There are few small glitches we know about, and which have to be investigated more thoroughly.

In Drupal/Tripal

1. When editing/adding an RNAi experiment, trying to link to a Target gene using the field Primary Target ID: picking an ID could result in the following error: "Title mismatch" when trying to save. However, after the new import, this problem seems to have disappeared. We need to keep an eye on that should it re-appear.
2. On few occasions on Tripal pages, still warnings appear. One is in the feature search page. It looks like a coding problem in the Tripal module.

In GBrowse

1. Exporting a track to GFF does not work using the "Download track data" plugin. The result is an empty page, error message in the logs is: 

[Sun Sep 29 23:36:02 2013] [warn] mod_fcgid: stderr: DBD::Pg::db selectrow_array failed: ERROR: permission denied for relation gff3view
[Sun Sep 29 23:36:02 2013] [warn] mod_fcgid: stderr: DBD::Pg::st execute failed: ERROR: permission denied for relation gff3atts
[Sun Sep 29 23:36:02 2013] [warn] mod_fcgid: stderr: DBD::Pg::st fetchrow_hashref failed: no statement executing

Seems to be caused by missing permissions on these tables.

 Exporting data as GFF file using the "diskette" icon for each track yields an empty GFF file with the same error messages.

 2. The Protein sequence exporter plugin, seems to retrieve only the first gene sequence in an area. So it is necessary to zoom in closely on the gene of choice. However, extracting the correct AA sequence for overlapping genes is not possible. Also, I haven't check if the translated sequence is actually correct. This feature requires more testing.

 3. In Gbrowse details pages (opens when clicking on a gene or transcript), clicking on the links provided under Position takes a long time to load and yields a "region not found" error.