LiceBase GBrowse

 

 

Browser Select Tracks Snapshots Community Tracks Custom Tracks Preferences

 Search

 Search

Landmark or Region: Examples: LSalAtl2s1, LSalAtl2s2, LSalAtl2s15, LSalAtl2s32743, LSalAtl2s251:1,060,538..1,063,274.	Download Decorated FASTA File Download Protein Sequence File Download Sequence File Download Spliced Coding Sequence File Download Track Data
Data Source Atlantic salmon louse genome (LSalAtl2s) Tigriopus kingsejongensis genome	Scroll/Zoom:     Show 500 kbp Show 200 kbp Show 100 kbp Show 50 kbp Show 20 kbp Show 10.31 kbp Show 10 kbp Show 5 kbp Show 2 kbp Show 1 kbp Show 200 bp Show 100 bp     Flip

 Overview

 Overview

 

 Region

 Region

 

  GC Content  

 Details

 Details

 

  Ensembl Genes  

  CDS  

  BLASTp vs Swissprot  

  Transcripts + CPM  

  tRNAs  

  Repeats  

  6-frame translation  

Clear highlighting

<< Back to Browser Show Active Tracks Only Show Favorites Only Clear All Favorites

 Tracks

 Tracks

 

 Chalpro1

 Chalpro1

 All on All off 

1-ch1_S60_L00X strand specific [?] [showing 1/2 subtracks]	28-ch28_S10_L00X strand specific [?] [showing 1/2 subtracks]	46-ch52_S27_L00X strand specific [?] [showing 1/2 subtracks]
10-ch10_S46_L00X strand specific [?] [showing 1/2 subtracks]	29-ch29_S11_L00X strand specific [?] [showing 1/2 subtracks]	47-ch53_S28_L00X strand specific [?] [showing 1/2 subtracks]
11-ch11_S47_L00X strand specific [?] [showing 1/2 subtracks]	3-ch3_S55_L00X strand specific [?] [showing 1/2 subtracks]	48-ch54_S34_L00X strand specific [?] [showing 1/2 subtracks]
12-ch12_S44_L00X strand specific [?] [showing 1/2 subtracks]	30-ch30_S9_L00X strand specific [?] [showing 1/2 subtracks]	49-ch55_S33_L00X strand specific [?] [showing 1/2 subtracks]
13-ch13_S45_L00X strand specific [?] [showing 1/2 subtracks]	31-ch31_S14_L00X strand specific [?] [showing 1/2 subtracks]	5-ch5_S53_L00X strand specific [?] [showing 1/2 subtracks]
14-ch14_S50_L00X strand specific [?] [showing 1/2 subtracks]	32-ch32_S17_L00X strand specific [?] [showing 1/2 subtracks]	50-ch56_S32_L00X strand specific [?] [showing 1/2 subtracks]
15-ch15_S51_L00X strand specific [?] [showing 1/2 subtracks]	33-ch33_S18_L00X strand specific [?] [showing 1/2 subtracks]	51-ch57_S31_L00X strand specific [?] [showing 1/2 subtracks]
16-ch16_S48_L00X strand specific [?] [showing 1/2 subtracks]	34-ch34_S15_L00X strand specific [?] [showing 1/2 subtracks]	52-ch58_S38_L00X strand specific [?] [showing 1/2 subtracks]
17-ch17_S49_L00X strand specific [?] [showing 1/2 subtracks]	35-ch35_S16_L00X strand specific [?] [showing 1/2 subtracks]	53-ch59_S37_L00X strand specific [?] [showing 1/2 subtracks]
18-ch18_S7_L00X strand specific [?] [showing 1/2 subtracks]	36-ch36_S21_L00X strand specific [?] [showing 1/2 subtracks]	54-ch60_S36_L00X strand specific [?] [showing 1/2 subtracks]
19-ch19_S8_L00X strand specific [?] [showing 1/2 subtracks]	37-ch37_S22_L00X strand specific [?] [showing 1/2 subtracks]	55-U1_S35_L00X strand specific [?] [showing 1/2 subtracks]
2-ch2_S54_L00X strand specific [?] [showing 1/2 subtracks]	38-ch38_S19_L00X strand specific [?] [showing 1/2 subtracks]	56-U3_S42_L00X strand specific [?] [showing 1/2 subtracks]
20-ch20_S5_L00X strand specific [?] [showing 1/2 subtracks]	39-ch39_S20_L00X strand specific [?] [showing 1/2 subtracks]	57-U9_S41_L00X strand specific [?] [showing 1/2 subtracks]
21-ch21_S6_L00X strand specific [?] [showing 1/2 subtracks]	4-ch4_S52_L00X strand specific [?] [showing 1/2 subtracks]	58-KJ_S40_L00X strand specific [?] [showing 1/2 subtracks]
22-ch22_S3_L00X strand specific [?] [showing 1/2 subtracks]	40-ch40_S25_L00X strand specific [?] [showing 1/2 subtracks]	59-AK-chal1_S39_L00X strand specific [?] [showing 1/2 subtracks]
23-ch23_S4_L00X strand specific [?] [showing 1/2 subtracks]	41-ch41_S26_L00X strand specific [?] [showing 1/2 subtracks]	6-ch6_S58_L00X strand specific [?] [showing 1/2 subtracks]
24-ch24_S1_L00X strand specific [?] [showing 1/2 subtracks]	42-ch42_S23_L00X strand specific [?] [showing 1/2 subtracks]	60-AK-chal2_S43_L00X strand specific [?] [showing 1/2 subtracks]
25-ch25_S2_L00X strand specific [?] [showing 1/2 subtracks]	43-ch43_S24_L00X strand specific [?] [showing 1/2 subtracks]	7-ch7_S59_L00X strand specific [?] [showing 1/2 subtracks]
26-ch26_S12_L00X strand specific [?] [showing 1/2 subtracks]	44-ch44_S29_L00X strand specific [?] [showing 1/2 subtracks]	8-ch8_S56_L00X strand specific [?] [showing 1/2 subtracks]
27-ch27_S13_L00X strand specific [?] [showing 1/2 subtracks]	45-ch45_S30_L00X strand specific [?] [showing 1/2 subtracks]	9-ch9_S57_L00X strand specific [?] [showing 1/2 subtracks]

