EMLSAG00000007720, EMLSAG00000007720-690486 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000007720
Unique NameEMLSAG00000007720-690486
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000007720 vs. C. finmarchicus
Match: gi|592839850|gb|GAXK01117694.1| (TSA: Calanus finmarchicus comp1982812_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 9.460e+0
Identity = 11/21 (52.38%), Postives = 16/21 (76.19%), Query Frame = 0 
Query:  178 SCSEFEFTFDIPHEVHVDFAI 198
            SCS F+FTFD P  +H++F +
Sbjct:  472 SCSNFQFTFDHPVYLHINFVL 534
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BLAST of EMLSAG00000007720 vs. L. salmonis peptides
Match: EMLSAP00000007720 (pep:novel supercontig:LSalAtl2s:LSalAtl2s44:1523368:1524572:-1 gene:EMLSAG00000007720 transcript:EMLSAT00000007720 description:"augustus_masked-LSalAtl2s44-processed-gene-14.3")

HSP 1 Score: 517.694 bits (1332), Expect = 0.000e+0
Identity = 254/254 (100.00%), Postives = 254/254 (100.00%), Query Frame = 0 
Query:    1 MRFNDGSYKRDLEHELLNLTPRKRLNTDAVPSLLLPTPTVPKPEEGNEEAEQTNGNQIKELEQKNKDIGIHTEHSLFLENTDNLKAELKKTKADLWKQKVKVNILTKKLERLEAKENKHSKIVRTLHDSLEGEIRVNCDGIEIEKEYDIYRIEDEEEKESVTRQITGDILDITIGEESCSEFEFTFDIPHEVHVDFAINYPLDQFKKWDLNIQGLSYGSSFIAHKMKLLYPDLGKKTSDIYLNEHGYIICLEED 254
            MRFNDGSYKRDLEHELLNLTPRKRLNTDAVPSLLLPTPTVPKPEEGNEEAEQTNGNQIKELEQKNKDIGIHTEHSLFLENTDNLKAELKKTKADLWKQKVKVNILTKKLERLEAKENKHSKIVRTLHDSLEGEIRVNCDGIEIEKEYDIYRIEDEEEKESVTRQITGDILDITIGEESCSEFEFTFDIPHEVHVDFAINYPLDQFKKWDLNIQGLSYGSSFIAHKMKLLYPDLGKKTSDIYLNEHGYIICLEED
Sbjct:    1 MRFNDGSYKRDLEHELLNLTPRKRLNTDAVPSLLLPTPTVPKPEEGNEEAEQTNGNQIKELEQKNKDIGIHTEHSLFLENTDNLKAELKKTKADLWKQKVKVNILTKKLERLEAKENKHSKIVRTLHDSLEGEIRVNCDGIEIEKEYDIYRIEDEEEKESVTRQITGDILDITIGEESCSEFEFTFDIPHEVHVDFAINYPLDQFKKWDLNIQGLSYGSSFIAHKMKLLYPDLGKKTSDIYLNEHGYIICLEED 254
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BLAST of EMLSAG00000007720 vs. L. salmonis peptides
Match: EMLSAP00000008926 (pep:novel supercontig:LSalAtl2s:LSalAtl2s555:158054:228428:1 gene:EMLSAG00000008926 transcript:EMLSAT00000008926 description:"maker-LSalAtl2s555-augustus-gene-1.35")

HSP 1 Score: 176.407 bits (446), Expect = 7.778e-51
Identity = 103/168 (61.31%), Postives = 109/168 (64.88%), Query Frame = 0 
Query:    1 MRFNDGSYKRDLEHELLNLTPRKRLNTDAVPSLLLPTPTVPKPEEGNEEAEQTN-------------GNQ----------------------------IKELEQKNKDIGIHTEHSLFLENTDNLKAELKKTKADLWKQKVKVNILTKKLERLEAKENKHSKIVRTLH 127
            M FNDGSY+RDLEHELLNLTPRKRLNTD VPSLLLPTPTVPKPE+  ++    N              NQ                            IKE EQKNKDI I TEHSLFLEN DNLK ELKKTKADL KQKVKVNILTKKLERLEA E KHSKI++ LH
Sbjct:  198 MHFNDGSYRRDLEHELLNLTPRKRLNTDTVPSLLLPTPTVPKPEDQCDKKFPKNLHSSTSSQTPSSVDNQAEDQVDIVSPRSMREIRRQNKQMVTNLLIKEPEQKNKDIVIQTEHSLFLENNDNLKGELKKTKADLCKQKVKVNILTKKLERLEATEKKHSKILKPLH 365

