Tk05304, Tk05304 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk05304
Unique NameTk05304
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length2147
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPRINTSPR00261LDLRECEPTORcoord: 1210..1231
score: 47.56
coord: 1405..1426
score: 52.77
coord: 1129..1150
score: 59.42
coord: 1168..1189
score: 53.77
coord: 1090..1111
score: 61.2
coord: 1249..1270
score: 47.78
IPR002172Low-density lipoprotein (LDL) receptor class A repeatSMARTSM00192LDLa_2coord: 1350..1390
e-value: 1.6E-10
score: 51.0
coord: 1198..1236
e-value: 2.2E-11
score: 53.9
coord: 1292..1329
e-value: 6.9E-12
score: 55.5
coord: 1238..1275
e-value: 1.0E-12
score: 58.3
coord: 1439..1476
e-value: 3.0E-9
score: 46.7
coord: 1393..1431
e-value: 1.2E-9
score: 48.0
coord: 1079..1116
e-value: 7.9E-15
score: 65.3
coord: 1157..1194
e-value: 9.5E-15
score: 65.0
coord: 1118..1155
e-value: 8.4E-15
score: 65.2
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPFAMPF00057Ldl_recept_acoord: 1118..1153
e-value: 3.8E-10
score: 39.7
coord: 1079..1114
e-value: 7.9E-12
score: 45.1
coord: 1351..1383
e-value: 4.6E-7
score: 29.8
coord: 1157..1192
e-value: 1.2E-12
score: 47.7
coord: 1393..1429
e-value: 1.5E-7
score: 31.4
coord: 1292..1327
e-value: 1.8E-9
score: 37.5
coord: 1439..1474
e-value: 1.7E-8
score: 34.4
coord: 1238..1273
e-value: 1.8E-9
score: 37.5
coord: 1198..1234
e-value: 4.6E-9
score: 36.3
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPROSITEPS50068LDLRA_2coord: 1118..1154
score: 14.338
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPROSITEPS50068LDLRA_2coord: 1238..1274
score: 13.463
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPROSITEPS50068LDLRA_2coord: 1157..1193
score: 14.262
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPROSITEPS50068LDLRA_2coord: 1079..1115
score: 14.2
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPROSITEPS50068LDLRA_2coord: 1393..1430
score: 13.538
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPROSITEPS50068LDLRA_2coord: 1439..1475
score: 12.613
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPROSITEPS50068LDLRA_2coord: 1198..1235
score: 14.325
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPROSITEPS50068LDLRA_2coord: 1292..1328
score: 13.038
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPROSITEPS50068LDLRA_2coord: 1350..1389
score: 11.713
IPR002172Low-density lipoprotein (LDL) receptor class A repeatCDDcd00112LDLacoord: 1199..1234
e-value: 1.1056E-12
score: 61.8389
IPR002172Low-density lipoprotein (LDL) receptor class A repeatCDDcd00112LDLacoord: 1293..1327
e-value: 1.09792E-11
score: 58.7574
IPR002172Low-density lipoprotein (LDL) receptor class A repeatCDDcd00112LDLacoord: 1239..1273
e-value: 1.83722E-12
score: 61.0685
IPR002172Low-density lipoprotein (LDL) receptor class A repeatCDDcd00112LDLacoord: 1158..1192
e-value: 9.62251E-15
score: 67.6169
IPR002172Low-density lipoprotein (LDL) receptor class A repeatCDDcd00112LDLacoord: 1394..1429
e-value: 4.89725E-11
score: 56.8314
IPR002172Low-density lipoprotein (LDL) receptor class A repeatCDDcd00112LDLacoord: 1440..1474
e-value: 1.14145E-9
score: 52.9794
IPR002172Low-density lipoprotein (LDL) receptor class A repeatCDDcd00112LDLacoord: 1351..1384
e-value: 1.33142E-8
score: 49.8978
