EMLSAT00000010792, EMLSAT00000010792-706639 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000010792
Unique Name	EMLSAT00000010792-706639
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: no visible phenotype
Gallery Image	Title	Gene or target symbol	Sex/Stage	Phenotype	Date
	NAF F50	LsFer1	unknown Nauplius I Copepodid	no phenotype no visible phenotype	16.06.2014 - 00:00 23.06.2014 - 00:00
	NAG F50	LsFer1	unknown Nauplius I Copepodid	no phenotype no visible phenotype	19.06.2014 - 00:00 27.06.2014 - 00:00

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s714	supercontig	LSalAtl2s714:285142..291484 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000010792 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000010792	EMLSAG00000010792-693558	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000048100	EMLSAE00000048100-757028	Lepeophtheirus salmonis	exon
EMLSAE00000048101	EMLSAE00000048101-757029	Lepeophtheirus salmonis	exon
EMLSAE00000048102	EMLSAE00000048102-757030	Lepeophtheirus salmonis	exon
EMLSAE00000048103	EMLSAE00000048103-757031	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto775853	auto775853	Lepeophtheirus salmonis	polypeptide
EMLSAP00000010792	EMLSAP00000010792	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s714:285142..291484+

protein sequence of EMLSAP00000010792

>EMLSAP00000010792 ID=EMLSAP00000010792|Name=EMLSAP00000010792|organism=Lepeophtheirus salmonis|type=polypeptide|length=236bp
MRFLILTIFIYTANGQSCFNAPGGAMHTDDKAGGHNLQWTKAMISKPAPF
WKGTAVVKGEMKEVQLSDYKGKYLVFFFYPLDFTFVCPTEILAFNDRVEE
FRKINTEVVACSVDSHFTHLAWTNLPRKEGGLGKLNIPLLSDLTHSISKD
YGVYLEENGHTLRGLFIIDGKGILRQITMNDLPVGRSVDETLRLVQAFQY
TDSHGEVCPCGWKPGSDTIIPDPKEKMKYFKNHGDN

mRNA from alignment at LSalAtl2s714:285142..291484+

Legend: exonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000010792-706639 ID=EMLSAT00000010792-706639|Name=EMLSAT00000010792|organism=Lepeophtheirus salmonis|type=mRNA|length=6343bp|location=Sequence derived from alignment at LSalAtl2s714:285142..291484+ (Lepeophtheirus salmonis)
TTATAAGTGAAAGTTTTTGATGGAATCGGAGTAGAATTGAGGATCGACAC
CGGAGTCATTCCATTCTATATGTCCTTGCTAGATAAGGAGTCGGATTTGT
