EMLSAG00000012196, EMLSAG00000012196-694962 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000012196
Unique NameEMLSAG00000012196-694962
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000012196 vs. GO
Match: - (symbol:Rpb11 "Rpb11" species:7227 "Drosophila melanogaster" [GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS;NAS] [GO:0005665 "DNA-directed RNA polymerase II, core complex" evidence=ISS] [GO:0005634 "nucleus" evidence=NAS] [GO:0006351 "transcription, DNA-templated" evidence=NAS] [GO:0046983 "protein dimerization activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154 EMBL:AE014134 GO:GO:0003677 GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 SUPFAM:SSF55257 eggNOG:COG1761 GeneTree:ENSGT00550000074975 KO:K03008 OrthoDB:EOG7GN2P7 OMA:EHKILLR RefSeq:NP_609836.1 UniGene:Dm.12029 ProteinModelPortal:Q9VJE4 SMR:Q9VJE4 BioGrid:61039 DIP:DIP-20854N IntAct:Q9VJE4 MINT:MINT-877703 PaxDb:Q9VJE4 PRIDE:Q9VJE4 EnsemblMetazoa:FBtr0081011 GeneID:35043 KEGG:dme:Dmel_CG6840 UCSC:CG6840-RA CTD:35043 FlyBase:FBgn0032634 InParanoid:Q9VJE4 PhylomeDB:Q9VJE4 GenomeRNAi:35043 NextBio:791526 PRO:PR:Q9VJE4 Bgee:Q9VJE4 Uniprot:Q9VJE4)

HSP 1 Score: 189.119 bits (479), Expect = 5.330e-61
Identity = 88/117 (75.21%), Postives = 105/117 (89.74%), Query Frame = 0
Query:    1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117
            MNAPPTFESFLL++GEKKI KE DTKV NA+IFTINKEDHTLGN++R+QLLKDPNVLF GYK PHPLE+K ++RIQTT+DY+P +A MNAITDL++ELSLFEE FKDA++EK +  D
Sbjct:    1 MNAPPTFESFLLYEGEKKIIKELDTKVTNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKVPHPLEHKFVIRIQTTADYSPQEAFMNAITDLLAELSLFEERFKDAIKEKKEGGD 117          
BLAST of EMLSAG00000012196 vs. GO
Match: - (symbol:Polr2j "polymerase (RNA) II (DNA directed) polypeptide J" species:10090 "Mus musculus" [GO:0001055 "RNA polymerase II activity" evidence=IBA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005665 "DNA-directed RNA polymerase II, core complex" evidence=ISO;IDA] [GO:0006351 "transcription, DNA-templated" evidence=IEA] [GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISO] [GO:0030275 "LRR domain binding" evidence=ISO] [GO:0046983 "protein dimerization activity" evidence=IEA] InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154 MGI:MGI:109582 GO:GO:0003677 GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 SUPFAM:SSF55257 eggNOG:COG1761 HOGENOM:HOG000179862 HOVERGEN:HBG073419 ChiTaRS:POLR2J EMBL:D85818 UniGene:Mm.4896 ProteinModelPortal:O08740 SMR:O08740 IntAct:O08740 MINT:MINT-4133029 PhosphoSite:O08740 PaxDb:O08740 PRIDE:O08740 InParanoid:O08740 PRO:PR:O08740 CleanEx:MM_POLR2J Genevestigator:O08740 Uniprot:O08740)

HSP 1 Score: 177.178 bits (448), Expect = 2.381e-56
Identity = 82/117 (70.09%), Postives = 99/117 (84.62%), Query Frame = 0
Query:    1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117
            MNAPP FESFLLF+GEKKIT  +DTKVPNA +FTINKEDHTLGN+++ QLLKDP VLF GYK PHPLE+KII+R+QTT DY+P +A  NAITDLISELSL EE F+ A+++K +  +
Sbjct:    1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRGAIKDKQEGIE 117          
BLAST of EMLSAG00000012196 vs. GO
Match: - (symbol:Polr2j "polymerase (RNA) II (DNA directed) polypeptide J" species:10116 "Rattus norvegicus" [GO:0001055 "RNA polymerase II activity" evidence=IBA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005665 "DNA-directed RNA polymerase II, core complex" evidence=ISO;IBA] [GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISO] [GO:0030275 "LRR domain binding" evidence=IEA;ISO] [GO:0046983 "protein dimerization activity" evidence=IEA] InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154 RGD:1310198 GO:GO:0003677 GO:GO:0006366 EMBL:CH473973 GO:GO:0003899 GO:GO:0005665 SUPFAM:SSF55257 CTD:5439 GeneTree:ENSGT00550000074975 KO:K03008 OMA:FAAYKVE OrthoDB:EOG7GN2P7 TreeFam:TF103044 EMBL:AABR06071155 RefSeq:NP_001099391.1 UniGene:Rn.816 Ensembl:ENSRNOT00000001941 GeneID:288588 KEGG:rno:288588 UCSC:RGD:1310198 NextBio:628366 PRO:PR:D3ZQI0 Uniprot:D3ZQI0)

HSP 1 Score: 176.792 bits (447), Expect = 4.673e-56
Identity = 82/117 (70.09%), Postives = 99/117 (84.62%), Query Frame = 0
Query:    1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117
            MNAPP FESFLLF+GEKKIT  +DTKVPNA +FTINKEDHTLGN+++ QLLKDP VLF GYK PHPLE+KII+R+QTT DY+P +A  NAITDLISELSL EE F+ A+++K +  +
Sbjct:    1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE 117          
BLAST of EMLSAG00000012196 vs. GO
Match: - (symbol:POLR2J "DNA-directed RNA polymerase II subunit RPB11-a" species:9606 "Homo sapiens" [GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005665 "DNA-directed RNA polymerase II, core complex" evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006283 "transcription-coupled nucleotide-excision repair" evidence=TAS] [GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006366 "transcription from RNA polymerase II promoter" evidence=IDA;TAS] [GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=TAS] [GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=TAS] [GO:0006370 "7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS] [GO:0016032 "viral process" evidence=TAS] [GO:0030275 "LRR domain binding" evidence=IPI] [GO:0046983 "protein dimerization activity" evidence=IEA] [GO:0050434 "positive regulation of viral transcription" evidence=TAS] [GO:0001055 "RNA polymerase II activity" evidence=IBA] Reactome:REACT_216 Reactome:REACT_71 InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154 Reactome:REACT_116125 GO:GO:0016032 GO:GO:0003677 GO:GO:0006368 EMBL:AC093668 GO:GO:0006367 GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006370 GO:GO:0050434 GO:GO:0006283 Reactome:REACT_1892 GO:GO:0003899 GO:GO:0005665 SUPFAM:SSF55257 eggNOG:COG1761 HOGENOM:HOG000179862 CTD:5439 HOVERGEN:HBG073419 KO:K03008 OrthoDB:EOG7GN2P7 TreeFam:TF103044 EMBL:X82385 EMBL:L37127 EMBL:X98433 EMBL:AK290515 EMBL:BC024165 EMBL:BC065711 EMBL:BC139902 EMBL:BC141830 PIR:S71325 RefSeq:NP_006225.1 UniGene:Hs.654952 ProteinModelPortal:P52435 SMR:P52435 BioGrid:111435 DIP:DIP-32913N IntAct:P52435 MINT:MINT-131416 STRING:9606.ENSP00000292614 PhosphoSite:P52435 DMDM:1710661 PaxDb:P52435 PRIDE:P52435 DNASU:5439 Ensembl:ENST00000292614 GeneID:5439 KEGG:hsa:5439 UCSC:uc003uzp.1 GeneCards:GC07M102113 H-InvDB:HIX0025314 HGNC:HGNC:9197 HPA:HPA044010 HPA:HPA046970 MIM:604150 neXtProt:NX_P52435 PharmGKB:PA33517 ChiTaRS:POLR2J GeneWiki:POLR2J GenomeRNAi:5439 NextBio:21045 PRO:PR:P52435 ArrayExpress:P52435 Bgee:P52435 CleanEx:HS_POLR2J Genevestigator:P52435 Uniprot:P52435)

