EMLSAG00000012196, EMLSAG00000012196-694962 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000012196 vs. GO
Match: - (symbol:Rpb11 "Rpb11" species:7227 "Drosophila melanogaster" [GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS;NAS] [GO:0005665 "DNA-directed RNA polymerase II, core complex" evidence=ISS] [GO:0005634 "nucleus" evidence=NAS] [GO:0006351 "transcription, DNA-templated" evidence=NAS] [GO:0046983 "protein dimerization activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154 EMBL:AE014134 GO:GO:0003677 GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 SUPFAM:SSF55257 eggNOG:COG1761 GeneTree:ENSGT00550000074975 KO:K03008 OrthoDB:EOG7GN2P7 OMA:EHKILLR RefSeq:NP_609836.1 UniGene:Dm.12029 ProteinModelPortal:Q9VJE4 SMR:Q9VJE4 BioGrid:61039 DIP:DIP-20854N IntAct:Q9VJE4 MINT:MINT-877703 PaxDb:Q9VJE4 PRIDE:Q9VJE4 EnsemblMetazoa:FBtr0081011 GeneID:35043 KEGG:dme:Dmel_CG6840 UCSC:CG6840-RA CTD:35043 FlyBase:FBgn0032634 InParanoid:Q9VJE4 PhylomeDB:Q9VJE4 GenomeRNAi:35043 NextBio:791526 PRO:PR:Q9VJE4 Bgee:Q9VJE4 Uniprot:Q9VJE4) HSP 1 Score: 189.119 bits (479), Expect = 5.330e-61 Identity = 88/117 (75.21%), Postives = 105/117 (89.74%), Query Frame = 0 Query: 1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117 MNAPPTFESFLL++GEKKI KE DTKV NA+IFTINKEDHTLGN++R+QLLKDPNVLF GYK PHPLE+K ++RIQTT+DY+P +A MNAITDL++ELSLFEE FKDA++EK + D Sbjct: 1 MNAPPTFESFLLYEGEKKIIKELDTKVTNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKVPHPLEHKFVIRIQTTADYSPQEAFMNAITDLLAELSLFEERFKDAIKEKKEGGD 117
BLAST of EMLSAG00000012196 vs. GO
Match: - (symbol:Polr2j "polymerase (RNA) II (DNA directed) polypeptide J" species:10090 "Mus musculus" [GO:0001055 "RNA polymerase II activity" evidence=IBA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005665 "DNA-directed RNA polymerase II, core complex" evidence=ISO;IDA] [GO:0006351 "transcription, DNA-templated" evidence=IEA] [GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISO] [GO:0030275 "LRR domain binding" evidence=ISO] [GO:0046983 "protein dimerization activity" evidence=IEA] InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154 MGI:MGI:109582 GO:GO:0003677 GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 SUPFAM:SSF55257 eggNOG:COG1761 HOGENOM:HOG000179862 HOVERGEN:HBG073419 ChiTaRS:POLR2J EMBL:D85818 UniGene:Mm.4896 ProteinModelPortal:O08740 SMR:O08740 IntAct:O08740 MINT:MINT-4133029 PhosphoSite:O08740 PaxDb:O08740 PRIDE:O08740 InParanoid:O08740 PRO:PR:O08740 CleanEx:MM_POLR2J Genevestigator:O08740 Uniprot:O08740) HSP 1 Score: 177.178 bits (448), Expect = 2.381e-56 Identity = 82/117 (70.09%), Postives = 99/117 (84.62%), Query Frame = 0 Query: 1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117 MNAPP FESFLLF+GEKKIT +DTKVPNA +FTINKEDHTLGN+++ QLLKDP VLF GYK PHPLE+KII+R+QTT DY+P +A NAITDLISELSL EE F+ A+++K + + Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRGAIKDKQEGIE 117
BLAST of EMLSAG00000012196 vs. GO
Match: - (symbol:Polr2j "polymerase (RNA) II (DNA directed) polypeptide J" species:10116 "Rattus norvegicus" [GO:0001055 "RNA polymerase II activity" evidence=IBA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005665 "DNA-directed RNA polymerase II, core complex" evidence=ISO;IBA] [GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISO] [GO:0030275 "LRR domain binding" evidence=IEA;ISO] [GO:0046983 "protein dimerization activity" evidence=IEA] InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154 RGD:1310198 GO:GO:0003677 GO:GO:0006366 EMBL:CH473973 GO:GO:0003899 GO:GO:0005665 SUPFAM:SSF55257 CTD:5439 GeneTree:ENSGT00550000074975 KO:K03008 OMA:FAAYKVE OrthoDB:EOG7GN2P7 TreeFam:TF103044 EMBL:AABR06071155 RefSeq:NP_001099391.1 UniGene:Rn.816 Ensembl:ENSRNOT00000001941 GeneID:288588 KEGG:rno:288588 UCSC:RGD:1310198 NextBio:628366 PRO:PR:D3ZQI0 Uniprot:D3ZQI0) HSP 1 Score: 176.792 bits (447), Expect = 4.673e-56 Identity = 82/117 (70.09%), Postives = 99/117 (84.62%), Query Frame = 0 Query: 1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117 MNAPP FESFLLF+GEKKIT +DTKVPNA +FTINKEDHTLGN+++ QLLKDP VLF GYK PHPLE+KII+R+QTT DY+P +A NAITDLISELSL EE F+ A+++K + + Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE 117
BLAST of EMLSAG00000012196 vs. GO