 Chalpro2

 Chalpro2

 All on All off 

1-CH46_S61 strand specific [?] [showing 1/2 subtracks]	4-CH61_S11 strand specific [?] [showing 1/2 subtracks]	7-CH64_S41 strand specific [?] [showing 1/2 subtracks]
2-CH47_S72 strand specific [?] [showing 1/2 subtracks]	5-CH62_S21 strand specific [?] [showing 1/2 subtracks]	8-CH65_S51 strand specific [?] [showing 1/2 subtracks]
3-CH48_S1 strand specific [?] [showing 1/2 subtracks]	6-CH63_S31 strand specific [?] [showing 1/2 subtracks]	9-CH66_S62 strand specific [?] [showing 1/2 subtracks]

 Data 

 Data 

 CPM

 CPM

 All on All off 

Transcripts + CPM

 FPKM

 FPKM

 All on All off 

Transcripts + FPKM

 General

 General

 All on All off 

DNA/GC Content

 Genes 

 Genes 

 Genes

 Genes

 All on All off 

Consensus clusters [?]

FN ESTs [?]

Genbank ESTs [?]

 Coding

 Coding

 All on All off 

CDS [?]

Ensembl Genes [?]

 RNA

 RNA

 All on All off 

Noncoding RNAs

tRNAs [?]

 Transcript

 Transcript

 All on All off 

Ensembl transcripts [?]

 Other 

 Other 

 Repeats

 Repeats

 All on All off 

Repeats

 Reads

 Reads

 All on All off 

Adult females [?]	Copepodids T3+T4 (HBR-8) strand specific [?] [showing 1/2 subtracks]	Nauplius II [?]
Adult males [?]	Copepodids T5+T6 (HBR-9) [?]	Ovaries (HBR-1) [?]
Antenna adult female (HBR-6) [?]	Copepodids T5+T6 (HBR-9) strand specific [?] [showing 1/2 subtracks]	Ovaries (HBR-1) strand specific [?] [showing 1/2 subtracks]
Antenna adult female (HBR-6) strand specific (non ss-protocol!) [?] [showing 1/2 subtracks]	Feet (adult male/female) (HBR-3) [?]	Planctonic copepodites [?]
Antenna adult male (HBR-4N) [?]	Feet adult male/female (HBR-3) strand specific [?] [showing 1/2 subtracks]	Preadult females [?]
Antenna adult male (HBR-4N) strand specific [?] [showing 1/2 subtracks]	Fertilised egg strings 0-24h [?]	Preadult males [?]
Antenna copepodids (HBR-5) [?]	Fertilised egg strings day 2-7 [?]	Testis (adult) (HBR-2) [?]
Antenna copepodids (HBR-5) strand specific [?] [showing 1/2 subtracks]	Infected glands VP1 [?]	Testis adult (HBR-2) strand specific [?] [showing 1/2 subtracks]
Chalimus [?]	Infected glands VP2 [?]	Unfertilised egg strings [?]
Copepodids T1+T2 (HBR-7) [?]	Intestine (HBR-10) [?]	vRNA strand specific [?] [showing 1/2 subtracks]
Copepodids T1+T2 (HBR-7) strand specific [?] [showing 1/2 subtracks]	Intestine (HBR-10) strand specific [?] [showing 1/2 subtracks]
Copepodids T3+T4 (HBR-8) [?]	Nauplius I [?]

