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Landmark or Region: Examples: LSalAtl2s1, LSalAtl2s2, LSalAtl2s15, LSalAtl2s32743, LSalAtl2s251:1,060,538..1,063,274.	Download Decorated FASTA File Download Protein Sequence File Download Sequence File Download Spliced Coding Sequence File Download Track Data
Data Source Atlantic salmon louse genome (LSalAtl2s) Tigriopus kingsejongensis genome	Scroll/Zoom:     Show 500 kbp Show 200 kbp Show 100 kbp Show 50 kbp Show 20 kbp Show 10 kbp Show 5 kbp Show 2 kbp Show 1.089 kbp Show 1 kbp Show 200 bp Show 100 bp     Flip

The following 15 regions match your request.

 

LSalAtl2s1195

 

LSalAtl2s28

 

LSalAtl2s109

 

LSalAtl2s4685

 

 

 

LSalAtl2s294

 

LSalAtl2s1260

 

LSalAtl2s242

 

LSalAtl2s2

 

LSalAtl2s921

 

LSalAtl2s289

 

LSalAtl2s224

 

LSalAtl2s101

 

LSalAtl2s353

Name	Type	Description	Position	Match Score
EMLSAG00000001180	gene	Innexin inx2	LSalAtl2s1195:1905..3020	n/a
EMLSAG00000005385	gene	Innexin inx2	LSalAtl2s28:751680..888661	n/a
EMLSAG00000000618	gene	Innexin inx2	LSalAtl2s109:650314..654817	n/a
EMLSAG00000007919	gene	Innexin inx2	LSalAtl2s4685:1400..2030	n/a
EMLSAG00000005466	gene	Innexin inx2	LSalAtl2s294:157402..159345	n/a
EMLSAG00000005467	gene	Innexin inx2	LSalAtl2s294:184919..205719	n/a
EMLSAG00000005471	gene	Innexin inx2	LSalAtl2s294:246615..258268	n/a
EMLSAG00000001523	gene	Innexin inx2	LSalAtl2s1260:26782..48182	n/a
EMLSAG00000004654	gene	Innexin inx2	LSalAtl2s242:732330..738978	n/a
EMLSAG00000005602	gene	Innexin inx2	LSalAtl2s2:843530..868630	n/a
EMLSAG00000012505	gene	Innexin inx2	LSalAtl2s921:15362..16768	n/a
EMLSAG00000005358	gene	Innexin inx2	LSalAtl2s289:204701..210780	n/a
EMLSAG00000004275	gene	Innexin inx2	LSalAtl2s224:305474..306610	n/a
EMLSAG00000000105	gene	Innexin inx2	LSalAtl2s101:144465..145553	n/a
EMLSAG00000006456	gene	Innexin inx2	LSalAtl2s353:262181..263762	n/a

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 Tracks

 Tracks

 

