EMLSAG00000006512, EMLSAG00000006512-689278 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000006512
Unique NameEMLSAG00000006512-689278
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000006512 vs. L. salmonis peptides
Match: EMLSAP00000006512 (pep:novel supercontig:LSalAtl2s:LSalAtl2s3572:870:5607:-1 gene:EMLSAG00000006512 transcript:EMLSAT00000006512 description:"maker-LSalAtl2s3572-snap-gene-0.3")

HSP 1 Score: 397.127 bits (1019), Expect = 3.340e-141
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0 
Query:    1 ASLRGVVIQRGRRAGYPLAAALSVSQRSAAAAAALANAVAASNSSQTRNVAPGGSNHGSLLVTSASSPSSNAAAVVAAAAAAARNXXVGSXAASHTVNSILTPIAAALHGLPGVYSYDPFMANPLAQVQANGLAAAVDPRLQNLAANGLSAAVRQGFPTXATLPAGISAASLSLQAAVANQAAYANTIPGLARDPTTAALTDPYLTQSIGPMPGYGTV 218
            ASLRGVVIQRGRRAGYPLAAALSVSQRSAAAAAALANAVAASNSSQTRNVAPGGSNHGSLLVTSASSPSSNAAAVVAAAAAAARNXXVGSXAASHTVNSILTPIAAALHGLPGVYSYDPFMANPLAQVQANGLAAAVDPRLQNLAANGLSAAVRQGFPTXATLPAGISAASLSLQAAVANQAAYANTIPGLARDPTTAALTDPYLTQSIGPMPGYGTV
Sbjct:    1 ASLRGVVIQRGRRAGYPLAAALSVSQRSAAAAAALANAVAASNSSQTRNVAPGGSNHGSLLVTSASSPSSNAAAVVAAAAAAARNXXVGSXAASHTVNSILTPIAAALHGLPGVYSYDPFMANPLAQVQANGLAAAVDPRLQNLAANGLSAAVRQGFPTXATLPAGISAASLSLQAAVANQAAYANTIPGLARDPTTAALTDPYLTQSIGPMPGYGTV 218
[Close]
BLAST of EMLSAG00000006512 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold75_size407189-snap-gene-0.13 (protein:Tk10119 transcript:maker-scaffold75_size407189-snap-gene-0.13-mRNA-1 annotation:"rna binding protein fox-1 homolog 3 isoform x2")

HSP 1 Score: 99.7525 bits (247), Expect = 2.927e-25
Identity = 66/113 (58.41%), Postives = 77/113 (68.14%), Query Frame = 0 
Query:  112 PGVYS-YDPFMANPLAQVQANGLAAAVDPRLQNLAANGLSAAVRQGFPTXATLPAGIS--AASLSLQAAVANQAAYA----NTIP-GLARDPTTAALTDPYLTQSIGPMPGYG 216
            P +Y+ YDPF+AN LAQ+QANGL    DPRLQNLAA   S  V  G        AG+S  AA+LSLQAA+ NQ+A+A      +P  LARDPT AAL DPYL QSIGP+PGYG
Sbjct:  205 PALYNPYDPFLANSLAQLQANGLTGINDPRLQNLAALASSGLVGTGGGGVRQGFAGLSPAAANLSLQAALVNQSAHAAYGGGGLPAALARDPTAAALADPYLGQSIGPVPGYG 317
The following BLAST results are available for this feature:
BLAST of EMLSAG00000006512 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000006512 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000006512 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000065123.340e-141100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s3572:870:... [more]
back to top
BLAST of EMLSAG00000006512 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000006512 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000006512 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000006512 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold75_size407189-snap-gene-0.132.927e-2558.41protein:Tk10119 transcript:maker-scaffold75_size40... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s3572supercontigLSalAtl2s3572:870..5607 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s3572-snap-gene-0.3
