Tk06172, Tk06172 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk06172
Unique NameTk06172
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length1671
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPRINTSPR00261LDLRECEPTORcoord: 1349..1370
score: 51.33
coord: 1234..1255
score: 45.68
coord: 1312..1333
score: 49.67
coord: 1274..1295
score: 55.32
IPR002172Low-density lipoprotein (LDL) receptor class A repeatSMARTSM00192LDLa_2coord: 1262..1300
e-value: 9.8E-11
score: 51.7
coord: 1301..1336
e-value: 5.6E-6
score: 35.9
coord: 1337..1375
e-value: 3.1E-8
score: 43.4
coord: 1224..1260
e-value: 1.8E-10
score: 50.8
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPFAMPF00057Ldl_recept_acoord: 1337..1373
e-value: 9.5E-9
score: 35.2
coord: 1263..1298
e-value: 1.8E-9
score: 37.5
coord: 1224..1258
e-value: 9.4E-8
score: 32.1
coord: 1301..1336
e-value: 4.0E-8
score: 33.2
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPROSITEPS50068LDLRA_2coord: 1224..1259
score: 13.113
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPROSITEPS50068LDLRA_2coord: 1337..1374
score: 12.463
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPROSITEPS50068LDLRA_2coord: 1262..1299
score: 13.613
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPROSITEPS50068LDLRA_2coord: 1301..1337
score: 12.637
IPR002172Low-density lipoprotein (LDL) receptor class A repeatCDDcd00112LDLacoord: 1302..1336
e-value: 1.58415E-9
score: 52.209
IPR002172Low-density lipoprotein (LDL) receptor class A repeatCDDcd00112LDLacoord: 1226..1258
e-value: 1.23675E-12
score: 61.0685
IPR002172Low-density lipoprotein (LDL) receptor class A repeatCDDcd00112LDLacoord: 1338..1373
e-value: 4.6182E-10
score: 53.7498
IPR002172Low-density lipoprotein (LDL) receptor class A repeatCDDcd00112LDLacoord: 1263..1298
e-value: 4.66891E-12
score: 59.5278
IPR001254Serine proteases, trypsin domainSMARTSM00020trypsin_2coord: 1470..1667
e-value: 5.8E-5
score: -11.8
IPR001254Serine proteases, trypsin domainPFAMPF00089Trypsincoord: 1476..1658
e-value: 7.6E-19
score: 68.3
IPR001254Serine proteases, trypsin domainPROSITEPS50240TRYPSIN_DOMcoord: 1472..1665
score: 14.3
NoneNo IPR availableGENE3D4.10.400.10coord: 1221..1255
e-value: 2.6E-10
score: 41.8
NoneNo IPR availableGENE3D4.10.400.10coord: 1261..1300
e-value: 5.9E-12
score: 47.3
NoneNo IPR availableGENE3D4.10.400.10coord: 1301..1341
e-value: 7.5E-10
score: 40.8
NoneNo IPR availableGENE3D2.10.25.10coord: 390..437
e-value: 4.1E-6
score: 28.8
NoneNo IPR availableGENE3D2.40.10.10coord: 1481..1482
e-value: 2.5E-27
score: 97.9
coord: 1591..1661
e-value: 2.5E-27
score: 97.9
NoneNo IPR availableGENE3D2.40.10.10coord: 1483..1590
e-value: 2.5E-27
score: 97.9
NoneNo IPR availableGENE3D4.10.400.10coord: 1342..1376
e-value: 5.0E-10
score: 40.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1158..1187
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1119..1194
NoneNo IPR availablePANTHERPTHR44934FAMILY NOT NAMEDcoord: 1342..1654
coord: 1266..1299
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..204
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 205..229
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 230..1671
NoneNo IPR availableTMHMMTMhelixcoord: 207..229
IPR000082SEA domainPFAMPF01390SEAcoord: 287..348
e-value: 9.7E-6
score: 25.7
IPR000082SEA domainPROSITEPS50024SEAcoord: 282..393