HSP 1 Score: 176.792 bits (447), Expect = 4.673e-56
Identity = 82/117 (70.09%), Postives = 99/117 (84.62%), Query Frame = 0
Query:    1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117
            MNAPP FESFLLF+GEKKIT  +DTKVPNA +FTINKEDHTLGN+++ QLLKDP VLF GYK PHPLE+KII+R+QTT DY+P +A  NAITDLISELSL EE F+ A+++K +  +
Sbjct:    1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE 117          
BLAST of EMLSAG00000012196 vs. GO
Match: - (symbol:LOC100686835 "Uncharacterized protein" species:9615 "Canis lupus familiaris" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription, DNA-templated" evidence=IEA] [GO:0046983 "protein dimerization activity" evidence=IEA] InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 SUPFAM:SSF55257 GeneTree:ENSGT00550000074975 EMBL:AAEX03004255 ProteinModelPortal:E2RD80 SMR:E2RD80 Ensembl:ENSCAFT00000038247 Uniprot:E2RD80)

HSP 1 Score: 176.792 bits (447), Expect = 4.673e-56
Identity = 82/117 (70.09%), Postives = 99/117 (84.62%), Query Frame = 0
Query:    1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117
            MNAPP FESFLLF+GEKKIT  +DTKVPNA +FTINKEDHTLGN+++ QLLKDP VLF GYK PHPLE+KII+R+QTT DY+P +A  NAITDLISELSL EE F+ A+++K +  +
Sbjct:    1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE 117          
BLAST of EMLSAG00000012196 vs. GO
Match: - (symbol:POLR2J "DNA-directed RNA polymerase II subunit RPB11" species:9913 "Bos taurus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase II, core complex" evidence=ISS;IBA] [GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISS] [GO:0046983 "protein dimerization activity" evidence=IEA] [GO:0001055 "RNA polymerase II activity" evidence=IBA] InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154 GO:GO:0003677 GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 SUPFAM:SSF55257 eggNOG:COG1761 HOGENOM:HOG000179862 EMBL:BC108226 RefSeq:NP_001032560.1 UniGene:Bt.748 ProteinModelPortal:Q32P79 SMR:Q32P79 STRING:9913.ENSBTAP00000007165 Ensembl:ENSBTAT00000007165 GeneID:540428 KEGG:bta:540428 CTD:5439 GeneTree:ENSGT00550000074975 HOVERGEN:HBG073419 InParanoid:Q32P79 KO:K03008 OMA:FAAYKVE OrthoDB:EOG7GN2P7 TreeFam:TF103044 NextBio:20878632 Uniprot:Q32P79)

HSP 1 Score: 176.792 bits (447), Expect = 4.673e-56
Identity = 82/117 (70.09%), Postives = 99/117 (84.62%), Query Frame = 0
Query:    1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117
            MNAPP FESFLLF+GEKKIT  +DTKVPNA +FTINKEDHTLGN+++ QLLKDP VLF GYK PHPLE+KII+R+QTT DY+P +A  NAITDLISELSL EE F+ A+++K +  +
Sbjct:    1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE 117          
BLAST of EMLSAG00000012196 vs. GO
Match: - (symbol:polr2j "polymerase (RNA) II (DNA directed) polypeptide J" species:7955 "Danio rerio" [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0046983 "protein dimerization activity" evidence=IEA] [GO:0006351 "transcription, DNA-templated" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core complex" evidence=IBA] [GO:0001055 "RNA polymerase II activity" evidence=IBA] InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154 ZFIN:ZDB-GENE-050522-120 GO:GO:0003677 GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 SUPFAM:SSF55257 eggNOG:COG1761 HOGENOM:HOG000179862 CTD:5439 GeneTree:ENSGT00550000074975 HOVERGEN:HBG073419 KO:K03008 OMA:FAAYKVE OrthoDB:EOG7GN2P7 TreeFam:TF103044 EMBL:BX294180 EMBL:BC095123 EMBL:BC165488 RefSeq:NP_001019571.1 UniGene:Dr.86671 STRING:7955.ENSDARP00000050901 Ensembl:ENSDART00000050902 GeneID:554099 KEGG:dre:554099 InParanoid:Q4VBU5 NextBio:20880666 PRO:PR:Q4VBU5 Uniprot:Q4VBU5)

HSP 1 Score: 176.022 bits (445), Expect = 8.407e-56
Identity = 80/114 (70.18%), Postives = 98/114 (85.96%), Query Frame = 0
Query:    1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKAD 114
            MNAPP FESFLLF+GEKKIT  +DTKVPNA +FT+NKEDHTLGN++R QLLKDP VLF GYK PHPLE+K+++R+QTT DY+P +A  NAITDLISELSL EE F+ A+++K +
Sbjct:    1 MNAPPAFESFLLFEGEKKITITKDTKVPNACLFTLNKEDHTLGNIIRSQLLKDPQVLFAGYKVPHPLEHKVVIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQE 114          
BLAST of EMLSAG00000012196 vs. GO
Match: - (symbol:F1NFM7 "Uncharacterized protein" species:9031 "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core complex" evidence=IBA] [GO:0006366 "transcription from RNA polymerase II promoter" evidence=IBA] [GO:0046983 "protein dimerization activity" evidence=IEA] [GO:0001055 "RNA polymerase II activity" evidence=IBA] InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154 GO:GO:0003677 GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 SUPFAM:SSF55257 GeneTree:ENSGT00550000074975 OrthoDB:EOG7GN2P7 TreeFam:TF103044 EMBL:AADN03007663 Ensembl:ENSGALT00000002880 Uniprot:F1NFM7)

HSP 1 Score: 175.637 bits (444), Expect = 1.056e-55
Identity = 81/117 (69.23%), Postives = 99/117 (84.62%), Query Frame = 0
Query:    1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117
            MNAPP FESFLLF+GEK+IT  +DTKVPNA +FTINKEDHTLGN+++ QLLKDP VLF GYK PHPLE+KII+R+QTT DY+P +A  NAITDLISELSL EE F+ A+++K +  +
Sbjct:    1 MNAPPAFESFLLFEGEKRITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE 117          
BLAST of EMLSAG00000012196 vs. GO
Match: - (symbol:LOC100686835 "Uncharacterized protein" species:9615 "Canis lupus familiaris" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core complex" evidence=IBA] [GO:0006366 "transcription from RNA polymerase II promoter" evidence=IBA] [GO:0046983 "protein dimerization activity" evidence=IEA] [GO:0001055 "RNA polymerase II activity" evidence=IBA] InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154 GO:GO:0003677 GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 SUPFAM:SSF55257 GeneTree:ENSGT00550000074975 OrthoDB:EOG7GN2P7 TreeFam:TF103044 OMA:EHKILLR EMBL:AAEX03004255 Ensembl:ENSCAFT00000021705 Uniprot:F1PXE5)