Match: - (symbol:POLR2J "DNA-directed RNA polymerase II subunit RPB11-a" species:9606 "Homo sapiens" [GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005665 "DNA-directed RNA polymerase II, core complex" evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006283 "transcription-coupled nucleotide-excision repair" evidence=TAS] [GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006366 "transcription from RNA polymerase II promoter" evidence=IDA;TAS] [GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=TAS] [GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=TAS] [GO:0006370 "7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS] [GO:0016032 "viral process" evidence=TAS] [GO:0030275 "LRR domain binding" evidence=IPI] [GO:0046983 "protein dimerization activity" evidence=IEA] [GO:0050434 "positive regulation of viral transcription" evidence=TAS] [GO:0001055 "RNA polymerase II activity" evidence=IBA] Reactome:REACT_216 Reactome:REACT_71 InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154 Reactome:REACT_116125 GO:GO:0016032 GO:GO:0003677 GO:GO:0006368 EMBL:AC093668 GO:GO:0006367 GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006370 GO:GO:0050434 GO:GO:0006283 Reactome:REACT_1892 GO:GO:0003899 GO:GO:0005665 SUPFAM:SSF55257 eggNOG:COG1761 HOGENOM:HOG000179862 CTD:5439 HOVERGEN:HBG073419 KO:K03008 OrthoDB:EOG7GN2P7 TreeFam:TF103044 EMBL:X82385 EMBL:L37127 EMBL:X98433 EMBL:AK290515 EMBL:BC024165 EMBL:BC065711 EMBL:BC139902 EMBL:BC141830 PIR:S71325 RefSeq:NP_006225.1 UniGene:Hs.654952 ProteinModelPortal:P52435 SMR:P52435 BioGrid:111435 DIP:DIP-32913N IntAct:P52435 MINT:MINT-131416 STRING:9606.ENSP00000292614 PhosphoSite:P52435 DMDM:1710661 PaxDb:P52435 PRIDE:P52435 DNASU:5439 Ensembl:ENST00000292614 GeneID:5439 KEGG:hsa:5439 UCSC:uc003uzp.1 GeneCards:GC07M102113 H-InvDB:HIX0025314 HGNC:HGNC:9197 HPA:HPA044010 HPA:HPA046970 MIM:604150 neXtProt:NX_P52435 PharmGKB:PA33517 ChiTaRS:POLR2J GeneWiki:POLR2J GenomeRNAi:5439 NextBio:21045 PRO:PR:P52435 ArrayExpress:P52435 Bgee:P52435 CleanEx:HS_POLR2J Genevestigator:P52435 Uniprot:P52435) HSP 1 Score: 176.792 bits (447), Expect = 4.673e-56 Identity = 82/117 (70.09%), Postives = 99/117 (84.62%), Query Frame = 0 Query: 1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117 MNAPP FESFLLF+GEKKIT +DTKVPNA +FTINKEDHTLGN+++ QLLKDP VLF GYK PHPLE+KII+R+QTT DY+P +A NAITDLISELSL EE F+ A+++K + + Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE 117
BLAST of EMLSAG00000012196 vs. GO
Match: - (symbol:LOC100686835 "Uncharacterized protein" species:9615 "Canis lupus familiaris" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription, DNA-templated" evidence=IEA] [GO:0046983 "protein dimerization activity" evidence=IEA] InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 SUPFAM:SSF55257 GeneTree:ENSGT00550000074975 EMBL:AAEX03004255 ProteinModelPortal:E2RD80 SMR:E2RD80 Ensembl:ENSCAFT00000038247 Uniprot:E2RD80) HSP 1 Score: 176.792 bits (447), Expect = 4.673e-56 Identity = 82/117 (70.09%), Postives = 99/117 (84.62%), Query Frame = 0 Query: 1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117 MNAPP FESFLLF+GEKKIT +DTKVPNA +FTINKEDHTLGN+++ QLLKDP VLF GYK PHPLE+KII+R+QTT DY+P +A NAITDLISELSL EE F+ A+++K + + Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE 117
BLAST of EMLSAG00000012196 vs. GO
Match: - (symbol:POLR2J "DNA-directed RNA polymerase II subunit RPB11" species:9913 "Bos taurus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase II, core complex" evidence=ISS;IBA] [GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISS] [GO:0046983 "protein dimerization activity" evidence=IEA] [GO:0001055 "RNA polymerase II activity" evidence=IBA] InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154 GO:GO:0003677 GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 SUPFAM:SSF55257 eggNOG:COG1761 HOGENOM:HOG000179862 EMBL:BC108226 RefSeq:NP_001032560.1 UniGene:Bt.748 ProteinModelPortal:Q32P79 SMR:Q32P79 STRING:9913.ENSBTAP00000007165 Ensembl:ENSBTAT00000007165 GeneID:540428 KEGG:bta:540428 CTD:5439 GeneTree:ENSGT00550000074975 HOVERGEN:HBG073419 InParanoid:Q32P79 KO:K03008 OMA:FAAYKVE OrthoDB:EOG7GN2P7 TreeFam:TF103044 NextBio:20878632 Uniprot:Q32P79) HSP 1 Score: 176.792 bits (447), Expect = 4.673e-56 Identity = 82/117 (70.09%), Postives = 99/117 (84.62%), Query Frame = 0 Query: 1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117 MNAPP FESFLLF+GEKKIT +DTKVPNA +FTINKEDHTLGN+++ QLLKDP VLF GYK PHPLE+KII+R+QTT DY+P +A NAITDLISELSL EE F+ A+++K + + Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE 117
BLAST of EMLSAG00000012196 vs. GO
Match: - (symbol:polr2j "polymerase (RNA) II (DNA directed) polypeptide J" species:7955 "Danio rerio" [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0046983 "protein dimerization activity" evidence=IEA] [GO:0006351 "transcription, DNA-templated" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core complex" evidence=IBA] [GO:0001055 "RNA polymerase II activity" evidence=IBA] InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154 ZFIN:ZDB-GENE-050522-120 GO:GO:0003677 GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 SUPFAM:SSF55257 eggNOG:COG1761 HOGENOM:HOG000179862 CTD:5439 GeneTree:ENSGT00550000074975 HOVERGEN:HBG073419 KO:K03008 OMA:FAAYKVE OrthoDB:EOG7GN2P7 TreeFam:TF103044 EMBL:BX294180 EMBL:BC095123 EMBL:BC165488 RefSeq:NP_001019571.1 UniGene:Dr.86671 STRING:7955.ENSDARP00000050901 Ensembl:ENSDART00000050902 GeneID:554099 KEGG:dre:554099 InParanoid:Q4VBU5 NextBio:20880666 PRO:PR:Q4VBU5 Uniprot:Q4VBU5) HSP 1 Score: 176.022 bits (445), Expect = 8.407e-56 Identity = 80/114 (70.18%), Postives = 98/114 (85.96%), Query Frame = 0 Query: 1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKAD 114 MNAPP FESFLLF+GEKKIT +DTKVPNA +FT+NKEDHTLGN++R QLLKDP VLF GYK PHPLE+K+++R+QTT DY+P +A NAITDLISELSL EE F+ A+++K + Sbjct: 1 MNAPPAFESFLLFEGEKKITITKDTKVPNACLFTLNKEDHTLGNIIRSQLLKDPQVLFAGYKVPHPLEHKVVIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQE 114
