LiceBase GBrowse

 

 

Browser Select Tracks Snapshots Community Tracks Custom Tracks Preferences

 Search

 Search

Landmark or Region: Examples: scaffold1000_size72005.	Download Decorated FASTA File Download Protein Sequence File Download Sequence File Download Spliced Coding Sequence File Download Track Data
Data Source Atlantic salmon louse genome (LSalAtl2s) Tigriopus kingsejongensis genome	Scroll/Zoom:     Show 200 kbp Show 100 kbp Show 50 kbp Show 20 kbp Show 10 kbp Show 5 kbp Show 3.645 kbp Show 2 kbp Show 1 kbp Show 200 bp Show 100 bp     Flip

The following 5 regions match your request.

 

scaffold127_size327531

 

scaffold167_size293163

 

scaffold133_size323035

 

scaffold488_size158317

 

scaffold93_size381549

Name	Type	Description	Position	Match Score
cytochrome p450 partial	gene	F:metal ion binding	scaffold127_size327531:227260..229076	n/a
cytochrome p450 partial	gene	F:metal ion binding	scaffold167_size293163:118290..121934	n/a
cytochrome p450 partial	gene	F:binding	scaffold133_size323035:131220..159481	n/a
cytochrome p450 partial	gene	F:oxidoreductase activity	scaffold488_size158317:53321..57185	n/a
cytochrome p450 partial	gene	F:metal ion binding	scaffold93_size381549:93066..94768	n/a

<< Back to Browser Show Active Tracks Only Show Favorites Only Clear All Favorites

 Tracks

 Tracks

 

 General

 General

 All on All off 

DNA/GC Content

 Genes 

 Genes 

 Coding

 Coding

 All on All off 

CDS [?]

Maker Genes [?]

 RNA

 RNA

 All on All off 

Noncoding RNAs

tRNAs [?]

 Transcript

 Transcript

 All on All off 

transcripts [?]

 Other 

 Other 

 Repeats

 Repeats

 All on All off 

Repeats

 Region 

 Region 

 Region

 Region

 All on All off 

GC Content

 Translation

 Translation

 All on All off 

3-frame translation (forward)

3-frame translation (reverse)

6-frame translation

Snapshots

Snapshot Name

Snapshot Timestamp [GMT]

Community Tracks

Filter: Showing 0 files.

There are no available unused public available tracks. Select "Custom Tracks" to see ones you've already added to your session.

Custom Tracks

[Help with uploading custom tracks]

There are no tracks yet.

Add custom tracks : [From text] [From a URL] [From a file]

Show grid	Image Width 450 640 800 1024 1280 1600 1800 2000 2400	Highlight feature(s) (feature1 feature2...) Clear highlighting
Cache tracks		Highlight regions (region1:start..end region2:start..end) Clear highlighting
Show tooltips		Region Size (bp) 20000 10000 5000 1000

The Generic Genome Browser. For questions about the data at this site, please contact its webmaster (admin@licebase.org). For support of the browser software only, send email to gmod-gbrowse@lists.sourceforge.net or visit the GMOD Project web pages.