GTTTATTTCCTTCCTCTTACGGTTCCTTGCAGCTGATCTAGTTATAGAAC
ATCATAACAGTTAAACTGCTCTCCTCCCAAATATTCTTCAAACTCTGACT
AAAGTACCAGGCTCACTTTCGGTTTCTTTTACTTTTACATACGGGCAAGT
AATAATTTATGCAACTTTGTTCTTGAGGTAGGCAACGTCATTGTCCAAAA
TCAAAGTAACTAGTACATTTAGTTATTTTAGATCTTGAAGAAAGTAAAAA
AATTTCAGTTTGGATAAAAGTTTAATGAAAAAGGTTAAATTTGAAGAGGG
TTACAGATCATTTTATATACACATTCCAGAAAATAAAAAATTAAAGGTAC
ACATATGCCCATAAAACTTTTGAGTTTAGGATCGTGAAGTCATTCTAAAT
TTACATGGAATTTTAGGTATCAATAATATACCTATTAATTATAACTTAAC
TGAATATCTTGTTAGACAATACGCGGAATACGGAATAATAATTAATAAGT
AATAAACTAATAAATAATATAGTTTAAAGTAAAAATAAACAGGAATAAAA
AGAGGGAAAGTGGCTCATCATTTCACTTCAATTGATTGCTGCTCGTGGTG
CAGTTCCCGGCCGGTTTTGAGGAAAATGATCATTCGTGAAAACATTTACA
GCCCTAAGAGTATTAAGAATTTCTCTTCGTGTTATTTTATAATCAAGTAT
ATCTATCTGGTAGTCGATTGTTTACTGTAGAGTCGCGTTGGTTAAGCACT
TAGCAGAGCTACCTTTGCAAGGAGTTTTTCCTTAGCCACGTCACTTTAGG
TTAATCCATAATGAGGTTTTTAATATTGACGATCTTTATATATACCGCAA
ATGGACAGTCCTGCTTCAATGCTCCGGGTAATGCAATAAATGACTATGAT
CATACATAAATATGTATTTTTTTAACATTTTGAATTTCCCTTCTGGAAGG
TGGTGCAATGCATACCGATGATAAGGCTGGAGGCCATAATCTTCAATGGA
CAAAAGCCATGATCTCCAAACCGGCTCCTTTTTGGAAAGGCACAGCAGTT
GTTAAGGGGGAAATGAAAGAAGTACAATTGAGTGACTACAAGGGCAAATA
TCTCGTCTTTTTCTTTTATCCTTTAGATTTCACTTTTGTTTGCCCAACTG
AGATTTTAGCCTTCAACGATAGAGTTGAGGAGTTTAGAAAAATCAATACT
GAGGTTGTGGCCTGCTCTGTGGATTCTCACTTTACACATTTGGCTTGGAC
CAACTTGCCTCGTAAGGAAGGGGGTTTGGGAAAATTGAACATTCCTCTTC
TCTCTGACTTAACTCACAGTATCTCTAAGGACTACGGTGTCTATCTGGAA
GAAAATGGTCATACACTTCGAGGCCTCTTTATCATTGATGGTAAAGGAAT
TTTGAGGCAAATCACAATGAATGATCTCCCTGTAGGACGTTCTGTCGATG
AGACTCTACGTTTAGTTCAAGCATTCCAATACACTGACAGTCATGGAGAA
GTCTGTCCTTGTGGATGGAAACCTGGTAGTGATACTATCATTCCTGATCC
AAAGGAAAAAATGAAATATTTTAAAAATCATGGTGATAATTGAAAATAAA
ATATTTTTTTATTTGTTACATATTATGTAAAAAAACCTTTTTTATTCTTT
TTATATTGTTTCACATTTAGCTTTTTACATCTTTGTTGGTACATGGCTTG
CATGGAGGCATAAAGAGTAGGGAAAAATACAAAAAGTAGATAAATCCTCA
AAACAGAAGGGAAATGAAATGCAAAGTTGTAAGAATTAGGCAATGATACA
GTGAACTTCTTTGTTTCTTCAAAGTATGGTATATTCCTTAGAACGATTKC
KCCTTCAKAAATGAAAGTGGCAGGGMATAGGGGMATCCATAATGTATAGC
GGATCCATGCAATAAAGCCTTGCTGAATATCGTACGTTCGTAGAAGGTAA
TAGGGATACTTTGTTAATTCGATGAGGCAGTATATAGTAAAAGTATAGAA
AATGACGGGTTTATCCTGAATCCTGGGTTCTCCGTCTATGAGAAAAAAAA
GTATAAAATTTCGGCTTCCAATTGTCAAAAAAGCGTTCAAAGATGATGTT