BLAST of EMLSAG00000012196 vs. GO
Match: - (symbol:F1NFM7 "Uncharacterized protein" species:9031 "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core complex" evidence=IBA] [GO:0006366 "transcription from RNA polymerase II promoter" evidence=IBA] [GO:0046983 "protein dimerization activity" evidence=IEA] [GO:0001055 "RNA polymerase II activity" evidence=IBA] InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154 GO:GO:0003677 GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 SUPFAM:SSF55257 GeneTree:ENSGT00550000074975 OrthoDB:EOG7GN2P7 TreeFam:TF103044 EMBL:AADN03007663 Ensembl:ENSGALT00000002880 Uniprot:F1NFM7) HSP 1 Score: 175.637 bits (444), Expect = 1.056e-55 Identity = 81/117 (69.23%), Postives = 99/117 (84.62%), Query Frame = 0 Query: 1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117 MNAPP FESFLLF+GEK+IT +DTKVPNA +FTINKEDHTLGN+++ QLLKDP VLF GYK PHPLE+KII+R+QTT DY+P +A NAITDLISELSL EE F+ A+++K + + Sbjct: 1 MNAPPAFESFLLFEGEKRITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE 117
BLAST of EMLSAG00000012196 vs. GO
Match: - (symbol:LOC100686835 "Uncharacterized protein" species:9615 "Canis lupus familiaris" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core complex" evidence=IBA] [GO:0006366 "transcription from RNA polymerase II promoter" evidence=IBA] [GO:0046983 "protein dimerization activity" evidence=IEA] [GO:0001055 "RNA polymerase II activity" evidence=IBA] InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154 GO:GO:0003677 GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 SUPFAM:SSF55257 GeneTree:ENSGT00550000074975 OrthoDB:EOG7GN2P7 TreeFam:TF103044 OMA:EHKILLR EMBL:AAEX03004255 Ensembl:ENSCAFT00000021705 Uniprot:F1PXE5) HSP 1 Score: 172.17 bits (435), Expect = 4.175e-54 Identity = 80/106 (75.47%), Postives = 92/106 (86.79%), Query Frame = 0 Query: 1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFK 106 MNAPP FESFLLF+GEKKIT +DTKVPNA +FTINKEDHTLGN+++ QLLKDP VLF GYK PHPLE+KII+R+QTT DY+P +A NAITDLISELSL EE F+ Sbjct: 22 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFR 127
BLAST of EMLSAG00000012196 vs. GO
Match: - (symbol:POLR2J1 "RPB11a protein" species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription, DNA-templated" evidence=IEA] [GO:0046983 "protein dimerization activity" evidence=IEA] InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154 GO:GO:0003677 GO:GO:0006351 EMBL:AC093668 GO:GO:0003899 SUPFAM:SSF55257 HOGENOM:HOG000179862 HOVERGEN:HBG073419 UniGene:Hs.654952 HGNC:HGNC:9197 ChiTaRS:POLR2J EMBL:AJ277932 EMBL:AJ277928 EMBL:AJ277929 EMBL:AJ277930 ProteinModelPortal:Q9H1A6 SMR:Q9H1A6 PRIDE:Q9H1A6 Ensembl:ENST00000393794 OMA:NTMANSS ArrayExpress:Q9H1A6 Uniprot:Q9H1A6) HSP 1 Score: 171.785 bits (434), Expect = 5.224e-54 Identity = 80/106 (75.47%), Postives = 92/106 (86.79%), Query Frame = 0 Query: 1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFK 106 MNAPP FESFLLF+GEKKIT +DTKVPNA +FTINKEDHTLGN+++ QLLKDP VLF GYK PHPLE+KII+R+QTT DY+P +A NAITDLISELSL EE F+ Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFR 106
BLAST of EMLSAG00000012196 vs. C. finmarchicus
Match: gi|592776197|gb|GAXK01178371.1| (TSA: Calanus finmarchicus comp14926_c0_seq1 transcribed RNA sequence) HSP 1 Score: 206.068 bits (523), Expect = 2.905e-67 Identity = 94/117 (80.34%), Postives = 108/117 (92.31%), Query Frame = 0 Query: 1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117 MNAPPTFESFLLFDGEKKIT+EQDTKVPNA++FTINKEDHTLGN++R QLLKDPNVLF GYKNPHP+ENK++LRIQTTSDY P DALMN+ITDLISELSLFEE F++ +++K D D Sbjct: 35 MNAPPTFESFLLFDGEKKITREQDTKVPNAAVFTINKEDHTLGNMIRQQLLKDPNVLFAGYKNPHPMENKVVLRIQTTSDYAPNDALMNSITDLISELSLFEERFREGLKDKQDGID 385
BLAST of EMLSAG00000012196 vs. C. finmarchicus
Match: gi|592802160|gb|GAXK01152408.1| (TSA: Calanus finmarchicus comp223114_c0_seq1 transcribed RNA sequence) HSP 1 Score: 191.43 bits (485), Expect = 2.222e-61 Identity = 89/109 (81.65%), Postives = 101/109 (92.66%), Query Frame = 0 Query: 1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAV 109 MNAPPTFESFLLFDGEKKIT+EQDTKVPNA+IFT+NKEDHTLGN++RHQLLKDPNVLF GYKNP P N+II+R+QTTSDYTP DA +NAITDL+SELSLFEE FK+ + Sbjct: 137 MNAPPTFESFLLFDGEKKITREQDTKVPNAAIFTLNKEDHTLGNMIRHQLLKDPNVLFAGYKNPSPFVNQIIIRVQTTSDYTPNDAFINAITDLLSELSLFEERFKEQL 463
BLAST of EMLSAG00000012196 vs. C. finmarchicus
Match: gi|592802159|gb|GAXK01152409.1| (TSA: Calanus finmarchicus comp223114_c0_seq2 transcribed RNA sequence) HSP 1 Score: 91.6633 bits (226), Expect = 1.531e-23 Identity = 42/57 (73.68%), Postives = 49/57 (85.96%), Query Frame = 0 Query: 53 DPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAV 109 DPNVLF GYKNP P N+II+R+QTTSDYTP DA +NAITDL+SELSLFEE FK+ + Sbjct: 137 DPNVLFAGYKNPSPFVNQIIIRVQTTSDYTPNDAFINAITDLLSELSLFEERFKEQL 307