 Chalpro1

 Chalpro1

 All on All off 

1-ch1_S60_L00X strand specific [?] [showing 1/2 subtracks]	28-ch28_S10_L00X strand specific [?] [showing 1/2 subtracks]	46-ch52_S27_L00X strand specific [?] [showing 1/2 subtracks]
10-ch10_S46_L00X strand specific [?] [showing 1/2 subtracks]	29-ch29_S11_L00X strand specific [?] [showing 1/2 subtracks]	47-ch53_S28_L00X strand specific [?] [showing 1/2 subtracks]
11-ch11_S47_L00X strand specific [?] [showing 1/2 subtracks]	3-ch3_S55_L00X strand specific [?] [showing 1/2 subtracks]	48-ch54_S34_L00X strand specific [?] [showing 1/2 subtracks]
12-ch12_S44_L00X strand specific [?] [showing 1/2 subtracks]	30-ch30_S9_L00X strand specific [?] [showing 1/2 subtracks]	49-ch55_S33_L00X strand specific [?] [showing 1/2 subtracks]
13-ch13_S45_L00X strand specific [?] [showing 1/2 subtracks]	31-ch31_S14_L00X strand specific [?] [showing 1/2 subtracks]	5-ch5_S53_L00X strand specific [?] [showing 1/2 subtracks]
14-ch14_S50_L00X strand specific [?] [showing 1/2 subtracks]	32-ch32_S17_L00X strand specific [?] [showing 1/2 subtracks]	50-ch56_S32_L00X strand specific [?] [showing 1/2 subtracks]
15-ch15_S51_L00X strand specific [?] [showing 1/2 subtracks]	33-ch33_S18_L00X strand specific [?] [showing 1/2 subtracks]	51-ch57_S31_L00X strand specific [?] [showing 1/2 subtracks]
16-ch16_S48_L00X strand specific [?] [showing 1/2 subtracks]	34-ch34_S15_L00X strand specific [?] [showing 1/2 subtracks]	52-ch58_S38_L00X strand specific [?] [showing 1/2 subtracks]
17-ch17_S49_L00X strand specific [?] [showing 1/2 subtracks]	35-ch35_S16_L00X strand specific [?] [showing 1/2 subtracks]	53-ch59_S37_L00X strand specific [?] [showing 1/2 subtracks]
18-ch18_S7_L00X strand specific [?] [showing 1/2 subtracks]	36-ch36_S21_L00X strand specific [?] [showing 1/2 subtracks]	54-ch60_S36_L00X strand specific [?] [showing 1/2 subtracks]
19-ch19_S8_L00X strand specific [?] [showing 1/2 subtracks]	37-ch37_S22_L00X strand specific [?] [showing 1/2 subtracks]	55-U1_S35_L00X strand specific [?] [showing 1/2 subtracks]
2-ch2_S54_L00X strand specific [?] [showing 1/2 subtracks]	38-ch38_S19_L00X strand specific [?] [showing 1/2 subtracks]	56-U3_S42_L00X strand specific [?] [showing 1/2 subtracks]
20-ch20_S5_L00X strand specific [?] [showing 1/2 subtracks]	39-ch39_S20_L00X strand specific [?] [showing 1/2 subtracks]	57-U9_S41_L00X strand specific [?] [showing 1/2 subtracks]
21-ch21_S6_L00X strand specific [?] [showing 1/2 subtracks]	4-ch4_S52_L00X strand specific [?] [showing 1/2 subtracks]	58-KJ_S40_L00X strand specific [?] [showing 1/2 subtracks]
22-ch22_S3_L00X strand specific [?] [showing 1/2 subtracks]	40-ch40_S25_L00X strand specific [?] [showing 1/2 subtracks]	59-AK-chal1_S39_L00X strand specific [?] [showing 1/2 subtracks]
23-ch23_S4_L00X strand specific [?] [showing 1/2 subtracks]	41-ch41_S26_L00X strand specific [?] [showing 1/2 subtracks]	6-ch6_S58_L00X strand specific [?] [showing 1/2 subtracks]
24-ch24_S1_L00X strand specific [?] [showing 1/2 subtracks]	42-ch42_S23_L00X strand specific [?] [showing 1/2 subtracks]	60-AK-chal2_S43_L00X strand specific [?] [showing 1/2 subtracks]
25-ch25_S2_L00X strand specific [?] [showing 1/2 subtracks]	43-ch43_S24_L00X strand specific [?] [showing 1/2 subtracks]	7-ch7_S59_L00X strand specific [?] [showing 1/2 subtracks]
26-ch26_S12_L00X strand specific [?] [showing 1/2 subtracks]	44-ch44_S29_L00X strand specific [?] [showing 1/2 subtracks]	8-ch8_S56_L00X strand specific [?] [showing 1/2 subtracks]
27-ch27_S13_L00X strand specific [?] [showing 1/2 subtracks]	45-ch45_S30_L00X strand specific [?] [showing 1/2 subtracks]	9-ch9_S57_L00X strand specific [?] [showing 1/2 subtracks]

 Chalpro2

 Chalpro2

 All on All off 

1-CH46_S61 strand specific [?] [showing 1/2 subtracks]	4-CH61_S11 strand specific [?] [showing 1/2 subtracks]	7-CH64_S41 strand specific [?] [showing 1/2 subtracks]
2-CH47_S72 strand specific [?] [showing 1/2 subtracks]	5-CH62_S21 strand specific [?] [showing 1/2 subtracks]	8-CH65_S51 strand specific [?] [showing 1/2 subtracks]
3-CH48_S1 strand specific [?] [showing 1/2 subtracks]	6-CH63_S31 strand specific [?] [showing 1/2 subtracks]	9-CH66_S62 strand specific [?] [showing 1/2 subtracks]

 Data 

 Data 

 CPM

 CPM

 All on All off 

Transcripts + CPM

 FPKM

 FPKM

 All on All off 

Transcripts + FPKM

 General

 General

 All on All off 

DNA/GC Content

 Genes 

 Genes 

 Genes

 Genes

 All on All off 

Consensus clusters [?]

FN ESTs [?]

Genbank ESTs [?]

 Coding

 Coding

 All on All off 

CDS [?]

