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Associated RNAi Experiments
InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR003604 | Matrin/U1-C-like, C2H2-type zinc finger | SMART | SM00451 | ZnF_U1_5 | coord: 940..974
e-value: 0.57
score: 14.1
coord: 646..680
e-value: 0.85
score: 12.8
coord: 1148..1182
e-value: 0.19
score: 18.0 |
| IPR013087 | Zinc finger C2H2-type | SMART | SM00355 | c2h2final6 | coord: 594..617
e-value: 0.0065
score: 25.7
coord: 1151..1175
e-value: 0.33
score: 20.0
coord: 649..673
e-value: 3.1E-4
score: 30.1
coord: 362..386
e-value: 23.0
score: 10.2
coord: 999..1023
e-value: 4.8
score: 16.1
coord: 943..967
e-value: 2.2
score: 17.3
coord: 748..772
e-value: 0.083
score: 22.0
coord: 1047..1071
e-value: 0.53
score: 19.3 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 596..617 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 1153..1175 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 1049..1071 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 649..678
score: 8.85 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 1151..1180
score: 9.64 |
| None | No IPR available | PFAM | PF12874 | zf-met | coord: 649..673
e-value: 1.4E-4
score: 22.0
coord: 1151..1173
e-value: 0.072
score: 13.4 |
| None | No IPR available | PFAM | PF00096 | zf-C2H2 | coord: 595..617
e-value: 0.0053
score: 17.1 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 647..673
e-value: 1.4E-7
score: 33.1 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 1149..1181
e-value: 1.6E-5
score: 26.5 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 678..740 |
| None | No IPR available | PANTHER | PTHR24208 | FAMILY NOT NAMED | coord: 316..442 |
| None | No IPR available | PANTHER | PTHR24208 | FAMILY NOT NAMED | coord: 1134..1183
coord: 546..1118 |
| None | No IPR available | PANTHER | PTHR24208:SF84 | ZINC FINGER HOMEOBOX PROTEIN 3 | coord: 1134..1183
coord: 316..442
coord: 546..1118 |
| IPR036236 | Zinc finger C2H2 superfamily | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 1132..1184 |
| IPR036236 | Zinc finger C2H2 superfamily | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 639..679 |
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Tk09212 ID=Tk09212|Name=Tk09212|organism=Tigriopus kingsejongensis|type=polypeptide|length=1272bp
MPTPSRAYGLQSPASSIHHRIGFQGLRTPLLQEPCLIDWPRDRVPGLTAF
TALPLRITGRSPDLILEPLSLLPPSDWPASSDPFSFANAGKIARTIHALK
NTEAPGFDGNPVSVLRMGLGALATQITHFVNKLLSSGIVALGFMIGCVIP
VHKGRGKSSPICILPALSKVMELIVTGDLECANAGGFSMNSDGQLHCNAG
GLCDNLKGTDHNRYPDRFDGKEEVKQQDVAKFGGKIVYNPDGSAFIIEDL
EMSENEALTIPKQEGSIVDDGQAATSDDLPIPAISNAYYISKSSASFNSR
CGATYAHNIQEQNDPETPVVHSYKVRTPWDNSKSEVISHNPLDTSKLSTL
MSYSAVPVKPILMCFICKLSFACTESFVNHLSRAGHNIELKADEKVMLEA
KNCSAIIQNVGKEKLPIVSFLEPLMTTSEKPHASESPPFSPGAISRHLDL
SPKIWGTPNNITISNSSSKSKVPITTSASLTHPCGMTALPATPESPLGES
VSPLVASATPEFRPSRAPSPSTSTPSPAVTATISSYPNLPTNANMLQGTT
IGACPDHVNGRPTGVECSQCDLILNQSRLSGMGWNTARNSCKTLKCPKCN
WHYKYQETLEIHMKEKHPESETTCIYCITSQQHPRLARGETYTCGYKPYR
CEVCNYSTTTKGNLSIHMQSDKHLNNMQELQSGGGLGPSSSSANDKFSSG
SPTTQSRSNQAPTSSSPSQVGALTSPQSPSQTLLSHQSNLHQQQRQNWRC
DVCNYETSVARNLRIHMTSEKHTHNMLSLQQQNAAKSLQHHLSVSMGPSF
PGVSPYITGGFDAKHLLQLKGLLATQTSGSNTEPAAAMADLAYNQALLTQ
LISGGQLPGLPPPDFPNFMNPAFNCATTTAGTLASNNQELQPDAIDLNPL
HLFTCCVCGSFSCDQLDDISSHLSEERSRTRENEVSIVIAGNYLCQLCNY
KTTLKANFQLHCKTDKHLQRLSHVNHIKEGGETNEWKLRCLSTLNPVELK
CNACDFVTNSPHKIQVHVSNQDHQVSAALFSHLQSTERGKDLDYVSYRCV
ICSFDCSGKSSLMNHVRTIAHLQMEQVHQLKKRSQGDLAKCEIGDIFQIN
EATERCQTDQGEVLDARDQYDEENKDTVNSRCVIDSCNFNMDKYFDPNRP
FKCEVCKESFTQKNILLVHYNSVNHLNRLKKSIALPRELIGCSLIEEQQS
NAPDLSLSILKGAAALPTPASSASYDKRYYELIRHQKQHCYKEEDAKRSA
QAQKAAAQAAAQFSVCPKVHHA back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0008270 | zinc ion binding |
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