BLAST of EMLSAG00000012196 vs. C. finmarchicus
Match: gi|592850880|gb|GAXK01106664.1| (TSA: Calanus finmarchicus comp36758_c0_seq1 transcribed RNA sequence) HSP 1 Score: 73.559 bits (179), Expect = 3.059e-16 Identity = 36/77 (46.75%), Postives = 49/77 (63.64%), Query Frame = 0 Query: 33 FTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAV 109 F ++E+HTLGN +RH LL +P V+F GY PHP E+++ +RIQT DY AL A+ DL S L ++ F D V Sbjct: 125 FIFHQENHTLGNSLRHMLLMNPRVVFAGYTIPHPAEDQMHIRIQTVEDYPAQTALKTALQDLKSLAVLSKQKFLDDV 355
BLAST of EMLSAG00000012196 vs. C. finmarchicus
Match: gi|592838398|gb|GAXK01119146.1| (TSA: Calanus finmarchicus comp2021500_c0_seq1 transcribed RNA sequence) HSP 1 Score: 34.6538 bits (78), Expect = 1.428e-2 Identity = 24/67 (35.82%), Postives = 34/67 (50.75%), Query Frame = 0 Query: 43 GNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAV 109 GN +RH LL +P V+ GY ++ + L I DY +AL A+ DL S L ++ F D V Sbjct: 1 GNSLRHMLLMNPRVVIAGYTIT---QD*MHLSI*MVEDYPAQNALKTALQDLKSMGELSKQKFLDDV 192
BLAST of EMLSAG00000012196 vs. C. finmarchicus
Match: gi|592941868|gb|GAXK01016685.1| (TSA: Calanus finmarchicus comp283535_c1_seq1 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 5.806e-1 Identity = 13/32 (40.62%), Postives = 20/32 (62.50%), Query Frame = 0 Query: 37 KEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLE 68 KED + +++HQL+K PN+ + N H LE Sbjct: 4073 KEDMVVDGMIQHQLIKCPNITYRILLNKHLLE 4168
BLAST of EMLSAG00000012196 vs. C. finmarchicus
Match: gi|592924437|gb|GAXK01033978.1| (TSA: Calanus finmarchicus comp7373046_c0_seq1 transcribed RNA sequence) HSP 1 Score: 30.8018 bits (68), Expect = 7.433e-1 Identity = 24/80 (30.00%), Postives = 36/80 (45.00%), Query Frame = 0 Query: 15 GEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDL 94 ++ I+K + SI H+L L RH ++D + L TG +P PL+ K IQT P+D + DL Sbjct: 92 SKRNISKSCERMNAQCSICDFETTSHSL--LKRH--MRDDHALTTGSTSP-PLKKKRTTSIQTVVSEDPMDIEETDVADL 316
BLAST of EMLSAG00000012196 vs. L. salmonis peptides
Match: EMLSAP00000012196 (pep:novel supercontig:LSalAtl2s:LSalAtl2s881:209726:210574:1 gene:EMLSAG00000012196 transcript:EMLSAT00000012196 description:"maker-LSalAtl2s881-augustus-gene-1.33") HSP 1 Score: 238.424 bits (607), Expect = 5.824e-82 Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 Query: 1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD Sbjct: 1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117
BLAST of EMLSAG00000012196 vs. L. salmonis peptides
Match: EMLSAP00000008459 (pep:novel supercontig:LSalAtl2s:LSalAtl2s51:1311671:1338820:-1 gene:EMLSAG00000008459 transcript:EMLSAT00000008459 description:"maker-LSalAtl2s51-augustus-gene-13.14") HSP 1 Score: 62.003 bits (149), Expect = 3.419e-12 Identity = 27/62 (43.55%), Postives = 40/62 (64.52%), Query Frame = 0 Query: 33 FTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDL 94 F E+HTLGN +R +L++P V+F GY PHP E++++LRIQT + +AL + DL Sbjct: 24 FVFKGENHTLGNALRTVILQNPEVIFCGYSXPHPAEDQMLLRIQTVNSSPAQEALKKGLEDL 85
BLAST of EMLSAG00000012196 vs. SwissProt
Match: gi|11387116|sp|Q9VJE4.1|RPB11_DROME (RecName: Full=DNA-directed RNA polymerase II subunit RPB11; Short=RNA polymerase II subunit B11; AltName: Full=DNA-directed RNA polymerase II 13.3 kDa polypeptide; AltName: Full=DNA-directed RNA polymerase II subunit J) HSP 1 Score: 189.119 bits (479), Expect = 1.374e-62 Identity = 88/117 (75.21%), Postives = 105/117 (89.74%), Query Frame = 0 Query: 1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117 MNAPPTFESFLL++GEKKI KE DTKV NA+IFTINKEDHTLGN++R+QLLKDPNVLF GYK PHPLE+K ++RIQTT+DY+P +A MNAITDL++ELSLFEE FKDA++EK + D Sbjct: 1 MNAPPTFESFLLYEGEKKIIKELDTKVTNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKVPHPLEHKFVIRIQTTADYSPQEAFMNAITDLLAELSLFEERFKDAIKEKKEGGD 117
BLAST of EMLSAG00000012196 vs. SwissProt
Match: gi|74839219|sp|Q7PVQ9.2|RPB11_ANOGA (RecName: Full=DNA-directed RNA polymerase II subunit RPB11; Short=RNA polymerase II subunit B11; AltName: Full=DNA-directed RNA polymerase II subunit J) HSP 1 Score: 187.963 bits (476), Expect = 4.115e-62 Identity = 87/117 (74.36%), Postives = 105/117 (89.74%), Query Frame = 0 Query: 1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117 MNAPPTFESFLL++GEKKI KE D KVPNA+IFT+NKEDHTLGN++R+QLLKDPNVLF GYK PHPLE+K +LRIQTTS+Y+P +A MNAITDL+SELSLFEE F++A++EK + D Sbjct: 1 MNAPPTFESFLLYEGEKKIIKELDMKVPNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFVLRIQTTSEYSPHEAFMNAITDLLSELSLFEERFREAMKEKKEGGD 117
BLAST of EMLSAG00000012196 vs. SwissProt