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000006512 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000006512EMLSAT00000006512-702359Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s3572:870..5607-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000006512-689278 ID=EMLSAG00000006512-689278|Name=EMLSAG00000006512|organism=Lepeophtheirus salmonis|type=gene|length=4738bp|location=Sequence derived from alignment at LSalAtl2s3572:870..5607- (Lepeophtheirus salmonis)
GCATCCTTGCGTGGAGTAGTTATACAACGAGGCCGTAGGGCTGGTTATCC
ACTAGCAGCGGCATTGAGTGTTTCTCAACGAAGTGCTGCTGCTGCAGCGG
CTCTTGCTAATGCTGTGGCTGCTTCAAATTCCTCGCAGACTCGGAATGTA
GCCCCTGGTGGAAGTAATCACGGATCTCTCCTTGTTACTTCTGCCAGCTC
TCCATCATCAAATGCCGCAGCAGTTGTTGCAGCTGCCGCTGCCGCYGCYC
GCAACRGCGKGGTTGGKAGCYCAGCCGCCTCTCATACTGTCAACAGCATT
TTAACACCAATAGCTGCTGCCCTGCATGGGTTACCGTAAGTTGTGTTTTG
TTTTTGTTGTTTGATCTCTTATCTTTTTAAATACATAATACCCTATTTCT
ATGCATCTTATCTTTTTCTCTCTCTATCTCTTTATTTGCTCTGCTGTGGA
CTCTTTATTTCTTATTTCTAAAATCATGCACTCAACCTCTCACTTCATTA
TATATTAGGCGAAGTAAAAAGTTCTGAGCGTTTTTCTCTAGATGTCTTTA
GTGAGCTATATCTCACGATTAATACATTGCATTTAAAAAAATTTAAAGTA
TGCTGAATGGTTAAGAGTACACTTAAAAAAAGTTAATCTACAGTTTTGTG
TCGGKGAAGCCAGTTGTGGRTTATGGCGTTCCAAAATGAAAGAATAACCG
AGAAAATTCGATACATTCTTTAGTATCAATACGACCAAGGTGAAAAGGTG
GAACAAGTTACCAAAAACTAATTAGTGCTGTTTATGGACCCAGTACAGTA
CCAAATGTAACAACAAAGTGGTGGTTCCACGATTCTGTTCTGGAAATGAT
AGATGAAACATCGGAAATGTCGATAAAATGAAGGAAATCCCTTCAAATTC
GAGAAAAAGTTATCAAATAAAACAGTTCATATTTGATCTAAATCGAATAA
TCCTAACTATGTTAATTTTATGTTCAAAAACATGCGGAAACACTCTCAAA
ACTTTTTAATTCCCCTATAATATAGAGTTAGATAAAGCACACTACTACGA
TTTCTCCATTCCATTTCTGCATGCCACTAAATTAATGTGAGACACTTTGG
TTCGAGTATTTTTTTCTTTTTCTTTGTACAAAGCACAATTTGAATGGCTT
TTGTTTATTTTTTGAGTGCACGATCAACATTCACCTTTTTGATATGAGCA
TGAAGTCTTGTAAACAATTTTTTAAATAATCTAACTGTAACTAACACAAC
CAAAATATTAAAAAAAAAAAAACCCTTGAACTTCTTCAAGTTCACTACAT
AATAAGGAAAAAATATATCCAGACAAAAAATTATTAAAAAGAAATATTGA
AAAAAAAATTTTTTTAATGTCCTTCAATGAAGTATTATTTATGTATCATT
TCTTCATTTTTAGTTATTCTTTCTTCCCAGCTTTAACTTTTTCTTTAAAA
TTATCATTATTCGTACTATTTTTTTGACACGTGTACTTAAATGGTTTACA
ACTTTTCTTTACTTTTTTTTTTAAATTTTCTTCAAAGTAAGAAAAAATAA
TAGTTAAAGTTTTAATAACCATTTATCTAGACTTGGGAAAAAATAAAGTT
TCTAGACAGGATTTTCGGAACTCTGTCAAACTTTATGATAATAAGAAATC
AGAGATGATTATGTGGGGGGATGAGAAAAATATTATATCAAATGCTGCAA
ATACTTTAGAGTGTCCTTTTTTATTAKTAGTTTTTTTTTTTATTAAACTA
AAATCTTTTTTTGCTGGAAGGCATTAAAATAATAATTTCTGAGTAACTTG
AGGTACATTATATTATTTTTGATATGATGCTAACAAAAATCCTAAAANNN
NNNNNNNNNNNNNNNNNNNTTAAACTAAAATCTTTTTTTGCTGGAAGGCA
TTAAAATAATAATTTCTGAGNAACTTGAGGTACATTATATTATTTTTGAT
ATGATGCTAACAAAAATCCTAAAAATAATTTCAAAAATCCATAGCTATTC