IPR003961Fibronectin type IIISMARTSM00060FN3_2coord: 1577..1654
e-value: 4.6E-5
score: 32.8
coord: 1670..1748
e-value: 2.9E-5
score: 33.5
coord: 1863..1950
e-value: 8.5
score: 12.1
coord: 1962..2049
e-value: 43.0
score: 6.0
coord: 1764..1848
e-value: 9.2E-4
score: 28.5
IPR003961Fibronectin type IIIPFAMPF00041fn3coord: 1672..1752
e-value: 2.4E-6
score: 27.7
coord: 1579..1657
e-value: 3.7E-8
score: 33.5
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 1576..1668
score: 17.862
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 1767..1861
score: 14.257
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 1672..1765
score: 13.578
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 1480..1575
score: 6.557
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 1865..1961
score: 14.115
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 1963..2062
score: 9.681
IPR003961Fibronectin type IIICDDcd00063FN3coord: 1671..1758
e-value: 6.50451E-8
score: 50.1875
IPR003961Fibronectin type IIICDDcd00063FN3coord: 1865..1958
e-value: 3.10901E-4
score: 39.4019
IPR003961Fibronectin type IIICDDcd00063FN3coord: 1574..1663
e-value: 9.12581E-13
score: 63.6695
IPR003961Fibronectin type IIICDDcd00063FN3coord: 1769..1858
e-value: 6.31688E-8
score: 50.1875
IPR000742EGF-like domainSMARTSM00181egf_5coord: 1238..1274
e-value: 140.0
score: 3.0
coord: 1021..1060
e-value: 0.0052
score: 26.0
coord: 1157..1193
e-value: 170.0
score: 1.8
IPR000033LDLR class B repeatSMARTSM00135LY_2coord: 909..952
e-value: 6.9E-10
score: 48.8
coord: 864..908
e-value: 3.8E-11
score: 53.0
coord: 954..994
e-value: 0.19
score: 20.8
coord: 817..859
e-value: 4.7E-5
score: 32.8
coord: 774..816
e-value: 45.0
score: 4.6
IPR000033LDLR class B repeatPFAMPF00058Ldl_recept_bcoord: 884..927
e-value: 7.2E-9
score: 35.9
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 837..883
score: 9.158
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 884..929
score: 12.894
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 794..836
score: 8.485
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 930..973
score: 11.78
IPR006581VPS10SMARTSM00602vps10coord: 108..750
e-value: 2.0E-139
score: 479.2
IPR031778Sortilin, N-terminalPFAMPF15902Sortilin-Vps10coord: 118..574
e-value: 2.8E-92
score: 309.8
NoneNo IPR availableGENE3D4.10.400.10coord: 1345..1390
e-value: 8.6E-10
score: 40.1
NoneNo IPR availableGENE3D4.10.400.10coord: 1075..1116
e-value: 5.4E-14
score: 53.5
coord: 1289..1335
e-value: 3.6E-12
score: 47.6
coord: 1236..1281
e-value: 1.2E-12
score: 49.2
coord: 1157..1195
e-value: 3.1E-15
score: 57.4
coord: 1117..1156
e-value: 3.3E-14
score: 54.1
NoneNo IPR availableGENE3D2.40.128.620coord: 1438..1565
e-value: 4.6E-10
score: 42.0
NoneNo IPR availableGENE3D2.10.70.90coord: 671..752
e-value: 3.2E-23
score: 83.9
NoneNo IPR availableGENE3D2.10.70.80coord: 615..670
e-value: 4.0E-9
score: 38.3
NoneNo IPR availableGENE3D4.10.400.10coord: 1196..1234
e-value: 1.0E-12
score: 50.0
coord: 1391..1429
e-value: 1.2E-9
score: 40.2
NoneNo IPR availablePANTHERPTHR12106:SF20SORTILIN-RELATED RECEPTORcoord: 1388..1430
NoneNo IPR availablePANTHERPTHR12106:SF20SORTILIN-RELATED RECEPTORcoord: 1238..1280
NoneNo IPR availablePANTHERPTHR12106SORTILIN RELATEDcoord: 1155..1198
NoneNo IPR availablePANTHERPTHR12106SORTILIN RELATEDcoord: 1436..1475
coord: 1238..1280