Match: gi|2500634|sp|O08740.1|RPB11_MOUSE (RecName: Full=DNA-directed RNA polymerase II subunit RPB11; Short=RNA polymerase II subunit B11; AltName: Full=DNA-directed RNA polymerase II subunit J; AltName: Full=RNA polymerase II 13.3 kDa subunit; AltName: Full=RPB14) HSP 1 Score: 177.178 bits (448), Expect = 6.689e-58 Identity = 82/117 (70.09%), Postives = 99/117 (84.62%), Query Frame = 0 Query: 1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117 MNAPP FESFLLF+GEKKIT +DTKVPNA +FTINKEDHTLGN+++ QLLKDP VLF GYK PHPLE+KII+R+QTT DY+P +A NAITDLISELSL EE F+ A+++K + + Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRGAIKDKQEGIE 117
BLAST of EMLSAG00000012196 vs. SwissProt
Match: gi|1710661|sp|P52435.1|RPB11_HUMAN (RecName: Full=DNA-directed RNA polymerase II subunit RPB11-a; Short=RNA polymerase II subunit B11-a; Short=RPB11a; AltName: Full=DNA-directed RNA polymerase II subunit J-1; AltName: Full=RNA polymerase II 13.3 kDa subunit >gi|116256059|sp|Q32P79.1|RPB11_BOVIN RecName: Full=DNA-directed RNA polymerase II subunit RPB11; Short=RNA polymerase II subunit B11; AltName: Full=DNA-directed RNA polymerase II subunit J) HSP 1 Score: 176.792 bits (447), Expect = 1.320e-57 Identity = 82/117 (70.09%), Postives = 99/117 (84.62%), Query Frame = 0 Query: 1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117 MNAPP FESFLLF+GEKKIT +DTKVPNA +FTINKEDHTLGN+++ QLLKDP VLF GYK PHPLE+KII+R+QTT DY+P +A NAITDLISELSL EE F+ A+++K + + Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE 117
BLAST of EMLSAG00000012196 vs. SwissProt
Match: gi|74725032|sp|Q9H1A7.1|RPB1C_HUMAN (RecName: Full=DNA-directed RNA polymerase II subunit RPB11-b2; Short=RNA polymerase II subunit B11-b2; Short=RPB11b2; AltName: Full=DNA-directed RNA polymerase II subunit J3) HSP 1 Score: 164.081 bits (414), Expect = 1.111e-52 Identity = 78/109 (71.56%), Postives = 92/109 (84.40%), Query Frame = 0 Query: 1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAV 109 MNAPP FESFLLF+GEK IT +DTKVPNA +FT+NKEDHTLGN+++ QLLKDP VLF GYK PHPLE+KII+R+QTT DY+P +A NAITDLISELSL EE F+ + Sbjct: 1 MNAPPAFESFLLFEGEK-ITINKDTKVPNACLFTMNKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRTCL 108
BLAST of EMLSAG00000012196 vs. SwissProt
Match: gi|613504330|sp|Q9GZM3.2|RPB1B_HUMAN (RecName: Full=DNA-directed RNA polymerase II subunit RPB11-b1; Short=RNA polymerase II subunit B11-b1; Short=RPB11b1; AltName: Full=DNA-directed RNA polymerase II subunit J2) HSP 1 Score: 163.31 bits (412), Expect = 2.501e-52 Identity = 78/109 (71.56%), Postives = 91/109 (83.49%), Query Frame = 0 Query: 1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAV 109 MNAPP FESFLLF+GEK IT +DTKVP A +FTINKEDHTLGN+++ QLLKDP VLF GYK PHPLE+KII+R+QTT DY+P +A NAITDLISELSL EE F+ + Sbjct: 1 MNAPPAFESFLLFEGEK-ITINKDTKVPKACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRTCL 108
BLAST of EMLSAG00000012196 vs. SwissProt
Match: gi|74845978|sp|Q60SM4.1|RPB11_CAEBR (RecName: Full=Probable DNA-directed RNA polymerase II subunit RPB11; Short=RNA polymerase II subunit B11; AltName: Full=DNA-directed RNA polymerase II subunit J) HSP 1 Score: 155.606 bits (392), Expect = 2.905e-49 Identity = 77/117 (65.81%), Postives = 91/117 (77.78%), Query Frame = 0 Query: 1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117 MNAP FESFLL D +KKI E+DTKVPNA+IFTINKEDHTLGN+++ QLLKDP VLF GYKNPHPLE+KI+LR+QTT+ TP DAL AITDL+ ELSL E A+++ D Sbjct: 1 MNAPAAFESFLLLD-DKKIYIEKDTKVPNAAIFTINKEDHTLGNMLKIQLLKDPEVLFAGYKNPHPLEHKILLRVQTTNATTPADALTTAITDLVGELSLLEHRIDSAIKKCTQSTD 116
BLAST of EMLSAG00000012196 vs. SwissProt
Match: gi|11387118|sp|Q9XVH6.1|RPB11_CAEEL (RecName: Full=Probable DNA-directed RNA polymerase II subunit RPB11; Short=RNA polymerase II subunit B11; AltName: Full=DNA-directed RNA polymerase II subunit J) HSP 1 Score: 151.369 bits (381), Expect = 1.749e-47 Identity = 76/117 (64.96%), Postives = 90/117 (76.92%), Query Frame = 0 Query: 1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117 MNAP FESFLL D +KK E+DTKVPNA+IFTI KEDHTLGN+++ QLLKDP VLF GYKNPHPLE+KI+LRIQTT++ TP DAL AITDL+ ELSL E A+++ D Sbjct: 1 MNAPAAFESFLLLD-DKKFYIEKDTKVPNAAIFTIMKEDHTLGNMLKIQLLKDPEVLFAGYKNPHPLEHKILLRIQTTNNTTPADALTTAITDLVGELSLLEHRIDAAIKKCTQSGD 116
BLAST of EMLSAG00000012196 vs. SwissProt
Match: gi|74861274|sp|Q86JJ5.1|RPB11_DICDI (RecName: Full=DNA-directed RNA polymerase II subunit rpb11; Short=RNA polymerase II subunit B11; AltName: Full=DNA-directed RNA polymerase II subunit J) HSP 1 Score: 121.709 bits (304), Expect = 8.137e-36 Identity = 57/117 (48.72%), Postives = 83/117 (70.94%), Query Frame = 0 Query: 1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117 MNAP FE F+L DG KK+T +DTK+PNAS+FTI KEDHT+GNL+R QL+ D +++F GY+ PHPLE+ + +RIQT ++ PL+ + ++ L E + E SF + V++K + D Sbjct: 1 MNAPDRFELFVLPDGAKKVTMVRDTKIPNASMFTILKEDHTIGNLIRMQLIADQDIIFAGYRMPHPLEHNVNIRIQTNNNTNPLECVQKSMECLSREFTSLENSFIEQVQKKRNVAD 117
BLAST of EMLSAG00000012196 vs. SwissProt
