Tk09298, Tk09298 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk09298
Unique NameTk09298
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length551
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 339..401
e-value: 1.3E-18
score: 77.9
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 341..396
e-value: 2.3E-15
score: 56.0
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 337..397
score: 16.39
IPR001356Homeobox domainCDDcd00086homeodomaincoord: 341..397
e-value: 5.45352E-17
score: 73.0464
IPR001781Zinc finger, LIM-typeSMARTSM00132lim_4coord: 170..224
e-value: 4.5E-13
score: 59.4
coord: 108..162
e-value: 9.7E-14
score: 61.6
IPR001781Zinc finger, LIM-typePFAMPF00412LIMcoord: 171..224
e-value: 5.6E-12
score: 45.6
coord: 109..166
e-value: 6.4E-14
score: 51.8
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 171..206
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 107..169
score: 13.464
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 170..231
score: 10.514
NoneNo IPR availableGENE3D2.10.110.10coord: 109..166
e-value: 1.4E-38
score: 133.9
NoneNo IPR availableGENE3D2.10.110.10coord: 167..233
e-value: 1.4E-38
score: 133.9
NoneNo IPR availableGENE3D1.10.10.60coord: 338..399
e-value: 1.8E-19
score: 71.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 296..333
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 259..341
NoneNo IPR availablePANTHERPTHR24204:SF4TAILUP, ISOFORM Acoord: 94..486
NoneNo IPR availablePANTHERPTHR24204FAMILY NOT NAMEDcoord: 94..486
NoneNo IPR availableCDDcd09366LIM1_Islcoord: 109..163
e-value: 4.61114E-28
score: 103.964
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 104..134
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 137..202
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 372..395
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 319..397

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
snap_masked-scaffold175_size286436-processed-gene-1.22-mRNA-1snap_masked-scaffold175_size286436-processed-gene-1.22-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk09298 ID=Tk09298|Name=Tk09298|organism=Tigriopus kingsejongensis|type=polypeptide|length=551bp
LVAAIERGRKGRSLGMGGAKRGSVRVWSSVKQLLIWRGFSRLKQRGLEWE
AQPVKTGAEISDISDPARGIELWPSLGDPFDADCTMTSSWEDIHHSQASK
SRSTSPRICVGCKGQILDQYILRVAPNKEWHGSCLNCFECKLSLDETCTC
FVRDQKIYCKTDYVRLFSARCAKCQELFSPDDFVMRAKNKIFHLKCFQCL
SCGKQLIQGDEFALQSEKVLCKHCTDCDSRPVGNLGEDYPEERNNNNNSH
ILEEMMATKMRPDSSVKGDFKPPQGETGTEDFDDYDDEDSSDMKFNGYDM
SRSSLEAQKLEAPDSPSGHSSSDGNGRSQETQQVRRSRAGRVRTVLTEKQ
LNMLKSCYQVNKRPDALVKEQLVEMTGLSPRVVRVWFQNKRCKDKKKLSL
LQEKESQKHGYGSMQGVPMIASNPVMSEPGLIPSMANHMADIRHYEAPWK
LLQDMASGSDPDKNQSHLQFQHITRQMHGFDMGRAQFPSPFPEGQESGPL
LPDHYGLIPFPGFMPEDPMGGTSHMSNHSVESTNYTITSLDLATSPLGSE
G
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001356Homeobox_dom
IPR001781Znf_LIM
IPR017970Homeobox_CS
IPR009057Homeobox-like_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
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