coord: 1340..1384
NoneNo IPR availablePANTHERPTHR12106:SF20SORTILIN-RELATED RECEPTORcoord: 1436..1475
coord: 1278..1340
coord: 80..1020
NoneNo IPR availablePANTHERPTHR12106:SF20SORTILIN-RELATED RECEPTORcoord: 1155..1198
NoneNo IPR availablePANTHERPTHR12106SORTILIN RELATEDcoord: 1388..1430
NoneNo IPR availablePANTHERPTHR12106SORTILIN RELATEDcoord: 80..1020
NoneNo IPR availablePANTHERPTHR12106:SF20SORTILIN-RELATED RECEPTORcoord: 1340..1384
NoneNo IPR availablePANTHERPTHR12106SORTILIN RELATEDcoord: 1278..1340
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..20
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..2072
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 2096..2147
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 2073..2095
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 21..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..28
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..28
score: 0.823
NoneNo IPR availableSUPERFAMILY63825YWTD domaincoord: 753..1011
NoneNo IPR availableSUPERFAMILY110296Oligoxyloglucan reducing end-specific cellobiohydrolasecoord: 108..261
coord: 422..613
NoneNo IPR availableTMHMMTMhelixcoord: 2073..2095
IPR031777Sortilin, C-terminalPFAMPF15901Sortilin_Ccoord: 577..745
e-value: 2.9E-37
score: 128.5
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 1960..2066
e-value: 6.4E-6
score: 28.2
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 1864..1959
e-value: 1.1E-5
score: 27.5
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 1671..1760
e-value: 6.8E-13
score: 50.7
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 1566..1665
e-value: 2.1E-14
score: 55.6
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 1761..1863
e-value: 3.2E-11
score: 45.3
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 80..243
e-value: 2.9E-5
score: 25.1
IPR011042Six-bladed beta-propeller, TolB-likeGENE3D2.120.10.30coord: 753..1061
e-value: 3.5E-89
score: 300.8
IPR023415Low-density lipoprotein (LDL) receptor class A, conserved sitePROSITEPS01209LDLRA_1coord: 1452..1474
IPR023415Low-density lipoprotein (LDL) receptor class A, conserved sitePROSITEPS01209LDLRA_1coord: 1251..1273
IPR023415Low-density lipoprotein (LDL) receptor class A, conserved sitePROSITEPS01209LDLRA_1coord: 1170..1192
IPR023415Low-density lipoprotein (LDL) receptor class A, conserved sitePROSITEPS01209LDLRA_1coord: 1212..1234
IPR023415Low-density lipoprotein (LDL) receptor class A, conserved sitePROSITEPS01209LDLRA_1coord: 1407..1429
IPR036055LDL receptor-like superfamilySUPERFAMILY57424LDL receptor-like modulecoord: 1439..1476
IPR036055LDL receptor-like superfamilySUPERFAMILY57424LDL receptor-like modulecoord: 1289..1327
IPR036055LDL receptor-like superfamilySUPERFAMILY57424LDL receptor-like modulecoord: 1238..1275
IPR036055LDL receptor-like superfamilySUPERFAMILY57424LDL receptor-like modulecoord: 1157..1194
IPR036055LDL receptor-like superfamilySUPERFAMILY57424LDL receptor-like modulecoord: 1198..1234
IPR036055LDL receptor-like superfamilySUPERFAMILY57424LDL receptor-like modulecoord: 1351..1388
IPR036055LDL receptor-like superfamilySUPERFAMILY57424LDL receptor-like modulecoord: 1393..1429
IPR036055LDL receptor-like superfamilySUPERFAMILY57424LDL receptor-like modulecoord: 1118..1153