 Region 

 Region 

 Region

 Region

 All on All off 

GC Content

 Translation

 Translation

 All on All off 

3-frame translation (forward)

3-frame translation (reverse)

6-frame translation

 Analysis 

 Analysis 

 BLASTP

 BLASTP

 All on All off 

BLASTp vs Swissprot

 IRE

 IRE

 All on All off 

SIREs high-qulity predictions [?]

 Microarray Oligos

 Microarray Oligos

 All on All off 

Microarray oligos [?] [showing 3/3 subtracks]

Snapshots

Snapshot Name

Snapshot Timestamp [GMT]

Community Tracks

Filter: Showing 1 to 9 out of 9 files.

 [Add]

RACE PCR alignment

uploaded by an anonymous user
public

No description

Source files:

• ConfigurationThu Jan 1 01:00:00 19700 bytes 

Sharing:
Track is public, used by 7 user(s).

 

complete Interrupted [Resume]

 [Add]

RACE PCR alignment   

uploaded by an anonymous user
public

No description

Source files:

• ConfigurationThu Jan 1 01:00:00 19700 bytes 

Sharing:
Track is public, used by 4 user(s).

 

complete Interrupted [Resume]

 [Add]

EMLSAT0441-race 

uploaded by an anonymous user
public

No description

Source files:

• ConfigurationThu Jan 1 01:00:00 19700 bytes 

Sharing:
Track is public, used by 3 user(s).

 

complete Interrupted [Resume]

 [Add]

E75

uploaded by an anonymous user
public

No description

Source files:

• upload_97854Fri Feb 24 11:38:12 20176283 bytes 
• ConfigurationFri Feb 24 11:38:12 2017618 bytes 

Sharing:
Track is public, used by 3 user(s).

 

processing complete Interrupted [Resume]

 [Add]

upload_66444

uploaded by an anonymous user
public

No description

Source files:

• upload_66444Tue Sep 3 14:32:43 20192125 bytes 
• ConfigurationTue Sep 3 14:32:43 2019616 bytes 

Sharing:
Track is public, used by 2 user(s).

 

processing complete Interrupted [Resume]

 [Add]

alignment of TEP1-AA

uploaded by an anonymous user
public

No description

Source files:

• upload_83663Sun Apr 18 20:32:45 20216092 bytes 
• ConfigurationSun Apr 18 20:32:45 20212975 bytes 

Sharing:
Track is public, used by 3 user(s).

 

processing complete Interrupted [Resume]

 [Add]

emlsag2585.match.gff3

uploaded by an anonymous user
public

No description

Source files:

• emlsag2585.match.gff3Mon Apr 19 15:17:37 20215401 bytes 
• ConfigurationMon Apr 19 15:17:37 2021665 bytes 

Sharing:
Track is public, used by 1 user(s).

 

processing complete Interrupted [Resume]

 [Add]

Search for IREs in MVP and TEP1

uploaded by an anonymous user
public

No description

Source files:

• upload_68478Tue Sep 7 10:57:14 2021304 bytes 
• ConfigurationTue Sep 7 10:57:14 2021602 bytes 

Sharing:
Track is public, used by 1 user(s).

 

processing complete Interrupted [Resume]

 [Add]

gmap.out

uploaded by an anonymous user
public

No description

Source files:

• gmap.outMon Oct 4 20:30:01 202114931 bytes 
• ConfigurationMon Oct 4 20:30:01 2021596 bytes 

Sharing:
Track is public, used by 1 user(s).

 

processing complete Interrupted [Resume]

Custom Tracks

[Help with uploading custom tracks]

There are no tracks yet.

Add custom tracks : [From text] [From a URL] [From a file]

Show grid	Image Width 450 640 800 1024 1280 1600 1800 2000 2400	Highlight feature(s) (feature1 feature2...) Clear highlighting
Cache tracks		Highlight regions (region1:start..end region2:start..end) Clear highlighting
Show tooltips		Region Size (bp) 20000 10000 5000 1000

The Generic Genome Browser. For questions about the data at this site, please contact its webmaster (admin@licebase.org). For support of the browser software only, send email to gmod-gbrowse@lists.sourceforge.net or visit the GMOD Project web pages.