like ATPase superfamilyGENE3D3.30.565.10coord: 61..304
e-value: 7.4E-107
score: 358.3
IPR036890Histidine kinase/HSP90-like ATPase superfamilySUPERFAMILY55874ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinasecoord: 58..290
IPR006171TOPRIM domainPFAMPF01751Toprimcoord: 483..584
e-value: 1.3E-8
score: 34.9
IPR006171TOPRIM domainPROSITEPS50880TOPRIMcoord: 481..598
score: 16.079
IPR013759DNA topoisomerase, type IIA, subunit B, C-terminalGENE3D3.40.50.670coord: 467..601
e-value: 7.5E-122
score: 407.6
coord: 646..736
e-value: 7.5E-122
score: 407.6
IPR013757Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamilyGENE3D1.10.268.10coord: 1061..1177
e-value: 7.0E-203
score: 676.4
IPR013506DNA topoisomerase, type IIA, subunit B, domain 2PFAMPF00204DNA_gyraseBcoord: 292..454
e-value: 6.9E-26
score: 90.7
IPR031660C-terminal associated domain of TOPRIMPFAMPF16898TOPRIM_Ccoord: 599..737
e-value: 3.1E-46
score: 156.7
IPR014721Ribosomal protein S5 domain 2-type fold, subgroupGENE3D3.30.230.10coord: 314..437
e-value: 2.1E-42
score: 145.3
IPR018522DNA topoisomerase, type IIA, conserved sitePROSITEPS00177TOPOISOMERASE_IIcoord: 485..493
IPR034157DNA topoisomerase 2, TOPRIM domainCDDcd03365TOPRIM_TopoIIAcoord: 481..601
e-value: 2.48876E-74
score: 240.28
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 281..442
IPR013760DNA topoisomerase, type IIA-like domain superfamilySUPERFAMILY56719Type II DNA topoisomerasecoord: 457..1203

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold1323_size47899-snap-gene-0.11-mRNA-1maker-scaffold1323_size47899-snap-gene-0.11-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk03419 ID=Tk03419|Name=Tk03419|organism=Tigriopus kingsejongensis|type=polypeptide|length=1551bp
MSDSEDDFDPMFEANGDTQKANGEAKKANGEAKKANGEAKKPKAGGGGAK
RLSVERIYQKKSQLEHILLRPDTYIGSVNPVTEKMWILDEENQRIVNKEI
TYVPGLYKIFDEILVNAADNKQRDKNMDTIKIDINREKNEIRVFNNGRGI
PVEMHKDEKMFVPTLIFGHLLTSSNFNDEEEKVTGGRNGYGAKLCNVFST
KFTVETASRENRKEFKQVWENNMSKAKEAKLKDFSSGSDYTRITFTPDLP
KFNMESLDADTVALLSRRAYDIAASSKGVKVFLNGKRIGVKNFKDYVDFF
LKGHEDETGSPVKAIYEAAGERWEVAVAVSDNGFQQMSFVNSIATTKGGR
HVDYVSKMIESNIAEVLKKKNKGGVTIKPHQIRNHLWLFINCLIVNPTFD
SQTKENMTLLMTKFGSKCSFTPKFFGQLQKSGVVESVLAWSKFKADQEMK
NKHSSKKTNKLKGILKLEDANDAGTKNSIDCTLILTEGDSAKTLAVAGLG
VVGRDKFGVYPLRGKLLNVREATHKQIIENKEINEMVKIIGLTYKKKYST
VDDLKSLRYGKLMIMTDQDQDGSHIKGLLINFIHHNWPSLLRLPFLEEFI
TPIVKATKGSLSTSFFSLPELHEWKSHTDNWHTYKIKYYKGLGTSTSKEA
KEYFSDMKRHQILFKHESDQDDHAINMAFSKKAIDQRKEWLTTWMEECKR
RKELGLSEIYLYEKDTKTVSYSDFINKELVLFSNLDNERSIPSVVDGFKP
GQRKVMFTCLKRNDKREVKVAQLAGSVGEMSAYHHGEASLMGTIINLAQN
FVGSNNINLLLPIGQFGTRLAGGKDHASPRYIFTQMSPLTRLIFNSNDDA
VLNYLTDDNQKIEPEWYMPIIPMVLVNGADGIGTGWMTKIPNYNPREIVR
NLLNMIDGAEPEDMKPWFKSFKGGIESIENQRYVVNGEIASISENKIEVT
ELPVRSWTQSYKEQVMEPMLNGSEKIPAIIQDYKEYHTDVTVKFVVQMSA
DKLRQAELDKGLHQFFKLQTTISTSSMVLFDAKGCLRKYENVLEIMREFF
HLRLNFYEKRKNYLEGMLEAESLKLSNQARFILEKCDGSLVVENKKRKAL
IEELQRKGFDSDPVKKWKNAQKMEEDSDSDSEGGLEKDLDYDYLLGMAMW
SLTQERKDELLRRKDEKHQELRMLRGTSKEDLWRTDLKEFMEKLDEVEAK
EIEDERVILSKESQKGAKGKKKLKIEALPSPVGIRVVPLIAEELKNKAAK
AAAAKSRKGEKLDKKNLKEVEAVKDEFDFMCDDKDMNRSLSEKLGVSVND
KGAKKRGSDSSTPKKRPQSSPKTKGKKPWEDSDATSESDNSVEFDDFDDS
GSDNKKSKSEPKSGSEVSDYEPEAKIAKNMAQNDIFNSSDDSDAPKVKRA
TAPAHKVFDLDDSDEDFDKVLKPSAPAAKRPSSDQKSEVVDSDDSDSPIK
KKKRTISKAKKKVLDSDDDAPIKKPKAKKPKASPKVKKPPAAATKKSKKT
SQGSDYDDSDEDDMFKDSDLSVLSVEKKVRGGVRRAAAQQKFTYSSDESD
F
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001154TopoII_euk
IPR003594HATPase_C
IPR002205Topo_IIA_A/C
IPR001241Topo_IIA
IPR013758Topo_IIA_A/C_ab
IPR036890HATPase_C_sf
IPR006171TOPRIM_domain
IPR013759Topo_IIA_B_C
IPR013757Topo_IIA_A_a_sf
IPR013506Topo_IIA_bsu_dom2
IPR031660TOPRIM_C
IPR014721Ribosomal_S5_D2-typ_fold_subgr
IPR018522TopoIIA_CS
IPR034157TOPRIM_TopoII
IPR020568Ribosomal_S5_D2-typ_fold
IPR013760Topo_IIA-like_dom_sf
Vocabulary: Biological Process
TermDefinition
GO:0006265DNA topological change
GO:0006259DNA metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0005524ATP binding
GO:0003918DNA topoisomerase type II (ATP-hydrolyzing) activity
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