Tk10480, Tk10480 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk10480
Unique NameTk10480
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length274
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 215..231
e-value: 0.0046
score: 25.6
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 215..229
e-value: 5.5E-5
score: 23.0
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 215..229
score: 10.576
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 128..196
e-value: 9.6E-14
score: 61.7
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 131..194
e-value: 1.1E-9
score: 37.8
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 127..200
score: 14.215
NoneNo IPR availableGENE3D4.10.60.10coord: 211..243
e-value: 4.6E-5
score: 25.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 228..274
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 125..250
NoneNo IPR availablePANTHERPTHR23147:SF18SERINE/ARGININE-RICH SPLICING FACTOR 7coord: 125..250
NoneNo IPR availableSIGNALP_GRAM_POSITIVESignalP-TMSignalP-TMcoord: 1..11
score: 0.451
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 7..210
e-value: 3.8E-18
score: 67.7
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 119..221

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
snap_masked-scaffold1628_size33005-processed-gene-0.6-mRNA-1snap_masked-scaffold1628_size33005-processed-gene-0.6-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk10480 ID=Tk10480|Name=Tk10480|organism=Tigriopus kingsejongensis|type=polypeptide|length=274bp
MTGSSRSRSRSKSRDSRSPSPPKTQRRSRSRSATPDKEGKPRSKSRSPRS
ASVESKGSKHSKRSRSKSGSPKEGVRKRYKSKSRSRSHSRKRSRSRSRSR
RRSRSRERRSRTRSNDRRDRSPSDDGYRLHVADLEANASKRDIEKVFGKY
GPLKEIWMARSVPCFAFIVYRHKDDAEEASRMADGVDIAGRRIRVSFARP
RTKGHGRRSFDPNMRCYQCGDRGHFSRDCGESKYGYKRPPSPGGGGGRSR
FGGGGGGRGGDRGGDRFGGRRDRY
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
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