HSP 1 Score: 172.17 bits (435), Expect = 4.175e-54
Identity = 80/106 (75.47%), Postives = 92/106 (86.79%), Query Frame = 0
Query:    1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFK 106
            MNAPP FESFLLF+GEKKIT  +DTKVPNA +FTINKEDHTLGN+++ QLLKDP VLF GYK PHPLE+KII+R+QTT DY+P +A  NAITDLISELSL EE F+
Sbjct:   22 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFR 127          
BLAST of EMLSAG00000012196 vs. GO
Match: - (symbol:POLR2J1 "RPB11a protein" species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription, DNA-templated" evidence=IEA] [GO:0046983 "protein dimerization activity" evidence=IEA] InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154 GO:GO:0003677 GO:GO:0006351 EMBL:AC093668 GO:GO:0003899 SUPFAM:SSF55257 HOGENOM:HOG000179862 HOVERGEN:HBG073419 UniGene:Hs.654952 HGNC:HGNC:9197 ChiTaRS:POLR2J EMBL:AJ277932 EMBL:AJ277928 EMBL:AJ277929 EMBL:AJ277930 ProteinModelPortal:Q9H1A6 SMR:Q9H1A6 PRIDE:Q9H1A6 Ensembl:ENST00000393794 OMA:NTMANSS ArrayExpress:Q9H1A6 Uniprot:Q9H1A6)

HSP 1 Score: 171.785 bits (434), Expect = 5.224e-54
Identity = 80/106 (75.47%), Postives = 92/106 (86.79%), Query Frame = 0
Query:    1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFK 106
            MNAPP FESFLLF+GEKKIT  +DTKVPNA +FTINKEDHTLGN+++ QLLKDP VLF GYK PHPLE+KII+R+QTT DY+P +A  NAITDLISELSL EE F+
Sbjct:    1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFR 106          
BLAST of EMLSAG00000012196 vs. C. finmarchicus
Match: gi|592776197|gb|GAXK01178371.1| (TSA: Calanus finmarchicus comp14926_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 206.068 bits (523), Expect = 2.905e-67
Identity = 94/117 (80.34%), Postives = 108/117 (92.31%), Query Frame = 0
Query:    1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117
            MNAPPTFESFLLFDGEKKIT+EQDTKVPNA++FTINKEDHTLGN++R QLLKDPNVLF GYKNPHP+ENK++LRIQTTSDY P DALMN+ITDLISELSLFEE F++ +++K D  D
Sbjct:   35 MNAPPTFESFLLFDGEKKITREQDTKVPNAAVFTINKEDHTLGNMIRQQLLKDPNVLFAGYKNPHPMENKVVLRIQTTSDYAPNDALMNSITDLISELSLFEERFREGLKDKQDGID 385          
BLAST of EMLSAG00000012196 vs. C. finmarchicus
Match: gi|592802160|gb|GAXK01152408.1| (TSA: Calanus finmarchicus comp223114_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 191.43 bits (485), Expect = 2.222e-61
Identity = 89/109 (81.65%), Postives = 101/109 (92.66%), Query Frame = 0
Query:    1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAV 109
            MNAPPTFESFLLFDGEKKIT+EQDTKVPNA+IFT+NKEDHTLGN++RHQLLKDPNVLF GYKNP P  N+II+R+QTTSDYTP DA +NAITDL+SELSLFEE FK+ +
Sbjct:  137 MNAPPTFESFLLFDGEKKITREQDTKVPNAAIFTLNKEDHTLGNMIRHQLLKDPNVLFAGYKNPSPFVNQIIIRVQTTSDYTPNDAFINAITDLLSELSLFEERFKEQL 463          
BLAST of EMLSAG00000012196 vs. C. finmarchicus
Match: gi|592802159|gb|GAXK01152409.1| (TSA: Calanus finmarchicus comp223114_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 91.6633 bits (226), Expect = 1.531e-23
Identity = 42/57 (73.68%), Postives = 49/57 (85.96%), Query Frame = 0
Query:   53 DPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAV 109
            DPNVLF GYKNP P  N+II+R+QTTSDYTP DA +NAITDL+SELSLFEE FK+ +
Sbjct:  137 DPNVLFAGYKNPSPFVNQIIIRVQTTSDYTPNDAFINAITDLLSELSLFEERFKEQL 307          
BLAST of EMLSAG00000012196 vs. C. finmarchicus
Match: gi|592850880|gb|GAXK01106664.1| (TSA: Calanus finmarchicus comp36758_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 73.559 bits (179), Expect = 3.059e-16
Identity = 36/77 (46.75%), Postives = 49/77 (63.64%), Query Frame = 0
Query:   33 FTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAV 109
            F  ++E+HTLGN +RH LL +P V+F GY  PHP E+++ +RIQT  DY    AL  A+ DL S   L ++ F D V
Sbjct:  125 FIFHQENHTLGNSLRHMLLMNPRVVFAGYTIPHPAEDQMHIRIQTVEDYPAQTALKTALQDLKSLAVLSKQKFLDDV 355          
BLAST of EMLSAG00000012196 vs. C. finmarchicus
Match: gi|592838398|gb|GAXK01119146.1| (TSA: Calanus finmarchicus comp2021500_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 34.6538 bits (78), Expect = 1.428e-2
Identity = 24/67 (35.82%), Postives = 34/67 (50.75%), Query Frame = 0
Query:   43 GNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAV 109
            GN +RH LL +P V+  GY      ++ + L I    DY   +AL  A+ DL S   L ++ F D V
Sbjct:    1 GNSLRHMLLMNPRVVIAGYTIT---QD*MHLSI*MVEDYPAQNALKTALQDLKSMGELSKQKFLDDV 192          
BLAST of EMLSAG00000012196 vs. C. finmarchicus
Match: gi|592941868|gb|GAXK01016685.1| (TSA: Calanus finmarchicus comp283535_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 5.806e-1
Identity = 13/32 (40.62%), Postives = 20/32 (62.50%), Query Frame = 0
Query:   37 KEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLE 68
            KED  +  +++HQL+K PN+ +    N H LE
Sbjct: 4073 KEDMVVDGMIQHQLIKCPNITYRILLNKHLLE 4168          
BLAST of EMLSAG00000012196 vs. C. finmarchicus
Match: gi|592924437|gb|GAXK01033978.1| (TSA: Calanus finmarchicus comp7373046_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 7.433e-1
Identity = 24/80 (30.00%), Postives = 36/80 (45.00%), Query Frame = 0
Query:   15 GEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDL 94
             ++ I+K  +      SI       H+L  L RH  ++D + L TG  +P PL+ K    IQT     P+D     + DL
Sbjct:   92 SKRNISKSCERMNAQCSICDFETTSHSL--LKRH--MRDDHALTTGSTSP-PLKKKRTTSIQTVVSEDPMDIEETDVADL 316          
BLAST of EMLSAG00000012196 vs. L. salmonis peptides
Match: EMLSAP00000012196 (pep:novel supercontig:LSalAtl2s:LSalAtl2s881:209726:210574:1 gene:EMLSAG00000012196 transcript:EMLSAT00000012196 description:"maker-LSalAtl2s881-augustus-gene-1.33")

HSP 1 Score: 238.424 bits (607), Expect = 5.824e-82
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0
Query:    1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117
            MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD
Sbjct:    1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117          
BLAST of EMLSAG00000012196 vs. L. salmonis peptides
Match: EMLSAP00000008459 (pep:novel supercontig:LSalAtl2s:LSalAtl2s51:1311671:1338820:-1 gene:EMLSAG00000008459 transcript:EMLSAT00000008459 description:"maker-LSalAtl2s51-augustus-gene-13.14")

HSP 1 Score: 62.003 bits (149), Expect = 3.419e-12
Identity = 27/62 (43.55%), Postives = 40/62 (64.52%), Query Frame = 0
Query:   33 FTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDL 94
            F    E+HTLGN +R  +L++P V+F GY  PHP E++++LRIQT +     +AL   + DL
Sbjct:   24 FVFKGENHTLGNALRTVILQNPEVIFCGYSXPHPAEDQMLLRIQTVNSSPAQEALKKGLEDL 85          
BLAST of EMLSAG00000012196 vs. SwissProt
Match: gi|11387116|sp|Q9VJE4.1|RPB11_DROME (RecName: Full=DNA-directed RNA polymerase II subunit RPB11; Short=RNA polymerase II subunit B11; AltName: Full=DNA-directed RNA polymerase II 13.3 kDa polypeptide; AltName: Full=DNA-directed RNA polymerase II subunit J)

