EMLSAG00000000138, EMLSAG00000000138-682904 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000138
Unique NameEMLSAG00000000138-682904
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000000138 vs. C. finmarchicus
Match: gi|592866340|gb|GAXK01091222.1| (TSA: Calanus finmarchicus comp261078_c2_seq3 transcribed RNA sequence)

HSP 1 Score: 58.5362 bits (140), Expect = 2.699e-10
Identity = 30/73 (41.10%), Postives = 48/73 (65.75%), Query Frame = 0
Query:    2 INLEKDVDNFDMTYILDCVKENNLRNDLCNYRLG---VSLFEEYDPYDILIGEKTWIDL-----KKRKNIEEE 66
            ++L +D+D FD  Y+LDCVKE+ +  +L +YR+     S+ E+YDP D+L+G K W D+     +K  +IEE+
Sbjct:  215 VSLRRDLDIFDYRYVLDCVKEDMILPNLLDYRINSHLPSILEQYDPVDVLLGYKRWKDIIEVEGEKVSDIEED 433          
BLAST of EMLSAG00000000138 vs. C. finmarchicus
Match: gi|592866341|gb|GAXK01091221.1| (TSA: Calanus finmarchicus comp261078_c2_seq2 transcribed RNA sequence)

HSP 1 Score: 58.5362 bits (140), Expect = 5.381e-10
Identity = 30/87 (34.48%), Postives = 52/87 (59.77%), Query Frame = 0
Query:    2 INLEKDVDNFDMTYILDCVKENNLRNDLCNYRLG---VSLFEEYDPYDILIGEKTWIDLKKRKNIEEEYMEIDNFDKALLTPSANSK 85
            ++L +D D FD  Y+LDCVKE+ +  ++ +YR+     S+ E+YDP D+L+G K W D+ + +      +E D+ D     P ++S+
Sbjct:  222 VSLRRDQDMFDHRYVLDCVKEDMILPNMLDYRINSHLPSILEQYDPVDVLLGYKRWRDIPEAEGERVSDIEEDDCDDGF--PGSDSQ 476          
BLAST of EMLSAG00000000138 vs. C. finmarchicus
Match: gi|592851079|gb|GAXK01106465.1| (TSA: Calanus finmarchicus comp119958_c6_seq2 transcribed RNA sequence)

HSP 1 Score: 51.9878 bits (123), Expect = 1.899e-7
Identity = 28/66 (42.42%), Postives = 40/66 (60.61%), Query Frame = 0
Query:    2 INLEKDVDNFDMTYILDCVKENNLRNDLCNYRLG---VSLFEEYDPYDILIGEKTWIDLKKRKNIE 64
            I ++KD D FD  YI+DCV ++ L  +L +YR+     S+FE Y+P DIL G   W D+ K+   E
Sbjct:  223 IPIKKDQDMFDYKYIIDCVDKDELLPNLKDYRITSHVPSIFENYNPVDILQGILKWSDVPKKPTGE 420          
BLAST of EMLSAG00000000138 vs. C. finmarchicus
Match: gi|592851080|gb|GAXK01106464.1| (TSA: Calanus finmarchicus comp119958_c6_seq1 transcribed RNA sequence)

HSP 1 Score: 51.9878 bits (123), Expect = 1.901e-7
Identity = 28/66 (42.42%), Postives = 40/66 (60.61%), Query Frame = 0
Query:    2 INLEKDVDNFDMTYILDCVKENNLRNDLCNYRLG---VSLFEEYDPYDILIGEKTWIDLKKRKNIE 64
            I ++KD D FD  YI+DCV ++ L  +L +YR+     S+FE Y+P DIL G   W D+ K+   E
Sbjct:  223 IPIKKDQDMFDYKYIIDCVDKDELLPNLKDYRITSHVPSIFENYNPVDILQGILKWSDVPKKPTGE 420          
BLAST of EMLSAG00000000138 vs. C. finmarchicus
Match: gi|592814783|gb|GAXK01139785.1| (TSA: Calanus finmarchicus comp2411692_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 3.314e+0
Identity = 17/53 (32.08%), Postives = 25/53 (47.17%), Query Frame = 0
Query:   63 IEEEYMEIDNFDKALLTPSANSKNRKNCNTLWLSQTDVLKSKEHEAFSKTCML 115
            I       ++F   L T       RKNCN+ W      L+SK + +FSK C++
Sbjct:   85 IAHILQTFNHFIAVLPTIKRTLVPRKNCNSYWF-----LRSKLYSSFSKDCVM 228          
BLAST of EMLSAG00000000138 vs. L. salmonis peptides
Match: EMLSAP00000000138 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1021:425:1572:-1 gene:EMLSAG00000000138 transcript:EMLSAT00000000138 description:"maker-LSalAtl2s1021-snap-gene-0.40")