Ensembl Genes [?]

 RNA

 RNA

 All on All off 

Noncoding RNAs

tRNAs [?]

 Transcript

 Transcript

 All on All off 

Ensembl transcripts [?]

 Other 

 Other 

 Repeats

 Repeats

 All on All off 

Repeats

 Reads

 Reads

 All on All off 

Adult females [?]	Copepodids T3+T4 (HBR-8) strand specific [?] [showing 1/2 subtracks]	Nauplius II [?]
Adult males [?]	Copepodids T5+T6 (HBR-9) [?]	Ovaries (HBR-1) [?]
Antenna adult female (HBR-6) [?]	Copepodids T5+T6 (HBR-9) strand specific [?] [showing 1/2 subtracks]	Ovaries (HBR-1) strand specific [?] [showing 1/2 subtracks]
Antenna adult female (HBR-6) strand specific (non ss-protocol!) [?] [showing 1/2 subtracks]	Feet (adult male/female) (HBR-3) [?]	Planctonic copepodites [?]
Antenna adult male (HBR-4N) [?]	Feet adult male/female (HBR-3) strand specific [?] [showing 1/2 subtracks]	Preadult females [?]
Antenna adult male (HBR-4N) strand specific [?] [showing 1/2 subtracks]	Fertilised egg strings 0-24h [?]	Preadult males [?]
Antenna copepodids (HBR-5) [?]	Fertilised egg strings day 2-7 [?]	Testis (adult) (HBR-2) [?]
Antenna copepodids (HBR-5) strand specific [?] [showing 1/2 subtracks]	Infected glands VP1 [?]	Testis adult (HBR-2) strand specific [?] [showing 1/2 subtracks]
Chalimus [?]	Infected glands VP2 [?]	Unfertilised egg strings [?]
Copepodids T1+T2 (HBR-7) [?]	Intestine (HBR-10) [?]	vRNA strand specific [?] [showing 1/2 subtracks]
Copepodids T1+T2 (HBR-7) strand specific [?] [showing 1/2 subtracks]	Intestine (HBR-10) strand specific [?] [showing 1/2 subtracks]
Copepodids T3+T4 (HBR-8) [?]	Nauplius I [?]

 Region 

 Region 

 Region

 Region

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GC Content

 Translation

 Translation

 All on All off 

3-frame translation (forward)

3-frame translation (reverse)

6-frame translation

 Analysis 

 Analysis 

 BLASTP

 BLASTP

 All on All off 

BLASTp vs Swissprot

 IRE

 IRE

 All on All off 

SIREs high-qulity predictions [?]

 Microarray Oligos

 Microarray Oligos

 All on All off 

Microarray oligos [?] [showing 3/3 subtracks]

Snapshots

Snapshot Name

Snapshot Timestamp [GMT]

Community Tracks

Filter: Showing 1 to 9 out of 9 files.

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RACE PCR alignment

uploaded by an anonymous user
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• ConfigurationThu Jan 1 01:00:00 19700 bytes 

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RACE PCR alignment   

uploaded by an anonymous user
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Source files:

• ConfigurationThu Jan 1 01:00:00 19700 bytes 

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EMLSAT0441-race 

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• ConfigurationThu Jan 1 01:00:00 19700 bytes 

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E75

uploaded by an anonymous user
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Source files:

• upload_97854Fri Feb 24 11:38:12 20176283 bytes 
• ConfigurationFri Feb 24 11:38:12 2017618 bytes 

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upload_66444

uploaded by an anonymous user
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Source files:

• upload_66444Tue Sep 3 14:32:43 20192125 bytes 
• ConfigurationTue Sep 3 14:32:43 2019616 bytes 

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alignment of TEP1-AA

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Source files:

• upload_83663Sun Apr 18 20:32:45 20216092 bytes 
• ConfigurationSun Apr 18 20:32:45 20212975 bytes 

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emlsag2585.match.gff3

uploaded by an anonymous user
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Source files:

• emlsag2585.match.gff3Mon Apr 19 15:17:37 20215401 bytes 
• ConfigurationMon Apr 19 15:17:37 2021665 bytes 

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Search for IREs in MVP and TEP1

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• upload_68478Tue Sep 7 10:57:14 2021304 bytes 
• ConfigurationTue Sep 7 10:57:14 2021602 bytes 

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gmap.out

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Source files:

• gmap.outMon Oct 4 20:30:01 202114931 bytes 
• ConfigurationMon Oct 4 20:30:01 2021596 bytes 

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