HSP 1 Score: 189.119 bits (479), Expect = 1.374e-62
Identity = 88/117 (75.21%), Postives = 105/117 (89.74%), Query Frame = 0
Query:    1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117
            MNAPPTFESFLL++GEKKI KE DTKV NA+IFTINKEDHTLGN++R+QLLKDPNVLF GYK PHPLE+K ++RIQTT+DY+P +A MNAITDL++ELSLFEE FKDA++EK +  D
Sbjct:    1 MNAPPTFESFLLYEGEKKIIKELDTKVTNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKVPHPLEHKFVIRIQTTADYSPQEAFMNAITDLLAELSLFEERFKDAIKEKKEGGD 117          
BLAST of EMLSAG00000012196 vs. SwissProt
Match: gi|74839219|sp|Q7PVQ9.2|RPB11_ANOGA (RecName: Full=DNA-directed RNA polymerase II subunit RPB11; Short=RNA polymerase II subunit B11; AltName: Full=DNA-directed RNA polymerase II subunit J)

HSP 1 Score: 187.963 bits (476), Expect = 4.115e-62
Identity = 87/117 (74.36%), Postives = 105/117 (89.74%), Query Frame = 0
Query:    1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117
            MNAPPTFESFLL++GEKKI KE D KVPNA+IFT+NKEDHTLGN++R+QLLKDPNVLF GYK PHPLE+K +LRIQTTS+Y+P +A MNAITDL+SELSLFEE F++A++EK +  D
Sbjct:    1 MNAPPTFESFLLYEGEKKIIKELDMKVPNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFVLRIQTTSEYSPHEAFMNAITDLLSELSLFEERFREAMKEKKEGGD 117          
BLAST of EMLSAG00000012196 vs. SwissProt
Match: gi|2500634|sp|O08740.1|RPB11_MOUSE (RecName: Full=DNA-directed RNA polymerase II subunit RPB11; Short=RNA polymerase II subunit B11; AltName: Full=DNA-directed RNA polymerase II subunit J; AltName: Full=RNA polymerase II 13.3 kDa subunit; AltName: Full=RPB14)

HSP 1 Score: 177.178 bits (448), Expect = 6.689e-58
Identity = 82/117 (70.09%), Postives = 99/117 (84.62%), Query Frame = 0
Query:    1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117
            MNAPP FESFLLF+GEKKIT  +DTKVPNA +FTINKEDHTLGN+++ QLLKDP VLF GYK PHPLE+KII+R+QTT DY+P +A  NAITDLISELSL EE F+ A+++K +  +
Sbjct:    1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRGAIKDKQEGIE 117          
BLAST of EMLSAG00000012196 vs. SwissProt
Match: gi|1710661|sp|P52435.1|RPB11_HUMAN (RecName: Full=DNA-directed RNA polymerase II subunit RPB11-a; Short=RNA polymerase II subunit B11-a; Short=RPB11a; AltName: Full=DNA-directed RNA polymerase II subunit J-1; AltName: Full=RNA polymerase II 13.3 kDa subunit >gi|116256059|sp|Q32P79.1|RPB11_BOVIN RecName: Full=DNA-directed RNA polymerase II subunit RPB11; Short=RNA polymerase II subunit B11; AltName: Full=DNA-directed RNA polymerase II subunit J)

HSP 1 Score: 176.792 bits (447), Expect = 1.320e-57
Identity = 82/117 (70.09%), Postives = 99/117 (84.62%), Query Frame = 0
Query:    1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117
            MNAPP FESFLLF+GEKKIT  +DTKVPNA +FTINKEDHTLGN+++ QLLKDP VLF GYK PHPLE+KII+R+QTT DY+P +A  NAITDLISELSL EE F+ A+++K +  +
Sbjct:    1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE 117          
BLAST of EMLSAG00000012196 vs. SwissProt
Match: gi|74725032|sp|Q9H1A7.1|RPB1C_HUMAN (RecName: Full=DNA-directed RNA polymerase II subunit RPB11-b2; Short=RNA polymerase II subunit B11-b2; Short=RPB11b2; AltName: Full=DNA-directed RNA polymerase II subunit J3)

HSP 1 Score: 164.081 bits (414), Expect = 1.111e-52
Identity = 78/109 (71.56%), Postives = 92/109 (84.40%), Query Frame = 0
Query:    1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAV 109
            MNAPP FESFLLF+GEK IT  +DTKVPNA +FT+NKEDHTLGN+++ QLLKDP VLF GYK PHPLE+KII+R+QTT DY+P +A  NAITDLISELSL EE F+  +
Sbjct:    1 MNAPPAFESFLLFEGEK-ITINKDTKVPNACLFTMNKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRTCL 108          
BLAST of EMLSAG00000012196 vs. SwissProt
Match: gi|613504330|sp|Q9GZM3.2|RPB1B_HUMAN (RecName: Full=DNA-directed RNA polymerase II subunit RPB11-b1; Short=RNA polymerase II subunit B11-b1; Short=RPB11b1; AltName: Full=DNA-directed RNA polymerase II subunit J2)

HSP 1 Score: 163.31 bits (412), Expect = 2.501e-52
Identity = 78/109 (71.56%), Postives = 91/109 (83.49%), Query Frame = 0
Query:    1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAV 109
            MNAPP FESFLLF+GEK IT  +DTKVP A +FTINKEDHTLGN+++ QLLKDP VLF GYK PHPLE+KII+R+QTT DY+P +A  NAITDLISELSL EE F+  +
Sbjct:    1 MNAPPAFESFLLFEGEK-ITINKDTKVPKACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRTCL 108          
BLAST of EMLSAG00000012196 vs. SwissProt
Match: gi|74845978|sp|Q60SM4.1|RPB11_CAEBR (RecName: Full=Probable DNA-directed RNA polymerase II subunit RPB11; Short=RNA polymerase II subunit B11; AltName: Full=DNA-directed RNA polymerase II subunit J)

HSP 1 Score: 155.606 bits (392), Expect = 2.905e-49
Identity = 77/117 (65.81%), Postives = 91/117 (77.78%), Query Frame = 0
Query:    1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117
            MNAP  FESFLL D +KKI  E+DTKVPNA+IFTINKEDHTLGN+++ QLLKDP VLF GYKNPHPLE+KI+LR+QTT+  TP DAL  AITDL+ ELSL E     A+++     D
Sbjct:    1 MNAPAAFESFLLLD-DKKIYIEKDTKVPNAAIFTINKEDHTLGNMLKIQLLKDPEVLFAGYKNPHPLEHKILLRVQTTNATTPADALTTAITDLVGELSLLEHRIDSAIKKCTQSTD 116          
BLAST of EMLSAG00000012196 vs. SwissProt
Match: gi|11387118|sp|Q9XVH6.1|RPB11_CAEEL (RecName: Full=Probable DNA-directed RNA polymerase II subunit RPB11; Short=RNA polymerase II subunit B11; AltName: Full=DNA-directed RNA polymerase II subunit J)