TTCGTATATCCAAAAATTGGATGCAGAACTTCTAAAAACATGAGTAGTGA
GATCATTTTAAGGACACTTCCGACTGATTTGAAGGCATGAGGTATAAAAT
CATTGCCTAATCGAGCATATCGAATGTTCAGAACAGAAAATATATAGAGG
TATGTACAAAACATGAAGAGATTGTAGAAAAAAAGATAAATTTTCCTATT
GGACTCTGAGACGTAACTCAATTCATGCTTCTGAAGATCCTTATATACGT
CAGGGTACTGAAAGGTATTTGAAAAATAGATAGTAATATGTATATTTTAA
AGAAGATGTGATTACTTTACTCCGAAGAAAGTCTTCAGACGACACTTGAT
CACTTAATCGTTTTTTGATTTCATCTTTTGGGTTATCGTCATCTGTTGAA
GACAAATCTTCACTTTTCCACTTTTCAAAGTCAACTTTTAACCAGGGGAG
CTTCTTTGGCTCATGAAGGAGTCGCGGCCACCAGTCAGTTTCTTTTTTGG
GTAGACTTATCATAATTTCTCTTTCTCGAATGACAAAAGAGGAGGTAGAT
GCATCAATAGGCAAGAAAAACTCGATGACAAAGTCATATCTTTGTATTCC
TTGAGTCCCCGTACTTCCTATTGCACAAAATTCAATTTCTTCATCTTCGA
TACATATGTCCGGCTCTCTCTGAATATCTATGATTGCCACTTTGAGAAAC
ACATCTTTCGCTGTTTGAGCCCAGTAGACATTGGGATGCATGTTTCCAAA
GAATTACAAGCACAATGAAAAATTCAATCCAGCTACAAAAAATAAGAATT
GTTCTTTGTAGATGACTGAGGAAAGCAAATTGAAATAAATAATATAAAGG
CAAAGGGACAATCGAAGGAAAGCAATCATAGAGTTACTATATAAATTATA
ATTCTATAAATAATAAGTTTAGCACAGATGAAAAGGTTCCTATGATTATA
TTAATATTCTTAAAAATGAAATTAATAAATAAACCAACTTAGAACAATAA
TGATTTAATTTATGAATTAGGTATGATAATTGATTTATGAAAGAGCGTTC
CTTTTCGCAGTGCTGTATTGAACATTTTACATTTCTACCTTTTCTACAAA
TTCTACTTTTATCGAAATGATGACGTACTACGTATTTACTTGACTATGGC
CAAGGGTAAGGTAGCTAGCTAGACTCCGGCCATTGTCATTAATAGAGGAT
CCAGATAATAATTAATGATAGAAAATGTGGTTATTACAACTTTCTCATAG
ACTTCACACATGTTTATTATGTGACATTTGCCAAGGATAATTTGAATGTA
TACAATTATTATACGATAAATAATGTGCCCTACTCCTTCATTTTAATTAA
AAGCTTCAGTTGCGAAACAGTCAGCGCCAATGTTGGGATTGCATTCTATT
CAACACTTATGTAGATGTTGCAGATCATGAACTTCATATTTTAAATAAAC
TACACTTCAGCTAAACATTGTAGGTTCTCAGCTAATATTCTAAAAAGTAA
AACATTTATTTATCAGTAGTGTACGTTATTTTATCATTTCATTAAAAGCA
AAGGTTAAATATGTATCAGAGGCCATTTCAAAATGGATTCTCATTTTATT
AATCAAACGTATAATTAAATATATTTAGTCAAATAAATATATTTTTCAAA
AGGATATAATCATTAGCTTTGATTTGATATGTAGAAAATATGTTGATATC
CTCACTGTATCCCAATGGAGTAATCTGTTCATTCTCATCTGTCGGCTATT
ACCGTAAAGTAACTATGGATTACAACAGTGTTTGTAGAGACATAAACTAT
AAAATCAATAAGAAATAATAATGTTAGTACTTTCCATAGATCACAAAATT
ATCTATGGAGCACAAGTTTACTATTTAATATTATTTTTTCTCGATTGTCA
ATAACACAATTTAATGAGTAGATTAATAAATATTTCAATGATAATCTGTT
TAAAATACTTGATAGAAAAGTCAATGGAATAATTCTAAATATTTTATTTT
TAATGGAGTCCAATATTCATCCCAACACATATTTTTTTATGGAATTTTTG
TTAACTTCATTTCATTAGACACACAGATAAAGCAACATTATCTATCAAGA
