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Associated RNAi Experiments
InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR000175 | Sodium:neurotransmitter symporter | PRINTS | PR00176 | NANEUSMPORT | coord: 121..147
score: 39.65
coord: 374..393
score: 41.97
coord: 49..70
score: 69.75
coord: 458..478
score: 43.79
coord: 78..97
score: 49.18
coord: 238..255
score: 63.11
coord: 320..340
score: 37.7 |
| IPR000175 | Sodium:neurotransmitter symporter | PFAM | PF00209 | SNF | coord: 41..550
e-value: 5.7E-197
score: 655.5 |
| IPR000175 | Sodium:neurotransmitter symporter | PANTHER | PTHR11616 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER | coord: 31..574 |
| IPR000175 | Sodium:neurotransmitter symporter | PROSITE | PS00610 | NA_NEUROTRAN_SYMP_1 | coord: 65..79 |
| IPR000175 | Sodium:neurotransmitter symporter | PROSITE | PS50267 | NA_NEUROTRAN_SYMP_3 | coord: 40..554
score: 95.036 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 568..591 |
| None | No IPR available | PANTHER | PTHR11616:SF141 | SODIUM- AND CHLORIDE-DEPENDENT TAURINE TRANSPORTER | coord: 31..574 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 80..101 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 122..149 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 425..448 |
| None | No IPR available | PHOBIUS | NON_CYTOPLASMIC_DOMAIN | Non cytoplasmic domain | coord: 513..523 |
| None | No IPR available | PHOBIUS | NON_CYTOPLASMIC_DOMAIN | Non cytoplasmic domain | coord: 272..290 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 50..68 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 495..512 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 244..271 |
| None | No IPR available | PHOBIUS | NON_CYTOPLASMIC_DOMAIN | Non cytoplasmic domain | coord: 449..453 |
| None | No IPR available | PHOBIUS | CYTOPLASMIC_DOMAIN | Cytoplasmic domain | coord: 551..598 |
| None | No IPR available | PHOBIUS | NON_CYTOPLASMIC_DOMAIN | Non cytoplasmic domain | coord: 69..79 |
| None | No IPR available | PHOBIUS | NON_CYTOPLASMIC_DOMAIN | Non cytoplasmic domain | coord: 150..212 |
| None | No IPR available | PHOBIUS | CYTOPLASMIC_DOMAIN | Cytoplasmic domain | coord: 476..494 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 524..550 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 320..344 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 213..232 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 454..475 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 291..308 |
| None | No IPR available | PHOBIUS | CYTOPLASMIC_DOMAIN | Cytoplasmic domain | coord: 102..121 |
| None | No IPR available | PHOBIUS | NON_CYTOPLASMIC_DOMAIN | Non cytoplasmic domain | coord: 345..378 |
| None | No IPR available | PHOBIUS | CYTOPLASMIC_DOMAIN | Cytoplasmic domain | coord: 309..319 |
| None | No IPR available | PHOBIUS | CYTOPLASMIC_DOMAIN | Cytoplasmic domain | coord: 1..49 |
| None | No IPR available | PHOBIUS | CYTOPLASMIC_DOMAIN | Cytoplasmic domain | coord: 233..243 |
| None | No IPR available | PHOBIUS | CYTOPLASMIC_DOMAIN | Cytoplasmic domain | coord: 405..424 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 379..404 |
| None | No IPR available | CDD | cd11496 | SLC6sbd-TauT-like | coord: 41..567
e-value: 0.0
score: 789.469 |
| None | No IPR available | TMHMM | TMhelix | | coord: 322..344 |
| None | No IPR available | TMHMM | TMhelix | | coord: 122..144 |
| None | No IPR available | TMHMM | TMhelix | | coord: 43..65 |
| None | No IPR available | TMHMM | TMhelix | | coord: 207..229 |
| None | No IPR available | TMHMM | TMhelix | | coord: 287..309 |
| None | No IPR available | TMHMM | TMhelix | | coord: 491..513 |
| None | No IPR available | TMHMM | TMhelix | | coord: 456..478 |
| None | No IPR available | TMHMM | TMhelix | | coord: 528..550 |
| None | No IPR available | TMHMM | TMhelix | | coord: 238..260 |
| None | No IPR available | TMHMM | TMhelix | | coord: 424..446 |
| None | No IPR available | TMHMM | TMhelix | | coord: 80..102 |
| None | No IPR available | TMHMM | TMhelix | | coord: 371..393 |
| IPR037272 | Sodium:neurotransmitter symporter superfamily | SUPERFAMILY | 161070 | SNF-like | coord: 41..549 |
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Tk10850 ID=Tk10850|Name=Tk10850|organism=Tigriopus kingsejongensis|type=polypeptide|length=598bp
MEPVKSTEGRPEASSAYVAVSASEDSLAPTSDNPMEGVPKRDVWGSGTEF
VLACVGFAVGLGNIWRFPYLCYKNGGGAFLVPYFIYVVGAGIPMMFLEVG
LGQFMSQGNISIWNICPIFKGIGIGTTIMAALCNIYYIVVLCWALHYLIA
SFNSELPWASCENPWNTDHCLPMGANKSDIHGKATDPVVEYWENRVLQVT
GGLEEMGGLQWELVGTLFLAWLLVYGCIFKGVHSSGKVVYFTSTFPYLML
TVLLIRGVTLPGAMDGLVFYLKPDFGKLMQSQVWIDAGTQVFYSYCVAFG
GMVALGSYNKYHRNFIQDCTIIACINGFSSMYGGCVIFSVLGYMSFVSGV
PIQEVAESGPGLAFIVYPKAVSLMPGAPIWAVLFFFMIFLVAIDSQFVTC
EGVITAIMDQFSVKFNFRYAREIFSAIYCFGSFLLALCMVTKGGIYVFQI
FDYYSASGMVLLSFTFCECVAVSWFYGVEKWCRNVEDMTGTTVNLWIKFC
WGLLTFSIVQYAPLTYNSTYTYPVWGQLIGMALGVSSVIFVPLYFLYAII
TAPGVKLAEKFRQATKPQMEETLHHRSNQRKSKKTPRKEAQEFQLLTL back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006836 | neurotransmitter transport |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005328 | neurotransmitter:sodium symporter activity |
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