Match: gi|3219858|sp|Q38859.1|NRPBB_ARATH (RecName: Full=DNA-directed RNA polymerases II, IV and V subunit 11; AltName: Full=DNA-directed RNA polymerase II 13.6 kDa polypeptide; AltName: Full=DNA-directed RNA polymerase II subunit J; AltName: Full=DNA-directed RNA polymerase II subunit RPB11; Short=RNA polymerase II subunit B11) HSP 1 Score: 119.398 bits (298), Expect = 5.063e-35 Identity = 56/116 (48.28%), Postives = 82/116 (70.69%), Query Frame = 0 Query: 1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRF 116 MNAP +E F++ +G KK++ ++DTK+ NA+ FT+ +EDHT+GN+VR QL +D NVLF GY+ PHPL+ KII+RI TTS +P+ A AI DL EL + F+ V + +++F Sbjct: 1 MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAKFSNQF 116
BLAST of EMLSAG00000012196 vs. Select Arthropod Genomes
Match: gb|EFA10296.1| (DNA-directed RNA polymerase II subunit RPB11-like Protein [Tribolium castaneum]) HSP 1 Score: 199.904 bits (507), Expect = 3.355e-67 Identity = 93/117 (79.49%), Postives = 108/117 (92.31%), Query Frame = 0 Query: 1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117 MNAPPTFESFLL+DGEKKI +EQDTKVPNA+IFTINKEDHTLGN++R+QLLKDPNVLF GYK PHPLE+K +LRIQTTSDY+P +ALMN+ITDLISELSLFEE FK+A++EK + D Sbjct: 1 MNAPPTFESFLLYDGEKKIIREQDTKVPNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKVPHPLEHKFVLRIQTTSDYSPQEALMNSITDLISELSLFEERFKEAIKEKKEGLD 117
BLAST of EMLSAG00000012196 vs. Select Arthropod Genomes
Match: EEB10023.1 (DNA-directed RNA polymerase II subunit J, putative [Pediculus humanus corporis]) HSP 1 Score: 199.134 bits (505), Expect = 8.810e-67 Identity = 95/117 (81.20%), Postives = 105/117 (89.74%), Query Frame = 0 Query: 1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117 MNAPPTFESFLLFDGEKKI KE D KVPNA+IFTINKEDHTLGN++R QLLKDPNVLF GYK PHPLE+K +LRIQTTSDYTP DALMNAITDL+SELSLFEE FK+A++EK + D Sbjct: 1 MNAPPTFESFLLFDGEKKIVKELDQKVPNAAIFTINKEDHTLGNMIRDQLLKDPNVLFAGYKVPHPLEHKFVLRIQTTSDYTPQDALMNAITDLLSELSLFEERFKEAIKEKKEGLD 117
BLAST of EMLSAG00000012196 vs. Select Arthropod Genomes
Match: XP_624001.1 (PREDICTED: DNA-directed RNA polymerase II subunit RPB11 [Apis mellifera]) HSP 1 Score: 194.126 bits (492), Expect = 7.918e-65 Identity = 89/117 (76.07%), Postives = 106/117 (90.60%), Query Frame = 0 Query: 1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117 MNAPPTFESFLL++GEKKI KEQDTKVPNA+IFT+NKEDHTLGN++R+QLLKDP VLF GYK PHPLE+K ++RIQTTSDYTP +A M+AITDLI+ELSLFEE FK+A++EK + D Sbjct: 1 MNAPPTFESFLLYEGEKKIIKEQDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPQVLFAGYKVPHPLEHKFVIRIQTTSDYTPHEAFMHAITDLIAELSLFEERFKEAIKEKKEGLD 117
BLAST of EMLSAG00000012196 vs. Select Arthropod Genomes
Match: EFX85388.1 (hypothetical protein DAPPUDRAFT_230556 [Daphnia pulex]) HSP 1 Score: 192.971 bits (489), Expect = 2.245e-64 Identity = 91/117 (77.78%), Postives = 103/117 (88.03%), Query Frame = 0 Query: 1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117 MNAPP+FESFLLF+GEKKI EQDTKVPNA+IFT+NKEDHTLGN++R QLLKDPNVLF GYK PHPLE+K ILRIQ+T Y+P DALMNAITDLISELSL EE F+DAVREK + + Sbjct: 1 MNAPPSFESFLLFEGEKKIIVEQDTKVPNAAIFTVNKEDHTLGNMIRCQLLKDPNVLFAGYKQPHPLEHKFILRIQSTPAYSPHDALMNAITDLISELSLLEERFRDAVREKREGLE 117
BLAST of EMLSAG00000012196 vs. Select Arthropod Genomes
Match: AAF53606.1 (Rpb11 [Drosophila melanogaster]) HSP 1 Score: 189.119 bits (479), Expect = 6.659e-63 Identity = 88/117 (75.21%), Postives = 105/117 (89.74%), Query Frame = 0 Query: 1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117 MNAPPTFESFLL++GEKKI KE DTKV NA+IFTINKEDHTLGN++R+QLLKDPNVLF GYK PHPLE+K ++RIQTT+DY+P +A MNAITDL++ELSLFEE FKDA++EK + D Sbjct: 1 MNAPPTFESFLLYEGEKKIIKELDTKVTNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKVPHPLEHKFVIRIQTTADYSPQEAFMNAITDLLAELSLFEERFKDAIKEKKEGGD 117
BLAST of EMLSAG00000012196 vs. Select Arthropod Genomes
Match: EAA14713.2 (AGAP009209-PA [Anopheles gambiae str. PEST]) HSP 1 Score: 187.963 bits (476), Expect = 1.995e-62 Identity = 87/117 (74.36%), Postives = 105/117 (89.74%), Query Frame = 0 Query: 1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117 MNAPPTFESFLL++GEKKI KE D KVPNA+IFT+NKEDHTLGN++R+QLLKDPNVLF GYK PHPLE+K +LRIQTTS+Y+P +A MNAITDL+SELSLFEE F++A++EK + D Sbjct: 1 MNAPPTFESFLLYEGEKKIIKELDMKVPNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFVLRIQTTSEYSPHEAFMNAITDLLSELSLFEERFREAMKEKKEGGD 117
BLAST of EMLSAG00000012196 vs. Select Arthropod Genomes
Match: gb|EEC09457.1| (RNA polymerases L, putative [Ixodes scapularis]) HSP 1 Score: 185.267 bits (469), Expect = 2.744e-61 Identity = 89/117 (76.07%), Postives = 100/117 (85.47%), Query Frame = 0 Query: 1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117 MNAPP FESFLLF+GEKKIT E+DTKVPNA+IFT+NKEDHTLGN++R QLLKDP VLF GYK PHPLE+K ILR+QTT D TP +A NAITDLISELSL EE FK++VREK D D Sbjct: 1 MNAPPAFESFLLFEGEKKITIEKDTKVPNAAIFTVNKEDHTLGNMIRAQLLKDPCVLFAGYKVPHPLEHKFILRVQTTPDSTPQEAFTNAITDLISELSLLEERFKESVREKHDGLD 117
BLAST of EMLSAG00000012196 vs. Select Arthropod Genomes
Match: gb|KFM75502.1| (DNA-directed RNA polymerase II subunit RPB11, partial [Stegodyphus mimosarum]) HSP 1 Score: 183.341 bits (464), Expect = 1.310e-60 Identity = 85/112 (75.89%), Postives = 99/112 (88.39%), Query Frame = 0 Query: 1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREK 112 MNAPP FESFLLF+GEKKIT E+DTKVPNA+IFT+NKEDHTLGN++++QLLKDPNVLF GYK PHPLE K +LR+QT +Y+P +A NAITDLISELSL EE FK+AVREK Sbjct: 1 MNAPPAFESFLLFEGEKKITIEKDTKVPNAAIFTVNKEDHTLGNMIKNQLLKDPNVLFAGYKAPHPLEYKFLLRVQTVMEYSPQEAFTNAITDLISELSLLEERFKEAVREK 112