CAGCAAACAAAATTTCAAGTGTTATCTCAAAAAAGTCCCTCATACTTCAA
TAGTTCTTTATAGGACTTTGTAGTACCATGATAACAGTCATGAAAGTTCT
TGCCTTTATTTTCGCTATATTAATAACAGGAGCCCATGGATCTTGTAACA
TAGGTTCACAGACGGACCCAAAAGGAAAAGCAACTCCTGAAGATCCAACA
AATTATCATGAATTTTGTATTTCTTCATTAAGGAACCAAGTCAAAATGGA
ATTTGAAGCAGCTCTTCAATATCTAGTTATGGGAGCCTACTTTGATCAAG
ACACTATCAATCTCAAGGTAGTATTAAAAAAATTGCCATTAATTTAGAAG
AAATGTATATTTTTTCAATTTTTAGGGATTTGGTAAGTTCTTTTGGGAAA
GTGCTGACGAAGAAAGACAGCATGGATTACAATTTATCAAATACTTGCGA
CACAGAGGAGACAAGGGTCTCGATTTCTTTCAAGGAGATATTGAGCCTAT
TCTAAGAAAGTATTCATGGAGTGATGGACTTGATGCTCTTCGTGACGCTC
TTATGATGGAAAAAAAAGTTTCGGGTTCCATAAAGAAGATCATAGATATT
TGCAGTGTTGAAGGAAAGCAAGATTATCTCTCTGGAGATTGGCTCACTGG
TACATGGTTGGAAGAGCAAATGGATGGACAAAGAAAGTTAGCAGGACTTA
TCAACACGTTAAGCAACTTTAGAATTGACCATGAGGCTCTTGGTGACTGG
ATGTTCTCTGAATCATTATTAGAGTAAAAATAAATCCCTAAATATGAAAA
TGAAAAGACTTGAATGTAAAACTACAATAAATAATAAAATTTAAGGAAAA
AATAACCNATTAATTATACATAACCATGTAAATTAAATTCGAGTATATAA
ATCATACATTAAAAAAGTATCAACCGTCCATTTACAAGAATAATAAAATT
AATGATATATAGCACTGACATATTCAATTTAAGTAAAATTCCATCATCTG
TTTCGATTTCCTCGGTCACCTCTGCCTCTACCCCGGCCTCTTCCACGGCC
TCTACTACCAGCTTTAGGAGTAGGAGATTTTGGTCTAAGGGATTCGATTT
TTTCTGTACATCCCGATGTAGTTCCCTTTTCAAAGTATGAATTATAGATT
ACAGGATCAAAGTTAGACATAGTTAGTTCAGGACCTATAATTTAAAAAAA
AAAATATAAATAGATACTAATTGGCCTTTTGATTCAACCGCAAATAATCA
TAATCTTACAATAACTACAAAATATTAAAGACTAACTTAAAAATGAAATA
CATCATAAAGTAATTTAATATAAATAGCAAGTAATATATATCAGATCTTA
ATTGTTAAAAAGTAATATTTGCATGAAAGAATAATATAATTAAGCCCACC
TAAAGTCAGCCAGCCTGGTCTAATAGTCGTGTCACGTCCAAAAATTTGGA
GTCTTCTAGTCCCTAGACAAAAATGTTCAGTAATATGAAACATTTCAACA
GGCTTATCCAAAGACCCTGGCTCAGCTTCTTCATCAATAATTAAATCAAT
ATCAACATTAGCATGGATAAAATCTCCATCCAGAGATCGTCTAACAGTTC
CTTTAATACCCATTAAACAATGCTCTTTAGTCCTTTGAAATACTGCATTA
GGTTCTAAAACTTTAGAGTTTTGAGGATTTCGGTGATTCGTCTGTATCCA
ACATATATCTTCACAACGTCGAAATCCCCAATTTTGGAGACAAAGCCTCC
CCAAATCAAGTCCATCACTTGAGCCACACCAAAGGAATATAAAAGACCGC
GAGGCAGCGATTTCTCCAATATCCAGAGCCATAATACGGTCCCAGTCCCA
AAAATCTACATTTGTCACACCACACGAGCGTGAATATTCTTCAAGCGGAG
GCTCAATAAGTATAACATCAAATTTAGCTCCCTTAAATAGTGAAAATAAT
GATAACCTTTATGCGCACATAGCTTAGTAAATAAGAAAACATATTGCAAA
AGTCAAGAACAACAAAAAAAACATTATCCAAAAGATGTTTGAA

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