EMLSAT00000005374, EMLSAT00000005374-701221 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000005374
Unique NameEMLSAT00000005374-701221
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: -Missing-
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
Nauplia: Disembodied dib unknown
  1. Nauplius1
 -Missing-
-Missing- 		15.02.2015 - 11:13
22.02.2015 - 00:00
Halloween gene nvd,dib,shd unknown
  1. Nauplius1
 Non
-Missing- 		08.10.2015 - 12:55
14.10.2015 - 00:00
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s28supercontigLSalAtl2s28:147448..149791 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000005374 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000005374EMLSAG00000005374-688140Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000023460EMLSAE00000023460-732388Lepeophtheirus salmonisexon
EMLSAE00000023461EMLSAE00000023461-732389Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto773263auto773263Lepeophtheirus salmonispolypeptide
EMLSAP00000005374EMLSAP00000005374Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000005374

>EMLSAP00000005374 ID=EMLSAP00000005374|Name=EMLSAP00000005374|organism=Lepeophtheirus salmonis|type=polypeptide|length=375bp
MNKLKPFSSIPGPRSWPIVGTLPYYFLKPCKKYDFKRLDRNGFLKYDEFG
SIVRENIGPGVNILWLYDPEDIKKMFQYDDTRLGAMKEDNMDPDSIPSKL
IKCAFQTNSNILITDNGPPLWKVFETKEYKALRESQNYIENISLKFIRNK
MNNLNTNPLSNNHLTLLDQYFVMDKLDEKDILTMVCDSLLAGIDTSSYTT
GFMLYYLAKYPQVQARLRETIHELPLDHNLKNFSFGRAVLKETLRLNPVS
VGIGRICQTSDAVFSGYSVPKGTVLVSQNQISCRLEKYFDRPHVFNPKRW
MDKNQNYHPYLVLPFGFGPRMCIGRRIAEMSILHLLIELLKKYEIKLKDP
KLELGCISYLIXSPXKPLQLELKRV
back to top

mRNA from alignment at LSalAtl2s28:147448..149791+

Legend: exonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000005374-701221 ID=EMLSAT00000005374-701221|Name=EMLSAT00000005374|organism=Lepeophtheirus salmonis|type=mRNA|length=2344bp|location=Sequence derived from alignment at LSalAtl2s28:147448..149791+ (Lepeophtheirus salmonis)
CTGAAAATCATGAATAAGCTGAAGCCCTTTTCATCCATTCCTGGGCCAAG
GTCATGGCCCATTGTCGGTACTCTTCCCTATTATTTCTTAAAGCCGTGTA
AAAAGTATGATTTCAAGAGATTAGATAGAAATGGGTTTTTAAAATATGAT
GAATTTGGTTCTATCGTTCGGGAGAATATTGGACCTGGAGTCAATATTTT
GTGGCTTTATGACCCTGAAGATATTAAAAAAATGTTTCAATACGACGGTA
GATGCCCTGCCAGGAGATCTCACTTAGCTTTAGAAAAATATCGAAAAGAT
AGGCCTCATTTGTAAGGAAATTAGAATTACAGCTTTTTTATTAATATTAG
GTATGGAGAAGAGAACGGAGACAGTTGCAACATGCCTTTTTTTTCCTCAA
ACATAAAAAGACTAAGCCCTCAAAATTTGTGGTAGAATTGTATAATAGGA
TGTCAGTCAATTATTTTTGAAAACAAATGTATTCTTCTATATTATTTTCC
AAGCGATTGCATAAAAACTTTTTTTGAGAGGCATTTTTTAACTGAGTACT
ATTTTCGTAATAAAAAAGTCAGTTTTCATTATTATTACCCTAACAACTAT
CATTTGAGTTATTAATTATTTAACTGTCACTTAATATAACAAAATTGAAA
GGTTACTAATTTAGGAGAAATTTGAGATACTAGAATGCTCAACACAAAGA
AGTCAGTTGCTACAAGTATTGCAACTGACCGGGAATTGTTTACTCTTCTT
TAATAAACCATATCATCTACACTTAATTAAAATACAGTATGTTTATTATA
TATGAATATAAAAATTAATAGAAGAGGACTCTTATCAATGATCTATAATA
TAAATAACATATCTTAACATGCCATATAATAATATATTTAAAGTTAATAA
CCTTGAAAAACCTAGTCATTTGTTACTCAAAAATATTATTTAGACTAATT
TTCTTAATTTCGAACTCGAAAGTTGATTTTTTAGCCGTTGCAACTGTTCC
CCGTATCTAGTGACAGTTGTAACATTCAAATATAATCTTGGAAAGGACTA
CTAATTGGTATAATCTCTGCAGATATTAAAAAATAGTAAGCATGTATGGA
TATGTTCTGGTAAATTTTGCCGTAACCGTGTATGACCAGCTCCGAGTAAT
TGAACCGAAACAAAAAGTGTTGCGACTCTACCAAATCTCCCCCTGCTGGT
TGCAAATTTTAATTAATTAACTATTATTTCTAGATACAACGAGGGTGGAC
TTTTACCCACCAATGGAGAAGAGTGGTGGAGAATTAGACAAGCATTGCAA
AGACCCTTGAATATATCCAAATCGTTTGAAAATTTTCATCCCTCATTTGG
AGAAATAGCGACTGAATTCGTTGACTCTATTAATAGGACCTCTGATGATT
TTGTTGAGGATCTTAAACGATATTTTTTGGAGATTACAGGGTTTTTCACC
CTAGATACCCGATTAGGAGCAATGAAAGAAGACAACATGGATCCAGATTC
CATTCCGTCAAAACTAATAAAATGTGCTTTTCAAACCAATAGTAATATTT
TAATAACGGACAATGGACCTCCCCTGTGGAAGGTTTTTGAAACTAAAGAA
TACAAAGCACTACGAGAGAGTCAAAATTATATTGAAAATATATCCTTGAA
GTTTATAAGAAATAAAATGAATAATTTAAATACAAATCCATTATCCAATA
ACCATTTAACACTATTGGATCAATATTTTGTAATGGATAAACTTGATGAA
AAGGATATTCTAACGATGGTTTGCGATTCCTTACTCGCAGGGATCGATAC
GAGTTCTTATACAACAGGGTTTATGCTCTACTATCTAGCAAAGTATCCTC
AAGTACAGGCTCGTTTAAGGGAAACCATCCATGAACTTCCATTGGATCAT
AATCTTAAAAACTTTTCATTTGGAAGAGCGGTTCTAAAGGAAACGCTTCG
CCTTAATCCAGTATCAGTTGGAATTGGTAGAATATGTCAAACATCTGACG
CCGTATTTTCCGGTTATTCTGTGCCGAAAGGGACTGTTCTTGTGAGTCAA
AATCAAATTTCATGTCGATTGGAAAAATATTTTGATCGGCCTCATGTCTT
TAATCCCAAGAGATGGATGGACAAGAACCAAAATTATCATCCTTATTTAG
TCCTGCCCTTTGGATTTGGACCCAGAATGTGCATTGGTAGAAGAATTGCA
GAAATGTCTATCCTGCATCTATTAATAGAGCTGTTGAAAAAATATGAGAT
CAAATTAAAGGATCCAAAGTTAGAATTGGGTTGTATCTCCTATTTRATAA
MCTCYCCCGAMAAGCCGCTTCAACTCGAATTGAAAAGAGTTTAA
back to top
Add to Basket