BLAST of EMLSAG00000012196 vs. Select Arthropod Genomes
Match: gb|KPM11974.1| (DNA-directed RNA polymerase II subunit RPB11-like protein, partial [Sarcoptes scabiei]) HSP 1 Score: 102.449 bits (254), Expect = 3.415e-29 Identity = 45/69 (65.22%), Postives = 58/69 (84.06%), Query Frame = 0 Query: 49 QLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117 QLLKDP V+F GYK PHPL+++ ILRIQTT DY+P +ALMNAI DLISE+SL EE F++A+RE+ + +D Sbjct: 1 QLLKDPKVIFAGYKVPHPLQHEFILRIQTTPDYSPQEALMNAIKDLISEMSLLEERFREAIRERTEGYD 69
BLAST of EMLSAG00000012196 vs. Select Arthropod Genomes
Match: gb|KPM10734.1| (DNA-directed RNA polymerases I and III subunit RPAC2-like protein [Sarcoptes scabiei]) HSP 1 Score: 63.929 bits (154), Expect = 1.022e-13 Identity = 32/80 (40.00%), Postives = 44/80 (55.00%), Query Frame = 0 Query: 30 ASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAV 109 F EDHTL NL+RHQ+L +P V F GY PHP E ++IQT ++P AL + + +I E+ F +AV Sbjct: 17 CGTFKFFNEDHTLANLLRHQILMNPLVNFCGYSIPHPSEEYFQMQIQTKKGFSPYQALRDGLEAIIKLADNVEKLFTEAV 96
BLAST of EMLSAG00000012196 vs. nr
Match: gi|290561711|gb|ADD38255.1| (DNA-directed RNA polymerase II subunit RPB11 [Lepeophtheirus salmonis]) HSP 1 Score: 238.424 bits (607), Expect = 1.011e-79 Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 Query: 1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD Sbjct: 1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117
BLAST of EMLSAG00000012196 vs. nr
Match: gi|961377032|gb|ALS05260.1| (DNA-directed RNA polymerase II subunit RPB11 [Tortanus forcipatus]) HSP 1 Score: 207.223 bits (526), Expect = 2.320e-67 Identity = 99/117 (84.62%), Postives = 108/117 (92.31%), Query Frame = 0 Query: 1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117 MNAPP FESFLLF+GEKKITKEQDTKVPNA+IFTINKEDHTLGN++R QLLKDPNVLF GYKNPHPLE+KIILR+QTTSDYTP DALMNAITDLISELSLFEE F+D +R+K D D Sbjct: 1 MNAPPPFESFLLFEGEKKITKEQDTKVPNAAIFTINKEDHTLGNMIRQQLLKDPNVLFAGYKNPHPLEHKIILRVQTTSDYTPQDALMNAITDLISELSLFEERFRDCLRDKQDGND 117
BLAST of EMLSAG00000012196 vs. nr
Match: gi|91090444|ref|XP_966925.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB11 [Tribolium castaneum] >gi|270013848|gb|EFA10296.1| DNA-directed RNA polymerase II subunit RPB11-like Protein [Tribolium castaneum]) HSP 1 Score: 199.904 bits (507), Expect = 1.641e-64 Identity = 93/117 (79.49%), Postives = 108/117 (92.31%), Query Frame = 0 Query: 1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117 MNAPPTFESFLL+DGEKKI +EQDTKVPNA+IFTINKEDHTLGN++R+QLLKDPNVLF GYK PHPLE+K +LRIQTTSDY+P +ALMN+ITDLISELSLFEE FK+A++EK + D Sbjct: 1 MNAPPTFESFLLYDGEKKIIREQDTKVPNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKVPHPLEHKFVLRIQTTSDYSPQEALMNSITDLISELSLFEERFKEAIKEKKEGLD 117
BLAST of EMLSAG00000012196 vs. nr
Match: gi|646720040|gb|KDR21907.1| (DNA-directed RNA polymerase II subunit RPB11 [Zootermopsis nevadensis]) HSP 1 Score: 199.519 bits (506), Expect = 2.660e-64 Identity = 94/117 (80.34%), Postives = 108/117 (92.31%), Query Frame = 0 Query: 1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117 MNAPPTFESFLLF+GEKKI KEQDTKVPNA+IFTINKEDHTLGN++R+QLLKDPNVLF GYK PHPLE+K ILRIQTTSDYTP DALM+AITDL++ELSLFEE F++A++EK + D Sbjct: 1 MNAPPTFESFLLFEGEKKIIKEQDTKVPNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFILRIQTTSDYTPQDALMHAITDLLAELSLFEERFREAIKEKKEGLD 117
BLAST of EMLSAG00000012196 vs. nr
Match: gi|952521114|gb|KRT81334.1| (hypothetical protein AMK59_4939 [Oryctes borbonicus]) HSP 1 Score: 200.29 bits (508), Expect = 2.939e-64 Identity = 93/117 (79.49%), Postives = 108/117 (92.31%), Query Frame = 0 Query: 1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117 MNAPPTFESFLL+DGEKKI +EQDTKVPNA+IFTINKEDHTLGN++R+QLLKDPNVLF GYK PHPLE+K +LRIQTTSDY+P +ALMNAITDLI+ELSLFEE FK+A++EK + D Sbjct: 22 MNAPPTFESFLLYDGEKKIIREQDTKVPNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFVLRIQTTSDYSPQEALMNAITDLIAELSLFEERFKEAIKEKREGLD 138
BLAST of EMLSAG00000012196 vs. nr
Match: gi|242003519|ref|XP_002422761.1| (DNA-directed RNA polymerase II subunit J, putative [Pediculus humanus corporis] >gi|212505604|gb|EEB10023.1| DNA-directed RNA polymerase II subunit J, putative [Pediculus humanus corporis]) HSP 1 Score: 199.134 bits (505), Expect = 4.311e-64 Identity = 95/117 (81.20%), Postives = 105/117 (89.74%), Query Frame = 0 Query: 1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117 MNAPPTFESFLLFDGEKKI KE D KVPNA+IFTINKEDHTLGN++R QLLKDPNVLF GYK PHPLE+K +LRIQTTSDYTP DALMNAITDL+SELSLFEE FK+A++EK + D Sbjct: 1 MNAPPTFESFLLFDGEKKIVKELDQKVPNAAIFTINKEDHTLGNMIRDQLLKDPNVLFAGYKVPHPLEHKFVLRIQTTSDYTPQDALMNAITDLLSELSLFEERFKEAIKEKKEGLD 117
BLAST of EMLSAG00000012196 vs. nr