HSP 1 Score: 151.369 bits (381), Expect = 1.749e-47
Identity = 76/117 (64.96%), Postives = 90/117 (76.92%), Query Frame = 0
Query:    1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117
            MNAP  FESFLL D +KK   E+DTKVPNA+IFTI KEDHTLGN+++ QLLKDP VLF GYKNPHPLE+KI+LRIQTT++ TP DAL  AITDL+ ELSL E     A+++     D
Sbjct:    1 MNAPAAFESFLLLD-DKKFYIEKDTKVPNAAIFTIMKEDHTLGNMLKIQLLKDPEVLFAGYKNPHPLEHKILLRIQTTNNTTPADALTTAITDLVGELSLLEHRIDAAIKKCTQSGD 116          
BLAST of EMLSAG00000012196 vs. SwissProt
Match: gi|74861274|sp|Q86JJ5.1|RPB11_DICDI (RecName: Full=DNA-directed RNA polymerase II subunit rpb11; Short=RNA polymerase II subunit B11; AltName: Full=DNA-directed RNA polymerase II subunit J)

HSP 1 Score: 121.709 bits (304), Expect = 8.137e-36
Identity = 57/117 (48.72%), Postives = 83/117 (70.94%), Query Frame = 0
Query:    1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117
            MNAP  FE F+L DG KK+T  +DTK+PNAS+FTI KEDHT+GNL+R QL+ D +++F GY+ PHPLE+ + +RIQT ++  PL+ +  ++  L  E +  E SF + V++K +  D
Sbjct:    1 MNAPDRFELFVLPDGAKKVTMVRDTKIPNASMFTILKEDHTIGNLIRMQLIADQDIIFAGYRMPHPLEHNVNIRIQTNNNTNPLECVQKSMECLSREFTSLENSFIEQVQKKRNVAD 117          
BLAST of EMLSAG00000012196 vs. SwissProt
Match: gi|3219858|sp|Q38859.1|NRPBB_ARATH (RecName: Full=DNA-directed RNA polymerases II, IV and V subunit 11; AltName: Full=DNA-directed RNA polymerase II 13.6 kDa polypeptide; AltName: Full=DNA-directed RNA polymerase II subunit J; AltName: Full=DNA-directed RNA polymerase II subunit RPB11; Short=RNA polymerase II subunit B11)

HSP 1 Score: 119.398 bits (298), Expect = 5.063e-35
Identity = 56/116 (48.28%), Postives = 82/116 (70.69%), Query Frame = 0
Query:    1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRF 116
            MNAP  +E F++ +G KK++ ++DTK+ NA+ FT+ +EDHT+GN+VR QL +D NVLF GY+ PHPL+ KII+RI TTS  +P+ A   AI DL  EL   +  F+  V + +++F
Sbjct:    1 MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAKFSNQF 116          
BLAST of EMLSAG00000012196 vs. Select Arthropod Genomes
Match: gb|EFA10296.1| (DNA-directed RNA polymerase II subunit RPB11-like Protein [Tribolium castaneum])

HSP 1 Score: 199.904 bits (507), Expect = 3.355e-67
Identity = 93/117 (79.49%), Postives = 108/117 (92.31%), Query Frame = 0
Query:    1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117
            MNAPPTFESFLL+DGEKKI +EQDTKVPNA+IFTINKEDHTLGN++R+QLLKDPNVLF GYK PHPLE+K +LRIQTTSDY+P +ALMN+ITDLISELSLFEE FK+A++EK +  D
Sbjct:    1 MNAPPTFESFLLYDGEKKIIREQDTKVPNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKVPHPLEHKFVLRIQTTSDYSPQEALMNSITDLISELSLFEERFKEAIKEKKEGLD 117          
BLAST of EMLSAG00000012196 vs. Select Arthropod Genomes
Match: EEB10023.1 (DNA-directed RNA polymerase II subunit J, putative [Pediculus humanus corporis])

HSP 1 Score: 199.134 bits (505), Expect = 8.810e-67
Identity = 95/117 (81.20%), Postives = 105/117 (89.74%), Query Frame = 0
Query:    1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117
            MNAPPTFESFLLFDGEKKI KE D KVPNA+IFTINKEDHTLGN++R QLLKDPNVLF GYK PHPLE+K +LRIQTTSDYTP DALMNAITDL+SELSLFEE FK+A++EK +  D
Sbjct:    1 MNAPPTFESFLLFDGEKKIVKELDQKVPNAAIFTINKEDHTLGNMIRDQLLKDPNVLFAGYKVPHPLEHKFVLRIQTTSDYTPQDALMNAITDLLSELSLFEERFKEAIKEKKEGLD 117          
BLAST of EMLSAG00000012196 vs. Select Arthropod Genomes
Match: XP_624001.1 (PREDICTED: DNA-directed RNA polymerase II subunit RPB11 [Apis mellifera])

HSP 1 Score: 194.126 bits (492), Expect = 7.918e-65
Identity = 89/117 (76.07%), Postives = 106/117 (90.60%), Query Frame = 0
Query:    1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117
            MNAPPTFESFLL++GEKKI KEQDTKVPNA+IFT+NKEDHTLGN++R+QLLKDP VLF GYK PHPLE+K ++RIQTTSDYTP +A M+AITDLI+ELSLFEE FK+A++EK +  D
Sbjct:    1 MNAPPTFESFLLYEGEKKIIKEQDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPQVLFAGYKVPHPLEHKFVIRIQTTSDYTPHEAFMHAITDLIAELSLFEERFKEAIKEKKEGLD 117          
BLAST of EMLSAG00000012196 vs. Select Arthropod Genomes
Match: EFX85388.1 (hypothetical protein DAPPUDRAFT_230556 [Daphnia pulex])

HSP 1 Score: 192.971 bits (489), Expect = 2.245e-64
Identity = 91/117 (77.78%), Postives = 103/117 (88.03%), Query Frame = 0
Query:    1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117
            MNAPP+FESFLLF+GEKKI  EQDTKVPNA+IFT+NKEDHTLGN++R QLLKDPNVLF GYK PHPLE+K ILRIQ+T  Y+P DALMNAITDLISELSL EE F+DAVREK +  +
Sbjct:    1 MNAPPSFESFLLFEGEKKIIVEQDTKVPNAAIFTVNKEDHTLGNMIRCQLLKDPNVLFAGYKQPHPLEHKFILRIQSTPAYSPHDALMNAITDLISELSLLEERFRDAVREKREGLE 117          
BLAST of EMLSAG00000012196 vs. Select Arthropod Genomes
Match: AAF53606.1 (Rpb11 [Drosophila melanogaster])

HSP 1 Score: 189.119 bits (479), Expect = 6.659e-63
Identity = 88/117 (75.21%), Postives = 105/117 (89.74%), Query Frame = 0
Query:    1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117
            MNAPPTFESFLL++GEKKI KE DTKV NA+IFTINKEDHTLGN++R+QLLKDPNVLF GYK PHPLE+K ++RIQTT+DY+P +A MNAITDL++ELSLFEE FKDA++EK +  D
Sbjct:    1 MNAPPTFESFLLYEGEKKIIKELDTKVTNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKVPHPLEHKFVIRIQTTADYSPQEAFMNAITDLLAELSLFEERFKDAIKEKKEGGD 117          
BLAST of EMLSAG00000012196 vs. Select Arthropod Genomes
Match: EAA14713.2 (AGAP009209-PA [Anopheles gambiae str. PEST])

HSP 1 Score: 187.963 bits (476), Expect = 1.995e-62
Identity = 87/117 (74.36%), Postives = 105/117 (89.74%), Query Frame = 0
Query:    1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117
            MNAPPTFESFLL++GEKKI KE D KVPNA+IFT+NKEDHTLGN++R+QLLKDPNVLF GYK PHPLE+K +LRIQTTS+Y+P +A MNAITDL+SELSLFEE F++A++EK +  D
Sbjct:    1 MNAPPTFESFLLYEGEKKIIKELDMKVPNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFVLRIQTTSEYSPHEAFMNAITDLLSELSLFEERFREAMKEKKEGGD 117          
BLAST of EMLSAG00000012196 vs. Select Arthropod Genomes
Match: gb|EEC09457.1| (RNA polymerases L, putative [Ixodes scapularis])