score: 10.529
IPR023415Low-density lipoprotein (LDL) receptor class A, conserved sitePROSITEPS01209LDLRA_1coord: 1351..1373
IPR023415Low-density lipoprotein (LDL) receptor class A, conserved sitePROSITEPS01209LDLRA_1coord: 1276..1298
IPR001190SRCR domainPROSITEPS50287SRCR_2coord: 1355..1413
score: 7.351
IPR036055LDL receptor-like superfamilySUPERFAMILY57424LDL receptor-like modulecoord: 1301..1338
IPR036055LDL receptor-like superfamilySUPERFAMILY57424LDL receptor-like modulecoord: 1337..1373
IPR036055LDL receptor-like superfamilySUPERFAMILY57424LDL receptor-like modulecoord: 1261..1298
IPR036055LDL receptor-like superfamilySUPERFAMILY57424LDL receptor-like modulecoord: 1223..1258
IPR009003Peptidase S1, PA clanSUPERFAMILY50494Trypsin-like serine proteasescoord: 1476..1660
IPR036772SRCR-like domain superfamilySUPERFAMILY56487SRCR-likecoord: 1387..1421

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold40_size501252-snap-gene-4.18-mRNA-1maker-scaffold40_size501252-snap-gene-4.18-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk06172 ID=Tk06172|Name=Tk06172|organism=Tigriopus kingsejongensis|type=polypeptide|length=1671bp
MLSSLNSKVHLPTVLLDSQGPGRTDGGSNGGQGHKSRLCYATVEDTASKN
GPLHFKLNKLPKGDEYFLVSQSYDFDSIQRPETNTTFIMDKEDAISANSL
PDSSSTASTEQPVPKGGQDNHAFENSMEKGTPSISPSPPPHEAVNLELVE
LTPPLKSAMDGKKKAGLPDDHFIAVNEHKKGLRGEKLYVTKDQRGSGGKS
CRKKLCIALILAVLITAIVVAILVGVGVIDPHPKSADSNQENLDTPQNGP
RVGGVIDPDAGGNPDDIFGKDVEVPSSKPDSSPNALEGKLRLTSLSWDED
LKDKDSKAYQELVAKLESELKQTLTGLDSDLNINIVGLEEGSVIIRYRIG
SSNGGSTEINPEELTAKLMEQQSVFSSVYKLDPRSIQLDYLENECQTLDC
SDACYYNYGANQFECSCPEGKVLGTDKRTCQGNLLSAEDTILFGSTFEAD
VTSTTTTTSTTPSPVLETTFLEAEESIPEGTEEPLPEETDYPHPEETEDY
LPEVTEREPSPEGTEEPLPEAGGEPLPEGTEEPLPEAGGEPLPEGTEEPI
RESENYDTESYQDVSGEQAWPEILVSTDSSTTVEPEVPATERRNILSSME
HDEDYLLEVDSFPEVEVIAPEPTTVSTAKEVEVSTMGSAEEVEVMPTLAP
TSIDIMVPVFGDGKNITVEIEKAVEHAITKVVADMTPFTEESGHGTDYTT
TKLPEVVAMDISESLEGRHASVHVTAAPIEEATTVVSLLPVDTTEFHDAR
MLELERTLAAVVSNVTSFMETTTGDSSLEYDTFDIQAETTTNTLKEVGTK
MTDLGLSTEMTHADMTTFQTLMHGSTSDEATTTDGAILFEEVTSPQQVTT
TASVEAEAPSTTVAGAPLGDVPEATTVIPLEEKPAVEAPASTEVFVEVPA
TSVPFVEGPTTMTPNVGVPSTVSPAMEDAATTVVPNLPEFTDQVSVEITT
DVPFTTAPLTLTGVASDVLPIQSEEDNAVETETITATTTTTQTPSVSRND
AAVPRNLEFNETSEDRISEEQKKQHKITDDMEESSVLPEVEQLKETSELP
EVERVEDSSEMPVVEELEKTSELPKMSAEGTSELPKVQGEESSELTEVEE
LEKTTELLKLSVEGTTELPKVQVEESSGLPEVEELEKTTELPKLSVEGTT
ELPKVQVEESSELSEVEELEKTSKLPEVEELEKTSELPKVSVEGTSELPE
VEAITEAAATTEADLAKGLQIVDTCSDQFKCSDESCIPRDQVCNRIRDCS
DGSDETDCGVTICMDDEFKCSTSGRCIPWSMQCDGRSDCQDGEDELKCQQ
ECSNGSFLCPEGFCISKSLTCDGTTDCANGEDEAECQCGEDEFSCSMGGG
CIMRSKVCDGTGDCPDQSDEWSCIQTDSNQVLQVKDLNQTWSTVCSFGWD
GILSTGACLQMGFEDVESTETMEDSIGQPLFVNSTFVFDGPLQGALFEEE
EKNCSNCAKWKISATALTSLMEVGQAPNDAPWPSVAYIFNVNSKSSCTGS
ILSPKWVLTSYRCIAEKELDPLHWVAFGGPAGPNEESTDGLSTGTQIKMV
EQIIKHPGSRYSQGFQSNDLALIQLVEPFNFTKSDKLVQGICLSNSPIEG
GQMCVTAGWSDDEEGGSTFHQYVDYMPMPNYDVDKCNSTDHYNGLLSSDT
FCTGSKPDASGCRCKEREVHD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002172LDrepeatLR_classA_rpt
IPR001254Trypsin_dom
IPR000082SEA_dom
IPR023415LDLR_class-A_CS
IPR001190SRCR
IPR036055LDL_receptor-like_sf
IPR009003Peptidase_S1_PA
IPR036772SRCR-like_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0004252serine-type endopeptidase activity
GO:0005044scavenger receptor activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
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