Match: gi|768415465|ref|XP_011548283.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB11 [Plutella xylostella]) HSP 1 Score: 198.364 bits (503), Expect = 6.759e-64 Identity = 91/117 (77.78%), Postives = 105/117 (89.74%), Query Frame = 0 Query: 1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117 MNAPPTFESFLL+DGEKK+ KE+DTKVPNA+IFT+NKEDHTLGN++RHQLLKDP VLF GYK PHPLE+K +LRIQTTSDYTP +A MNAITDL SELSLFEE FK+A++EK + D Sbjct: 1 MNAPPTFESFLLYDGEKKVQKEEDTKVPNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAGYKVPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAIKEKKEGLD 117
BLAST of EMLSAG00000012196 vs. nr
Match: gi|1073538965|gb|JAT86594.1| (hypothetical protein g.4041 [Pectinophora gossypiella]) HSP 1 Score: 198.364 bits (503), Expect = 8.418e-64 Identity = 92/117 (78.63%), Postives = 104/117 (88.89%), Query Frame = 0 Query: 1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117 MNAPPTFESFLL+DGEKK+ KE+DTKV NA+IFT+NKEDHTLGN++RHQLLKDP VLF GYK PHPLE+K +LRIQTTSDYTP DA MNAITDL SELSLFEE FK+A++EK D D Sbjct: 1 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAGYKVPHPLEHKFVLRIQTTSDYTPQDAFMNAITDLTSELSLFEERFKEAIKEKKDGLD 117
BLAST of EMLSAG00000012196 vs. nr
Match: gi|1080038817|ref|XP_018579911.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB11 [Anoplophora glabripennis]) HSP 1 Score: 197.978 bits (502), Expect = 1.037e-63 Identity = 92/117 (78.63%), Postives = 108/117 (92.31%), Query Frame = 0 Query: 1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117 MNAPPTFESFLL+DGEKKI +EQDTKVPNA+IFTINKEDHTLGN++R+QLLKDPNVLF GYK PHPLE+K +LRIQTTSDY+P +ALM+AITDLI+ELSLFEE FK+A++EK + D Sbjct: 1 MNAPPTFESFLLYDGEKKIIREQDTKVPNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFVLRIQTTSDYSPQEALMHAITDLIAELSLFEERFKEAIKEKKEGLD 117
BLAST of EMLSAG00000012196 vs. nr
Match: gi|357608007|gb|EHJ65777.1| (putative DNA-directed RNA polymerase II 13.3 kDa polypeptide [Danaus plexippus]) HSP 1 Score: 197.208 bits (500), Expect = 2.187e-63 Identity = 91/117 (77.78%), Postives = 104/117 (88.89%), Query Frame = 0 Query: 1 MNAPPTFESFLLFDGEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKADRFD 117 MNAPPTFESFLL+DGEKK+ KE+DTKV NA+IFT+NKEDH+LGN++RHQLLKDP VLF GYK PHPLE+K +LRIQTTSDYTP DA MNAITDL SELSLFEE FK+A++EK D D Sbjct: 1 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHSLGNMIRHQLLKDPKVLFAGYKVPHPLEHKFVLRIQTTSDYTPQDAFMNAITDLTSELSLFEERFKEAIKEKKDGLD 117
BLAST of EMLSAG00000012196 vs. Tigriopus kingsejongenis genes
Match: snap_masked-scaffold272_size230267-processed-gene-0.13 (protein:Tk00257 transcript:snap_masked-scaffold272_size230267-processed-gene-0.13-mRNA-1 annotation:"dna-directed rna polymerase ii subunit rpb11") HSP 1 Score: 186.422 bits (472), Expect = 3.441e-62 Identity = 88/100 (88.00%), Postives = 96/100 (96.00%), Query Frame = 0 Query: 15 GEKKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVREKAD 114 GEKKITKEQDTKVPNAS+FTINKEDHTLGN++R QLLKDP+VLF+GYKNPHPLE+K+ILRIQTTSDYTP +ALMNAITDLISELSLFEE FKDAVREK D Sbjct: 62 GEKKITKEQDTKVPNASLFTINKEDHTLGNMIRCQLLKDPSVLFSGYKNPHPLEHKVILRIQTTSDYTPQEALMNAITDLISELSLFEERFKDAVREKQD 161
BLAST of EMLSAG00000012196 vs. Tigriopus kingsejongenis genes
Match: snap_masked-scaffold23_size669530-processed-gene-1.6 (protein:Tk11055 transcript:snap_masked-scaffold23_size669530-processed-gene-1.6-mRNA-1 annotation:"dna-directed rna polymerases i and iii subunit rpac2") HSP 1 Score: 65.0846 bits (157), Expect = 7.550e-15 Identity = 30/83 (36.14%), Postives = 46/83 (55.42%), Query Frame = 0 Query: 29 NASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVRE 111 N F E HTLGN +++ +L++P V F GY PHP E+++ LRIQT ++ D L + DL + + F AV++ Sbjct: 58 NCRTFIFKGESHTLGNALKNVILQNPAVSFCGYSIPHPAEDQMFLRIQTVANVPAQDVLKQGLHDLKAICGITRSKFNRAVQK 140 The following BLAST results are available for this feature:
BLAST of EMLSAG00000012196 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 25
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BLAST of EMLSAG00000012196 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 7
BLAST of EMLSAG00000012196 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 2
BLAST of EMLSAG00000012196 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 25
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BLAST of EMLSAG00000012196 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 17
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BLAST of EMLSAG00000012196 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 25
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BLAST of EMLSAG00000012196 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 2
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s881:209726..210574+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000012196-694962 ID=EMLSAG00000012196-694962|Name=EMLSAG00000012196|organism=Lepeophtheirus salmonis|type=gene|length=849bp|location=Sequence derived from alignment at LSalAtl2s881:209726..210574+ (Lepeophtheirus salmonis)back to top Add to Basket
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