HSP 2 Score: 172.555 bits (436), Expect = 1.991e-49
Identity = 90/107 (84.11%), Postives = 95/107 (88.79%), Query Frame = 0 
Query:  140 GIEIEKEYDIYRIEDEEEKESVTRQITGDILDITIGEESCSEFEFTFDIPHEVHVDFAINYPLDQFKKWDLNIQGLSYGSSFIAHKMKLLYPDLGKKTSDIYLNEHG 246
             + IEKEYDI RIE+EEEKESVT+QITGDILDITIGEES SEFEFTFDI HEVHVD AIN+ LDQ KKWDLN QGLSY S  IAHKMKLLYPDLGKKTSDIYLN+HG
Sbjct:  459 AVLIEKEYDICRIEEEEEKESVTKQITGDILDITIGEESYSEFEFTFDISHEVHVDIAINHQLDQLKKWDLNFQGLSYESGVIAHKMKLLYPDLGKKTSDIYLNDHG 565
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BLAST of EMLSAG00000007720 vs. L. salmonis peptides
Match: EMLSAP00000008037 (pep:novel supercontig:LSalAtl2s:LSalAtl2s478:610788:619728:-1 gene:EMLSAG00000008037 transcript:EMLSAT00000008037 description:"snap_masked-LSalAtl2s478-processed-gene-6.9")

HSP 1 Score: 73.559 bits (179), Expect = 3.759e-17
Identity = 39/49 (79.59%), Postives = 40/49 (81.63%), Query Frame = 0 
Query:   58 IKELEQKNKDIGIHTEHSLFLENTDNLKAELKKTKADLWKQKVKVNILT 106
            + E EQKNKDIGI TEHSLFLENTDNLKAELKKTK DL KQKVK   L 
Sbjct:   11 VSEPEQKNKDIGIQTEHSLFLENTDNLKAELKKTKEDLCKQKVKTRGLA 59
The following BLAST results are available for this feature:
BLAST of EMLSAG00000007720 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007720 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592839850|gb|GAXK01117694.1|9.460e+052.38TSA: Calanus finmarchicus comp1982812_c0_seq1 tran... [more]
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BLAST of EMLSAG00000007720 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 3
Match NameE-valueIdentityDescription
EMLSAP000000077200.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s44:152336... [more]
EMLSAP000000089267.778e-5161.31pep:novel supercontig:LSalAtl2s:LSalAtl2s555:15805... [more]
EMLSAP000000080373.759e-1779.59pep:novel supercontig:LSalAtl2s:LSalAtl2s478:61078... [more]
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BLAST of EMLSAG00000007720 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007720 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007720 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007720 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s44supercontigLSalAtl2s44:1523368..1524572 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s44-processed-gene-14.3
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000007720 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000007720EMLSAT00000007720-703567Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s44:1523368..1524572-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000007720-690486 ID=EMLSAG00000007720-690486|Name=EMLSAG00000007720|organism=Lepeophtheirus salmonis|type=gene|length=1205bp|location=Sequence derived from alignment at LSalAtl2s44:1523368..1524572- (Lepeophtheirus salmonis)
ATGCGCTTTAATGATGGAAGCTACAAGAGGGACCTGGAACATGAGCTTCT
TAATTTGACTCCCAGAAAGAGGCTAAACACAGATGCGGTACCAAGTCTGC
TACTTCCTACTCCCACTGTTCCTAAGCCTGAGGTTCAATGTGATAAAAAG
TTCCCAAAAAGTTACATGAATCAACATTCTCTCAAACTCNNNNCACTGTT
CCTAAGCCTGAGGTTCAATGTGATAAAAAGTTCCCAAAAAGTTACATGAA
TCAACATTCTCTCAAACTCCCCCCAGCAGTGTCGATAATCAAGGTGAAGA
CCAAGTAGATTTTGTTTCACCTCGTTCCAGGAGGGAAATGAGGAGGCAGA
ACAAACAAATGGTAACCAAATAAAGGAACTGGAGCAAAAGAATAAGGATA
TTGGGATACATACAGAACATTCCCTTTTTCTGGAAAATACTGATAATCTC
AAAGCAGAATTAAAGAAAACGAAAGCAGATTTATGGAAACAAAAAGTCAA
GGTAAACATTCTCACAAAGAAACTCGAGCGACTTGAAGCGAAGGAAAATA
AACACTCCAAAATTGTAAGGACTCTTCATGATTCATTGGAAGGGGAAATA
AGAGTGAATTGCGATGGTATAGAGGTATACAAGTTTCAATCAAATCAACT
CMAGCTTTGTACCATGATTTGATTTCTAATGGTCCTCTTTCTTTCATTTT
GATGTCCAGAACTAATCAAGATTGCCTTGAAATTTTTTTTTTACCCGTTT
GAGAAGTGCTGGTGGTGATAATGCTCKCCTTGGAGCCGTTGGAGCAATGA
AAAGGATGAGAATTCTGGAAATTGGGAAAAAAATGTGAAACTTTGGTAAA
CAATCCGGCTGTTCAGATTGAAAAAGAATATGACATTTATAGAATTGAGG
ATGAAGAGGAAAAAGAATCTGTAACAAGGCAGATCACTGGAGACATCTTA
GATATCACAATTGGTGAAGAAAGCTGTTCAGAATTTGAATTTACGTTTGA
TATCCCTCATGAAGTTCATGTGGATTTTGCAATAAACTATCCACTTGATC
AGTTCAAAAAATGGGATCTCAACATTCAGGGGCTCAGTTATGGATCTAGT
TTTATTGCCCATAAGATGAAACTTTTATATCCGGATTTGGGGAAGAAGAC
AAGTGACATATATTTGAATGAACATGGATATATCATTTGTCTAGAGGAGG
ACTGA
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