HSP 1 Score: 185.267 bits (469), Expect = 2.744e-61
Identity = 89/117 (76.07%), Postives = 100/117 (85.47%), Query Frame = 0
Query:    1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117
            MNAPP FESFLLF+GEKKIT E+DTKVPNA+IFT+NKEDHTLGN++R QLLKDP VLF GYK PHPLE+K ILR+QTT D TP +A  NAITDLISELSL EE FK++VREK D  D
Sbjct:    1 MNAPPAFESFLLFEGEKKITIEKDTKVPNAAIFTVNKEDHTLGNMIRAQLLKDPCVLFAGYKVPHPLEHKFILRVQTTPDSTPQEAFTNAITDLISELSLLEERFKESVREKHDGLD 117          
BLAST of EMLSAG00000012196 vs. Select Arthropod Genomes
Match: gb|KFM75502.1| (DNA-directed RNA polymerase II subunit RPB11, partial [Stegodyphus mimosarum])

HSP 1 Score: 183.341 bits (464), Expect = 1.310e-60
Identity = 85/112 (75.89%), Postives = 99/112 (88.39%), Query Frame = 0
Query:    1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREK 112
            MNAPP FESFLLF+GEKKIT E+DTKVPNA+IFT+NKEDHTLGN++++QLLKDPNVLF GYK PHPLE K +LR+QT  +Y+P +A  NAITDLISELSL EE FK+AVREK
Sbjct:    1 MNAPPAFESFLLFEGEKKITIEKDTKVPNAAIFTVNKEDHTLGNMIKNQLLKDPNVLFAGYKAPHPLEYKFLLRVQTVMEYSPQEAFTNAITDLISELSLLEERFKEAVREK 112          
BLAST of EMLSAG00000012196 vs. Select Arthropod Genomes
Match: gb|KPM11974.1| (DNA-directed RNA polymerase II subunit RPB11-like protein, partial [Sarcoptes scabiei])

HSP 1 Score: 102.449 bits (254), Expect = 3.415e-29
Identity = 45/69 (65.22%), Postives = 58/69 (84.06%), Query Frame = 0
Query:   49 QLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117
            QLLKDP V+F GYK PHPL+++ ILRIQTT DY+P +ALMNAI DLISE+SL EE F++A+RE+ + +D
Sbjct:    1 QLLKDPKVIFAGYKVPHPLQHEFILRIQTTPDYSPQEALMNAIKDLISEMSLLEERFREAIRERTEGYD 69          
BLAST of EMLSAG00000012196 vs. Select Arthropod Genomes
Match: gb|KPM10734.1| (DNA-directed RNA polymerases I and III subunit RPAC2-like protein [Sarcoptes scabiei])

HSP 1 Score: 63.929 bits (154), Expect = 1.022e-13
Identity = 32/80 (40.00%), Postives = 44/80 (55.00%), Query Frame = 0
Query:   30 ASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAV 109
               F    EDHTL NL+RHQ+L +P V F GY  PHP E    ++IQT   ++P  AL + +  +I      E+ F +AV
Sbjct:   17 CGTFKFFNEDHTLANLLRHQILMNPLVNFCGYSIPHPSEEYFQMQIQTKKGFSPYQALRDGLEAIIKLADNVEKLFTEAV 96          
BLAST of EMLSAG00000012196 vs. nr
Match: gi|290561711|gb|ADD38255.1| (DNA-directed RNA polymerase II subunit RPB11 [Lepeophtheirus salmonis])

HSP 1 Score: 238.424 bits (607), Expect = 1.011e-79
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0
Query:    1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117
            MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD
Sbjct:    1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117          
BLAST of EMLSAG00000012196 vs. nr
Match: gi|961377032|gb|ALS05260.1| (DNA-directed RNA polymerase II subunit RPB11 [Tortanus forcipatus])

HSP 1 Score: 207.223 bits (526), Expect = 2.320e-67
Identity = 99/117 (84.62%), Postives = 108/117 (92.31%), Query Frame = 0
Query:    1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117
            MNAPP FESFLLF+GEKKITKEQDTKVPNA+IFTINKEDHTLGN++R QLLKDPNVLF GYKNPHPLE+KIILR+QTTSDYTP DALMNAITDLISELSLFEE F+D +R+K D  D
Sbjct:    1 MNAPPPFESFLLFEGEKKITKEQDTKVPNAAIFTINKEDHTLGNMIRQQLLKDPNVLFAGYKNPHPLEHKIILRVQTTSDYTPQDALMNAITDLISELSLFEERFRDCLRDKQDGND 117          
BLAST of EMLSAG00000012196 vs. nr
Match: gi|91090444|ref|XP_966925.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB11 [Tribolium castaneum] >gi|270013848|gb|EFA10296.1| DNA-directed RNA polymerase II subunit RPB11-like Protein [Tribolium castaneum])

HSP 1 Score: 199.904 bits (507), Expect = 1.641e-64
Identity = 93/117 (79.49%), Postives = 108/117 (92.31%), Query Frame = 0
Query:    1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117
            MNAPPTFESFLL+DGEKKI +EQDTKVPNA+IFTINKEDHTLGN++R+QLLKDPNVLF GYK PHPLE+K +LRIQTTSDY+P +ALMN+ITDLISELSLFEE FK+A++EK +  D
Sbjct:    1 MNAPPTFESFLLYDGEKKIIREQDTKVPNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKVPHPLEHKFVLRIQTTSDYSPQEALMNSITDLISELSLFEERFKEAIKEKKEGLD 117          
BLAST of EMLSAG00000012196 vs. nr
Match: gi|646720040|gb|KDR21907.1| (DNA-directed RNA polymerase II subunit RPB11 [Zootermopsis nevadensis])

HSP 1 Score: 199.519 bits (506), Expect = 2.660e-64
Identity = 94/117 (80.34%), Postives = 108/117 (92.31%), Query Frame = 0
Query:    1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117
            MNAPPTFESFLLF+GEKKI KEQDTKVPNA+IFTINKEDHTLGN++R+QLLKDPNVLF GYK PHPLE+K ILRIQTTSDYTP DALM+AITDL++ELSLFEE F++A++EK +  D
Sbjct:    1 MNAPPTFESFLLFEGEKKIIKEQDTKVPNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFILRIQTTSDYTPQDALMHAITDLLAELSLFEERFREAIKEKKEGLD 117          
BLAST of EMLSAG00000012196 vs. nr
Match: gi|952521114|gb|KRT81334.1| (hypothetical protein AMK59_4939 [Oryctes borbonicus])

HSP 1 Score: 200.29 bits (508), Expect = 2.939e-64
Identity = 93/117 (79.49%), Postives = 108/117 (92.31%), Query Frame = 0
Query:    1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117
            MNAPPTFESFLL+DGEKKI +EQDTKVPNA+IFTINKEDHTLGN++R+QLLKDPNVLF GYK PHPLE+K +LRIQTTSDY+P +ALMNAITDLI+ELSLFEE FK+A++EK +  D
Sbjct:   22 MNAPPTFESFLLYDGEKKIIREQDTKVPNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFVLRIQTTSDYSPQEALMNAITDLIAELSLFEERFKEAIKEKREGLD 138          
BLAST of EMLSAG00000012196 vs. nr
Match: gi|242003519|ref|XP_002422761.1| (DNA-directed RNA polymerase II subunit J, putative [Pediculus humanus corporis] >gi|212505604|gb|EEB10023.1| DNA-directed RNA polymerase II subunit J, putative [Pediculus humanus corporis])