ACAGAAAGTTAATAATAATTGGGGAAATATTTGAATAATTAAATTAAATT
TCAAGTATTAAAATTTCTAGTAAAAAGCAAAAAAAAACCTTAGTTTGGGT
GGGGGCTGAATCCCCTCCAGCCCACTACCTGTGGACGCCCCTTTAGTTTT
ATACAAACTTGAATGAGGGACTTTTTGGTGATCGTCTCTGCTATTTTCTT
ATTATCTATACTATGATTTTTTAAGCAATATTTATTTCATACATATCTTC
TCACCTTTTTTTTATTATCTTCTTCCTTTTTCTTCAAGAATCTACATTCG
TATATTTCCATCATTATCATTTTTTTTAAATTAATGTTCTCTTTTTAGTG
GTGTTTACTCCTATGATCCATTTATGGCTAATCCTTTAGCACAGGTTCAA
GCCAATGGATTAGCCGCAGCAGTTGATCCACGACTACAAGTAAGTTCCCT
TTTCATAATTTTTTTCCAAGGTGGATATCTTCATATGCTTATTTTCCATT
TCAGAATTTAGCAGCTAACGGACTAAGTGCCGCTGTACGACAAGGTTTTC
CAACTSCTGCCACACTTCCTGCTGGTATTTCAGCTGCGAGTCTTTCATTA
CAAGCTGCAGTTGCGAATCAAGCAGCCTATGCCAACACAATCCCTGGGTA
TGGTATACTTATTCAATAATTATTTATTTATAAATGTTAGGTACAAGTTA
CAAGTCTCATATTGTGTTCTATAGATAAATCACATTATTTATTTTAATAG
CCAACAAGGAATCTATATTCTCATTACATATTTAGTACTTATTACCGAAT
GAAAAAAATCGTTCTATAATGTCCAATAGAATATATATTGATAAGTAATT
TCCATCGAAAAAGTCAACAAAGACACCCCATTAATATACAAACCTTTAAT
GTCAAAAAGCTTCATCTCATTTGTAGTTGCAAAATCTAAACTTGTACACA
AAATATAAATGTATACATATATGCAGTGATGCTTCGTTTTTCAAACTATT
GTGTATATAAACAAAAAAATCGAATCCAAATAATAACATCAAAAGACGAA
CAAACTGTCGCAGCTCGAATATTTTTCTCTTGGAATTGCCTCTATACCTG
TATTTATTTCAGCCTTTAATCATGAGGAAAATAGGGATTGTTATCCATTC
TCGAACAAATCGGTGTTTGTAGTCCTATTTTAAAGTTAATTTCAACAAGA
TTAATATTATATATAGATGTGTACCTGAGCTCTCTTAATCATTAATGTAG
CCGTCCTTAGCAGAAGCTTTTAAYCCCCGTTGGAAACCATAGCTTCCGCT
AAGGACGGCTACATTAATGATTAAGAGAATTCAGGTGCATATCTATATAT
AATATTAATTTTTTTTTAAATTAAATTATATCTTGATGATCTAGCTTCAA
AATAGGACCTTAAGCTTATATTCAGATTACATAAGAAAGAAGATGTATAG
TTACATGTTGCTATTTTGATCTGCCATGCTTAAAACACCCTTAATATCAT
CAAATTGCTAGGGATCATCCACTTTACGGCTTACAACGTTTGTAGATCAT
TAAAAAAGAGCAAAAGCCTTATAAATCATCCTTGCTCAGGATAGTTAATC
AAACTTGAGCCAGTGACCACAAAATTGTTGTAGTATCTAAAGGACAGAAA
TTGTGTTGAACTTAATCAACCTGAATTATGGTTAAGGATAAATTTTGTAA
TAAAGTGTACTACTAATTTTTAAAAGCCTAGTAGTTACGAAACAAATCAT
GTGTGAAATCCGAAGTATCACTGTAAATCATATTTACCATAATATTTCAT
AACTATTTATAATATATTCGTATATATCCTTTTCAGACTAGCTCGTGATC
CTACAACCGCAGCATTGACTGATCCATACTTGACTCAGAGTATCGGGCCA
ATGCCTGGRTATGGAGTAAGTAGAACACTTTTGTCTTTCTTTAAAAAAAA
TGCATTCTCATTGAATTCGTTATCTCTAGGCTGCACTGTACCGGAGTTAT
CAACGCTTTGCTCCCTACTAATCYCCACTTCCCTTTCGCCCCMCYCCAAA
AAAAAGTGTCTAKTATCAATTTKTWTTCTTCAAAAAAAAAAAAAAACGAA
ACAAAAAAGTAAAAAAGACATCCCGCCAAAAATATTGAATATATCTAAAT
ACTTAACTTATTCTATCTTCTCTATTCTCTAAAATAATACAAAATATACT
ATATATATCTATGTATATATACAAAAATAGAACTAAACAGTTTTCCGATG
TTCACATTTTGTTTATGTATTATATNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNATCTATAGAATAATAATTATTTAGTTAATAACTTTTTACTTTAT
TTATTATATATATATATATATACATATATAAACATGTTATGATGAATTTA
GAAATTAACATCTAGCAACAGCAAAGTAAAGAATCTTGAGCCCACCAATT
AGCCACAATAAGTACTTTTAGACACAAAAAAATAGTTAAAAAATATTTTT
CTTTCGTTGTTAGATGGGCAAAAGTATTTTGACATCATTTTGATCATAAT
ATCTTATGATCTTTTTTATTTTTTTGTTTAAGACTGTG
back to top
Add to Basket