Tk05453, Tk05453 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk05453
Unique NameTk05453
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length778
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.1800.10coord: 671..778
e-value: 6.6E-46
score: 156.6
NoneNo IPR availableGENE3D1.10.10.1450coord: 8..47
e-value: 1.3E-8
score: 36.7
NoneNo IPR availableGENE3D3.90.1070.20coord: 138..220
e-value: 5.6E-39
score: 133.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..67
NoneNo IPR availablePANTHERPTHR20856:SF7DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2coord: 62..777
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 63..778
IPR007645RNA polymerase Rpb2, domain 3PFAMPF04565RNA_pol_Rpb2_3coord: 72..135
e-value: 3.1E-24
score: 84.8
IPR007647RNA polymerase Rpb2, domain 5PFAMPF04567RNA_pol_Rpb2_5coord: 256..305
e-value: 1.4E-17
score: 63.9
IPR007641RNA polymerase Rpb2, domain 7PFAMPF04560RNA_pol_Rpb2_7coord: 686..777
e-value: 1.0E-33
score: 115.4
IPR007120DNA-directed RNA polymerase, subunit 2, hybrid-binding domainPFAMPF00562RNA_pol_Rpb2_6coord: 312..684
e-value: 1.3E-127
score: 426.1
IPR014724RNA polymerase Rpb2, OB-foldGENE3D2.40.50.150coord: 413..532
e-value: 2.1E-155
score: 519.1
coord: 343..358
e-value: 2.1E-155
score: 519.1
IPR007646RNA polymerase Rpb2, domain 4PFAMPF04566RNA_pol_Rpb2_4coord: 170..232
e-value: 1.4E-24
score: 86.1
IPR037033DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamilyGENE3D2.40.270.10coord: 359..412
e-value: 2.1E-155
score: 519.1
coord: 313..342
e-value: 2.1E-155
score: 519.1
coord: 533..670
e-value: 2.1E-155
score: 519.1
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 62..777
IPR015712DNA-directed RNA polymerase, subunit 2CDDcd00653RNA_pol_B_RPB2coord: 71..776
e-value: 0.0
score: 879.594
IPR007121RNA polymerase, beta subunit, conserved sitePROSITEPS01166RNA_POL_BETAcoord: 536..548

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold224_size251237-snap-gene-1.55-mRNA-1maker-scaffold224_size251237-snap-gene-1.55-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk05453 ID=Tk05453|Name=Tk05453|organism=Tigriopus kingsejongensis|type=polypeptide|length=778bp
MSEQYGTIKTYVKAGKSATEALRLLREAYGDKALSKTQVFEWHRQFRNGR
EDSQSRTGKTSRRPSRTEENIVLNRLTYASTLSHLRRINSPIGRDGKLAK
PRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYVSVGNTPSPILEFLEE
WSMENLEEIAPSSIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDII
NAEVSMIRDIRDREIRIYTDAGRICRPLLIVEDCRLLMKKHHIEQLKDRE
FNNYQWQDLVASGVVEYIDTMEEETTMIATSPESLQPAEDGTFYCQTWTH
CEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMD
TLAHVLYYPQKPLVTTRSMDYLRFSELPAGINSIVAIATYTGYNQEDSVI
LNSSAVDRGFFRSVFMRSYKDSELKRNDQDECFEKPSRDTCQGMRNAIYD
KLDDDGIIAPGLRVSGDDVVIGKTIKIQENDDELEGKTQRFSKRDASTFL
RNSETGIVDQVMITLNQDANKFVKIRVRSPRIPQIGDKFASRHGQKGTCG
IQYRQEDMPFTCEGISPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEV
GDATPFNDAVDVQKISKLLSEYNYQPRGNEVMYSGHTGRKINAQVFLGPT
YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIS
HGAAQFLRERLFEVSDPYRVHVCNLCGLIAIANLRNNTFECKGCKNKTQI
SQVKLPYAAKLLFQELMAMNIAPRMMVD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007645RNA_pol_Rpb2_3
IPR007647RNA_pol_Rpb2_5
IPR007641RNA_pol_Rpb2_7
IPR007120DNA-dir_RNAP_su2_dom
IPR014724RNA_pol_RPB2_OB-fold
IPR007646RNA_pol_Rpb2_4
IPR037033DNA-dir_RNAP_su2_hyb_sf
IPR015712DNA-dir_RNA_pol_su2
IPR007121RNA_pol_bsu_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003899DNA-directed 5'-3' RNA polymerase activity
GO:0003677DNA binding
GO:0032549ribonucleoside binding
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
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