HSP 1 Score: 199.134 bits (505), Expect = 4.311e-64
Identity = 95/117 (81.20%), Postives = 105/117 (89.74%), Query Frame = 0
Query:    1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117
            MNAPPTFESFLLFDGEKKI KE D KVPNA+IFTINKEDHTLGN++R QLLKDPNVLF GYK PHPLE+K +LRIQTTSDYTP DALMNAITDL+SELSLFEE FK+A++EK +  D
Sbjct:    1 MNAPPTFESFLLFDGEKKIVKELDQKVPNAAIFTINKEDHTLGNMIRDQLLKDPNVLFAGYKVPHPLEHKFVLRIQTTSDYTPQDALMNAITDLLSELSLFEERFKEAIKEKKEGLD 117          
BLAST of EMLSAG00000012196 vs. nr
Match: gi|768415465|ref|XP_011548283.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB11 [Plutella xylostella])

HSP 1 Score: 198.364 bits (503), Expect = 6.759e-64
Identity = 91/117 (77.78%), Postives = 105/117 (89.74%), Query Frame = 0
Query:    1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117
            MNAPPTFESFLL+DGEKK+ KE+DTKVPNA+IFT+NKEDHTLGN++RHQLLKDP VLF GYK PHPLE+K +LRIQTTSDYTP +A MNAITDL SELSLFEE FK+A++EK +  D
Sbjct:    1 MNAPPTFESFLLYDGEKKVQKEEDTKVPNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAGYKVPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAIKEKKEGLD 117          
BLAST of EMLSAG00000012196 vs. nr
Match: gi|1073538965|gb|JAT86594.1| (hypothetical protein g.4041 [Pectinophora gossypiella])

HSP 1 Score: 198.364 bits (503), Expect = 8.418e-64
Identity = 92/117 (78.63%), Postives = 104/117 (88.89%), Query Frame = 0
Query:    1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117
            MNAPPTFESFLL+DGEKK+ KE+DTKV NA+IFT+NKEDHTLGN++RHQLLKDP VLF GYK PHPLE+K +LRIQTTSDYTP DA MNAITDL SELSLFEE FK+A++EK D  D
Sbjct:    1 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAGYKVPHPLEHKFVLRIQTTSDYTPQDAFMNAITDLTSELSLFEERFKEAIKEKKDGLD 117          
BLAST of EMLSAG00000012196 vs. nr
Match: gi|1080038817|ref|XP_018579911.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB11 [Anoplophora glabripennis])

HSP 1 Score: 197.978 bits (502), Expect = 1.037e-63
Identity = 92/117 (78.63%), Postives = 108/117 (92.31%), Query Frame = 0
Query:    1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117
            MNAPPTFESFLL+DGEKKI +EQDTKVPNA+IFTINKEDHTLGN++R+QLLKDPNVLF GYK PHPLE+K +LRIQTTSDY+P +ALM+AITDLI+ELSLFEE FK+A++EK +  D
Sbjct:    1 MNAPPTFESFLLYDGEKKIIREQDTKVPNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFVLRIQTTSDYSPQEALMHAITDLIAELSLFEERFKEAIKEKKEGLD 117          
BLAST of EMLSAG00000012196 vs. nr
Match: gi|357608007|gb|EHJ65777.1| (putative DNA-directed RNA polymerase II 13.3 kDa polypeptide [Danaus plexippus])

HSP 1 Score: 197.208 bits (500), Expect = 2.187e-63
Identity = 91/117 (77.78%), Postives = 104/117 (88.89%), Query Frame = 0
Query:    1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117
            MNAPPTFESFLL+DGEKK+ KE+DTKV NA+IFT+NKEDH+LGN++RHQLLKDP VLF GYK PHPLE+K +LRIQTTSDYTP DA MNAITDL SELSLFEE FK+A++EK D  D
Sbjct:    1 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHSLGNMIRHQLLKDPKVLFAGYKVPHPLEHKFVLRIQTTSDYTPQDAFMNAITDLTSELSLFEERFKEAIKEKKDGLD 117          
BLAST of EMLSAG00000012196 vs. Tigriopus kingsejongenis genes
Match: snap_masked-scaffold272_size230267-processed-gene-0.13 (protein:Tk00257 transcript:snap_masked-scaffold272_size230267-processed-gene-0.13-mRNA-1 annotation:"dna-directed rna polymerase ii subunit rpb11")

HSP 1 Score: 186.422 bits (472), Expect = 3.441e-62
Identity = 88/100 (88.00%), Postives = 96/100 (96.00%), Query Frame = 0
Query:   15 GEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKAD 114
            GEKKITKEQDTKVPNAS+FTINKEDHTLGN++R QLLKDP+VLF+GYKNPHPLE+K+ILRIQTTSDYTP +ALMNAITDLISELSLFEE FKDAVREK D
Sbjct:   62 GEKKITKEQDTKVPNASLFTINKEDHTLGNMIRCQLLKDPSVLFSGYKNPHPLEHKVILRIQTTSDYTPQEALMNAITDLISELSLFEERFKDAVREKQD 161          
BLAST of EMLSAG00000012196 vs. Tigriopus kingsejongenis genes
Match: snap_masked-scaffold23_size669530-processed-gene-1.6 (protein:Tk11055 transcript:snap_masked-scaffold23_size669530-processed-gene-1.6-mRNA-1 annotation:"dna-directed rna polymerases i and iii subunit rpac2")

HSP 1 Score: 65.0846 bits (157), Expect = 7.550e-15
Identity = 30/83 (36.14%), Postives = 46/83 (55.42%), Query Frame = 0
Query:   29 NASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVRE 111
            N   F    E HTLGN +++ +L++P V F GY  PHP E+++ LRIQT ++    D L   + DL +   +    F  AV++
Sbjct:   58 NCRTFIFKGESHTLGNALKNVILQNPAVSFCGYSIPHPAEDQMFLRIQTVANVPAQDVLKQGLHDLKAICGITRSKFNRAVQK 140          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000012196 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 25
Match NameE-valueIdentityDescription
-5.330e-6175.21symbol:Rpb11 "Rpb11" species:7227 "Drosophila mela... [more]
-2.381e-5670.09symbol:Polr2j "polymerase (RNA) II (DNA directed) ... [more]
-4.673e-5670.09symbol:Polr2j "polymerase (RNA) II (DNA directed) ... [more]
-4.673e-5670.09symbol:POLR2J "DNA-directed RNA polymerase II subu... [more]
-4.673e-5670.09symbol:LOC100686835 "Uncharacterized protein" spec... [more]
-4.673e-5670.09symbol:POLR2J "DNA-directed RNA polymerase II subu... [more]
-8.407e-5670.18symbol:polr2j "polymerase (RNA) II (DNA directed) ... [more]
-1.056e-5569.23symbol:F1NFM7 "Uncharacterized protein" species:90... [more]
-4.175e-5475.47symbol:LOC100686835 "Uncharacterized protein" spec... [more]
-5.224e-5475.47symbol:POLR2J1 "RPB11a protein" species:9606 "Homo... [more]