HSP 1 Score: 334.724 bits (857), Expect = 2.373e-118
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0
Query:    1 MINLEKDVDNFDMTYILDCVKENNLRNDLCNYRLGVSLFEEYDPYDILIGEKTWIDLKKRKNIEEEYMEIDNFDKALLTPSANSKNRKNCNTLWLSQTDVLKSKEHEAFSKTCMLQSLNYSSQTKFLATWNLRQKDSSKEPEKKERSSDSYSLSKCNNSWYTNDP 165
            MINLEKDVDNFDMTYILDCVKENNLRNDLCNYRLGVSLFEEYDPYDILIGEKTWIDLKKRKNIEEEYMEIDNFDKALLTPSANSKNRKNCNTLWLSQTDVLKSKEHEAFSKTCMLQSLNYSSQTKFLATWNLRQKDSSKEPEKKERSSDSYSLSKCNNSWYTNDP
Sbjct:    1 MINLEKDVDNFDMTYILDCVKENNLRNDLCNYRLGVSLFEEYDPYDILIGEKTWIDLKKRKNIEEEYMEIDNFDKALLTPSANSKNRKNCNTLWLSQTDVLKSKEHEAFSKTCMLQSLNYSSQTKFLATWNLRQKDSSKEPEKKERSSDSYSLSKCNNSWYTNDP 165          
BLAST of EMLSAG00000000138 vs. L. salmonis peptides
Match: EMLSAP00000005253 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2800:1463:11742:1 gene:EMLSAG00000005253 transcript:EMLSAT00000005253 description:"maker-LSalAtl2s2800-snap-gene-0.6")

HSP 1 Score: 185.267 bits (469), Expect = 2.496e-57
Identity = 90/102 (88.24%), Postives = 95/102 (93.14%), Query Frame = 0
Query:    1 MINLEKDVDNFDMTYILDCVKENNLRNDLCNYRLGVSLFEEYDPYDILIGEKTWIDLKKRKNIEEEYMEIDNFDKALLTPSANSKNRKNCNTLWLSQTDVLK 102
            MINLEKDVDNFDMTYILDCVKENNLRNDLCNYRLGVSLFEEYDPYDILIGEKTWIDLKKRKNIEEEYME+DNFDKALLTPSANSKNRK+ +  +  Q  +LK
Sbjct:   71 MINLEKDVDNFDMTYILDCVKENNLRNDLCNYRLGVSLFEEYDPYDILIGEKTWIDLKKRKNIEEEYMELDNFDKALLTPSANSKNRKSNS--YDGQVHILK 170          
BLAST of EMLSAG00000000138 vs. L. salmonis peptides
Match: EMLSAP00000005371 (pep:novel supercontig:LSalAtl2s:LSalAtl2s28:125235:128394:-1 gene:EMLSAG00000005371 transcript:EMLSAT00000005371 description:"maker-LSalAtl2s28-augustus-gene-1.51")

HSP 1 Score: 151.369 bits (381), Expect = 2.145e-42
Identity = 75/103 (72.82%), Postives = 85/103 (82.52%), Query Frame = 0
Query:    1 MINLEKDVDNFDMTYILDCVKENNLRNDLCNYRLGVSLFEEYDPYDILIGEKTWIDLKKRKNIEEEYMEIDNFDKALLTPSANSKNRK-NCNTLWLSQTDVLK 102
            MI LEK+VD FDMTYILDCVKENNLR DL NYRLG+SLFEEYDPYDILIGEKTW+D+KK  +I EE  ++DNFDKA+LTPSA+SKNRK N       Q D+LK
Sbjct:   71 MIALEKEVDIFDMTYILDCVKENNLRTDLGNYRLGISLFEEYDPYDILIGEKTWMDIKKLNDIGEECSQLDNFDKAVLTPSASSKNRKINRPYSHDEQVDILK 173          