IPR036055LDL receptor-like superfamilySUPERFAMILY57424LDL receptor-like modulecoord: 1077..1114
IPR036116Fibronectin type III superfamilySUPERFAMILY49265Fibronectin type IIIcoord: 1813..1959
IPR036116Fibronectin type III superfamilySUPERFAMILY49265Fibronectin type IIIcoord: 1490..1663
IPR036116Fibronectin type III superfamilySUPERFAMILY49265Fibronectin type IIIcoord: 1675..1859

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold337_size202799-snap-gene-0.21-mRNA-1maker-scaffold337_size202799-snap-gene-0.21-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk05304 ID=Tk05304|Name=Tk05304|organism=Tigriopus kingsejongensis|type=polypeptide|length=2147bp
MVQLTPPGRGALVAGLLLLCGLSNLVSGLRPLRPEPHPNVNHVRLDPSEA
RLVKRDAPAASGNATTDGPDLVRVNDLASAFHLNDSHLHLMVHWAGQGSS
IMFCLARDQEMKAGATSKVFYSTDYGFTFSDISEEFKLEDGQLATLARFY
YHPMSNCHYVFTDTVHRYIFTSTDCGRTFVGHKLEIIPELIEFDKNQDKV
FLIHDLIDDEKKLYVTKNFGQTFSRVQDYVKGFFFEYGTDHTILYVQRLE
PPGNRTTILSSANYFERQIDTRVIYVSAQDFELKEHFMFVTRPSKANASH
LDLFVSSQGERFVPVKLGNDLPTLDFHIIDVTEDGEVMICVNHGPTLSNL
YTSVRITHHEVEFTLSLERIMFYNPDVTWHDSWLADTAGDQQFADVYKIE
GLRGIYIASQISEKSMNLDQIQPDDLITLITFDQGAMWSKVIGPETDEEG
YKFPNCDHSCSLHIAQQLSKRFPSTRSIPVLSSKSAVGIVMATGNMGMNL
SHRSNVFLSADAGLSWHQVLKGSYYFNIGDHGGIIVAVKYYKTEGWTNEL
LYSTNEGLDWKSIVFYKEPLRIFGLLTEPKENTTIFTMFGTAKNAKGPGI
EWIIITVDLRTVFDHNCTEDDYKRWSPADNSLGKHRNCILGRKEVYERRM
INSNCYNGLDYERRVTMENCGCDRSDFMCDFGFIKDNEWTTDCVKDTRFQ
HDSYGVPATCKSGQFYNRTRGYVKIRGDTCLDGKASRYEPLRVPCPVKEE
KEFLLMSERSNIVRVNLRNTSEIDRLPLVNASNVVSLEFDMEDNCVIYGD
IELDKIFIQCLNGSEPRALVENNLESVEGMAYDWITKTLYFADGPRHSIE
LIRVDLQNQGRMRKTIMQGKVSRPRGLAIHPMEGYLFFTDWNKMHPQIGR
ANLDGSDRKVLFTRPLVQWPNGLSIDYIANRVYWVDADKDFIASCNLEGT
GFKKVLSGSVLVHPFAISIFKELMYWNDWNRKALYYADKNTGNGTTLIMK
NEVGVMDMKIFSSIHRSGTNACSQSPCSHLCVGMPAPKNYQCLCPNGMKA
EQTGSKMLCKCPDGSLPSKDGTCPQTNGKCGTSQFTCDSKVCIPLLWKCD
GDDDCGDGSDEAQCSREKCREFQFQCSNGKCIPDYWKCDFDDDCGDGSDE
RDCGKAQCTKEQFRCNNGECISSKWRCDHERDCQDGSDEVNCTTIAPNCK
ADEFRCPDAGQCLPNSWKCDGDNDCPGGADEENCDGQRCKDFQFTCGNGH
CIFQTWVCDNQTDCSDGTDEVDCENQTTLSPELPLPVFPQGECNEWMFKC
HNDQCIPFWWKCDGTPDCTDASDELECNIPNKGTSDSTTLEVPTTPVSNG
CSANNKFECGDGQCIWQAWVCDNDKDCLGGEDEDPTICRGRPSCGHDQFR
CELSGECLDSSRICDGRQDCSDGSDENGCRDDLSPVHPQCGENEFMCDGG
NCVASSLICDGHRDCEDLADEMFCDHGVIKVRGLEADVNQISNATIKIHW
YMSDALHKNDWEFSPGYSVQGINHWIFMDWAKISDYSFTFKNLYPATTYN
ITVNIREGAHLYNFTNFALATTAPYRPTPPVITSVSQEGSKVKVTWAPPR
NPNGELKFYVIEIMPTGRTYEREPGETTAILDALLTPKTKYQFTVTAINT
AYSGEPSESFDFVYGANFVDEKVEGLQIVAVDESSVSIRWDANSGVENFK
VNYKTNNPLATYDDVLVAANMTEKVTLSSLSPNESYALSVSALRHGDSGE
PSRINFRTPGTTLPRPIITNAKVTVVSATSIKLTWSLPEDEKRKEEWEFG
VYFGLNYADIMGTSNSITTRETSATISNLRACESYSFIVAVVGPHGYGPA
SQERTLSTKYAAGAPPKNLKGYVEDANDQLNLHVHWDASCDQMDVSIGYH
LSIKDLTSNHTTRQQFAKVSNTSFHHIVQGVHYSTRYEIQVQTNVPDSVP
TSPVWVHTPPIPAPVSVTHHYTEGDSNKQMIYWRKANNLPTYIKEDFTYR
MFLSREANLSDPIVYDVERPPYEIPVKSLTPGSIYFVGVALVDNDGYASK
LSTPVPFEVPVPEEDMVIPKSSAIGIVLPLLIAIVVLGAGLGYYVHRNRR
ITRNFQAFASRYSPASGAAILNQASLDDDDDSPIIRGFSDDEPLVVT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002172LDrepeatLR_classA_rpt
IPR003961FN3_dom
IPR000742EGF-like_dom
IPR000033LDLR_classB_rpt
IPR006581VPS10
IPR031778Sortilin_N
IPR031777Sortilin_C
IPR013783Ig-like_fold
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR0110426-blade_b-propeller_TolB-like
IPR023415LDLR_class-A_CS
IPR036055LDL_receptor-like_sf
IPR036116FN3_sf
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
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