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BLAST of EMLSAG00000012196 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 7
Match NameE-valueIdentityDescription
gi|592776197|gb|GAXK01178371.1|2.905e-6780.34TSA: Calanus finmarchicus comp14926_c0_seq1 transc... [more]
gi|592802160|gb|GAXK01152408.1|2.222e-6181.65TSA: Calanus finmarchicus comp223114_c0_seq1 trans... [more]
gi|592802159|gb|GAXK01152409.1|1.531e-2373.68TSA: Calanus finmarchicus comp223114_c0_seq2 trans... [more]
gi|592850880|gb|GAXK01106664.1|3.059e-1646.75TSA: Calanus finmarchicus comp36758_c0_seq1 transc... [more]
gi|592838398|gb|GAXK01119146.1|1.428e-235.82TSA: Calanus finmarchicus comp2021500_c0_seq1 tran... [more]
gi|592941868|gb|GAXK01016685.1|5.806e-140.63TSA: Calanus finmarchicus comp283535_c1_seq1 trans... [more]
gi|592924437|gb|GAXK01033978.1|7.433e-130.00TSA: Calanus finmarchicus comp7373046_c0_seq1 tran... [more]
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BLAST of EMLSAG00000012196 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000121965.824e-82100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s881:20972... [more]
EMLSAP000000084593.419e-1243.55pep:novel supercontig:LSalAtl2s:LSalAtl2s51:131167... [more]
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BLAST of EMLSAG00000012196 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
gi|11387116|sp|Q9VJE4.1|RPB11_DROME1.374e-6275.21RecName: Full=DNA-directed RNA polymerase II subun... [more]
gi|74839219|sp|Q7PVQ9.2|RPB11_ANOGA4.115e-6274.36RecName: Full=DNA-directed RNA polymerase II subun... [more]
gi|2500634|sp|O08740.1|RPB11_MOUSE6.689e-5870.09RecName: Full=DNA-directed RNA polymerase II subun... [more]
gi|1710661|sp|P52435.1|RPB11_HUMAN1.320e-5770.09RecName: Full=DNA-directed RNA polymerase II subun... [more]
gi|74725032|sp|Q9H1A7.1|RPB1C_HUMAN1.111e-5271.56RecName: Full=DNA-directed RNA polymerase II subun... [more]
gi|613504330|sp|Q9GZM3.2|RPB1B_HUMAN2.501e-5271.56RecName: Full=DNA-directed RNA polymerase II subun... [more]
gi|74845978|sp|Q60SM4.1|RPB11_CAEBR2.905e-4965.81RecName: Full=Probable DNA-directed RNA polymerase... [more]
gi|11387118|sp|Q9XVH6.1|RPB11_CAEEL1.749e-4764.96RecName: Full=Probable DNA-directed RNA polymerase... [more]
gi|74861274|sp|Q86JJ5.1|RPB11_DICDI8.137e-3648.72RecName: Full=DNA-directed RNA polymerase II subun... [more]
gi|3219858|sp|Q38859.1|NRPBB_ARATH5.063e-3548.28RecName: Full=DNA-directed RNA polymerases II, IV ... [more]

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BLAST of EMLSAG00000012196 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 17
Match NameE-valueIdentityDescription
gb|EFA10296.1|3.355e-6779.49DNA-directed RNA polymerase II subunit RPB11-like ... [more]
EEB10023.18.810e-6781.20DNA-directed RNA polymerase II subunit J, putative... [more]
XP_624001.17.918e-6576.07PREDICTED: DNA-directed RNA polymerase II subunit ... [more]
EFX85388.12.245e-6477.78hypothetical protein DAPPUDRAFT_230556 [Daphnia pu... [more]
AAF53606.16.659e-6375.21Rpb11 [Drosophila melanogaster][more]
EAA14713.21.995e-6274.36AGAP009209-PA [Anopheles gambiae str. PEST][more]
gb|EEC09457.1|2.744e-6176.07RNA polymerases L, putative [Ixodes scapularis][more]
gb|KFM75502.1|1.310e-6075.89DNA-directed RNA polymerase II subunit RPB11, part... [more]
gb|KPM11974.1|3.415e-2965.22DNA-directed RNA polymerase II subunit RPB11-like ... [more]
gb|KPM10734.1|1.022e-1340.00DNA-directed RNA polymerases I and III subunit RPA... [more]

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BLAST of EMLSAG00000012196 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 25
Match NameE-valueIdentityDescription
gi|290561711|gb|ADD38255.1|1.011e-79100.00DNA-directed RNA polymerase II subunit RPB11 [Lepe... [more]
gi|961377032|gb|ALS05260.1|2.320e-6784.62DNA-directed RNA polymerase II subunit RPB11 [Tort... [more]
gi|91090444|ref|XP_966925.1|1.641e-6479.49PREDICTED: DNA-directed RNA polymerase II subunit ... [more]
gi|646720040|gb|KDR21907.1|2.660e-6480.34DNA-directed RNA polymerase II subunit RPB11 [Zoot... [more]
gi|952521114|gb|KRT81334.1|2.939e-6479.49hypothetical protein AMK59_4939 [Oryctes borbonicu... [more]
gi|242003519|ref|XP_002422761.1|4.311e-6481.20DNA-directed RNA polymerase II subunit J, putative... [more]
gi|768415465|ref|XP_011548283.1|6.759e-6477.78PREDICTED: DNA-directed RNA polymerase II subunit ... [more]
gi|1073538965|gb|JAT86594.1|8.418e-6478.63hypothetical protein g.4041 [Pectinophora gossypie... [more]
gi|1080038817|ref|XP_018579911.1|1.037e-6378.63PREDICTED: DNA-directed RNA polymerase II subunit ... [more]
gi|357608007|gb|EHJ65777.1|2.187e-6377.78putative DNA-directed RNA polymerase II 13.3 kDa p... [more]

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BLAST of EMLSAG00000012196 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 2
Match NameE-valueIdentityDescription
snap_masked-scaffold272_size230267-processed-gene-0.133.441e-6288.00protein:Tk00257 transcript:snap_masked-scaffold272... [more]
snap_masked-scaffold23_size669530-processed-gene-1.67.550e-1536.14protein:Tk11055 transcript:snap_masked-scaffold23_... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s881supercontigLSalAtl2s881:209726..210574 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s881-augustus-gene-1.33
Biotypeprotein_coding
EvidenceIEA
NoteDNA-directed RNA polymerase II subunit RPB11
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000012196 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000012196EMLSAT00000012196-708043Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s881:209726..210574+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000012196-694962 ID=EMLSAG00000012196-694962|Name=EMLSAG00000012196|organism=Lepeophtheirus salmonis|type=gene|length=849bp|location=Sequence derived from alignment at LSalAtl2s881:209726..210574+ (Lepeophtheirus salmonis)
TATGCGTCCTATGTGTGGCTATATTCAAGGAAGACTAGAAACACTTGTCT TCATTGCTATATTGCTAAAAAGGGGATAGGAGAAGGCATCTGAATTTTTT TATCATAAAACTTATGACGTCATGAATTAATATTACACAATAATAATTAA ATCTAGTGACTTTCAAATTGAAATAAATTATGAATGCGCCTCCGACCTTC GAATCCTTTTTACTCTTTGACGGAGAGAAAAAGATTACAAAAGAGCAGGA TACAAAAGTTCCTAATGCCTCCATTTTTACAATAAATAAAGAAGATCATA CCTTAGGTAACTTGGTTCGTCATCAATTACTCAAGGATCCCAATGTTCTT TTCACCGGCTATAAGAATCCTCATCCACTCGAGAATAAGATCATTCTCCG AATCCAGGTTTTGTTCATGTGTGCAGTAGTATGATGCCTTTCCATTTACA AGTATATTTATTTGCAGACTACATCGGACTATACTCCTTTAGATGCTTTG ATGAACGCAATCACGGATTTAATATCAGAGTTATCCTTATTTGAGGAGAG CTTTAAAGATGCCGTTCGGGAAAAGGCGGATCGTTTTGACTAATCTACTT CAATTATCTTTTTTGTCTATTAATATATTTTGTGAAGGACTTTGATATTA TATAATATAAAGCACTAATTCGTGGATTTTCATACTAATACGATTTGCAG AGTTTTAAAATCATTTAAAAGTTAATTTATAATCCATCCAATATAATGGC GGCAAGTCTATAATAGAGGGTTTTCTCGTGACAGCTATTTTGAAAGATGC ATATTAAGGAAAATAGTCGACTATTAGATGTCAAATTAGGAATAAAAGA
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