HSP 2 Score: 89.7373 bits (221), Expect = 5.089e-21
Identity = 53/73 (72.60%), Postives = 57/73 (78.08%), Query Frame = 0
Query:   92 TLWLSQTDVLKSKEHEAFSKTCMLQSLNYSSQTKFLATWNLRQKDSSKEPEKKERSSDSYSLSKCNNSWYTND 164
             L LSQTD LKSKEHEAF+KT M QSLNYSSQTKFLATWN  QKD S+EPE+KE SSD  S S+ NNS  T D
Sbjct:  467 ALGLSQTDPLKSKEHEAFTKTRMSQSLNYSSQTKFLATWNPGQKDDSQEPEEKEHSSDLDSSSESNNSRDTED 539          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000138 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000138 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 5
Match NameE-valueIdentityDescription
gi|592866340|gb|GAXK01091222.1|2.699e-1041.10TSA: Calanus finmarchicus comp261078_c2_seq3 trans... [more]
gi|592866341|gb|GAXK01091221.1|5.381e-1034.48TSA: Calanus finmarchicus comp261078_c2_seq2 trans... [more]
gi|592851079|gb|GAXK01106465.1|1.899e-742.42TSA: Calanus finmarchicus comp119958_c6_seq2 trans... [more]
gi|592851080|gb|GAXK01106464.1|1.901e-742.42TSA: Calanus finmarchicus comp119958_c6_seq1 trans... [more]
gi|592814783|gb|GAXK01139785.1|3.314e+032.08TSA: Calanus finmarchicus comp2411692_c0_seq1 tran... [more]
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BLAST of EMLSAG00000000138 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 3
Match NameE-valueIdentityDescription
EMLSAP000000001382.373e-118100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1021:425:... [more]
EMLSAP000000052532.496e-5788.24pep:novel supercontig:LSalAtl2s:LSalAtl2s2800:1463... [more]
EMLSAP000000053712.145e-4272.82pep:novel supercontig:LSalAtl2s:LSalAtl2s28:125235... [more]
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BLAST of EMLSAG00000000138 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000138 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000138 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000138 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1021supercontigLSalAtl2s1021:425..1572 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1021-snap-gene-0.40
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000138 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000138EMLSAT00000000138-695985Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1021:425..1572-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000138-682904 ID=EMLSAG00000000138-682904|Name=EMLSAG00000000138|organism=Lepeophtheirus salmonis|type=gene|length=1148bp|location=Sequence derived from alignment at LSalAtl2s1021:425..1572- (Lepeophtheirus salmonis)
ATGATTAACCTTGAAAAAGACGTGGATAATTTTGACATGACTTACATCCT GGACTGTGTCAAGGGTAAGTTCCGAACTCCACTTGCATTTTTGTCCTCAA TCCTGGAGTTATTATACTTAATTATTAATGAATACATATCTGATATCTAT CATTTTTTACAGAGAACAATCTACGCAATGATCTCTGCAATTATCGACTT GGAGTCTCTCTTTTCGAGGAATACGACCCTTACGACATTCTAATTGGCGA AAAGACTTGGATTGATCTTAAGAAACGAAAAAATATCGAAGAGGAATACA TGGAAATAGATAACTTTGACAAAGCTCTCCTCACTCCCTCTGCTAATTCC AAAAATCGTAAAAGTAATTCTTATGATGGACAAGTTCRTATACTCAAATA CATCATTACTCATGGAAAATACAATTCACTTAAAGATATCAACACTTTGA GAAGAATGAAAGTTGGTGGAGTATGTTCAGGATTGAGAACAGCCATTTCT TTAAAAGAGCATTTTAGAAAACAAATCCTCCCTCACATCAATATTAAAAC ATACACCCAATTTAGTGAAGAGGATTTGAATAAAATTCTTAGAGGTTGGA AAGGCTCTAAGACTTCGTTTAATGTTGAGGTTTTAGAAAGAAGTTCTAGG CTTAAACAAAACGTTCCTTGTTCTGATGATGCTRCAATGCATAAACAGGC CAATGTGAAAATCGAAAACTCTGTTGGATCTCTTCAAAAAAGTTCTCGAA AGCTGATTAACAAAGATAAAACTCACTTTGATGAATCATTTGGAATACTC AACAAAAAAGAAGAAGTAACTGCTATCCCATCATATAAGCGGATAAAGAT ATGTAATTTGAATAAACTTGAAGCTTCATCCACTCCTATACAGAAATATT TTGTCAAAGAATCTCAAGATTGCAATACTCTATGGTTATCCCAAACGGAT GTTTTGAAATCAAAGGAGCACGAGGCCTTTAGTAAAACTTGTATGTTGCA GAGTCTTAATTATTCGTCTCAAACAAAGTTTTTAGCTACATGGAACCTCA GACAAAAAGATAGTAGTAAAGAACCCGAAAAAAAAGAGCGTTCTTCAGAC AGTTATTCTTTATCTAAATGTAATAATTCCTGGTATACGAATGATCCA
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