Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
6-phosphofructo-2-kinase fructose- -bisphosphatase 1 isoform x3maker-scaffold527_size145964-snap-gene-0.22gene
6-phosphofructo-2-kinase fructose- -bisphosphatase-likemaker-scaffold370_size193435-snap-gene-0.38gene
6-phosphogluconate decarboxylating isoform 1snap_masked-scaffold106_size358372-processed-gene-0.5gene
6-phosphogluconate dehydrogenasesnap_masked-scaffold1_size3401120-processed-gene-25.11gene
6-phosphogluconolactonasemaker-scaffold879_size85478-snap-gene-0.14gene
6-pyruvoyltetrahydropterin synthase purplesnap_masked-scaffold515_size150689-processed-gene-0.10gene
72 kda type iv collagenasemaker-scaffold876_size86062-snap-gene-0.26gene
78maker-scaffold45_size475391-snap-gene-1.16gene
78 kda glucose-regulatedsnap_masked-scaffold347_size200506-processed-gene-1.5gene
7sk snrna methylphosphate capping enzymemaker-scaffold38_size502422-snap-gene-1.12gene
80 kda mcm3-associated partialsnap_masked-scaffold50_size457468-processed-gene-0.5gene
85 88 kda calcium-independent phospholipase a2maker-scaffold1346_size46090-snap-gene-0.11gene
85 kda calcium-independent phospholipase a2snap_masked-scaffold1346_size46090-processed-gene-0.5gene
8-oxoguanine dna glycosylasemaker-scaffold722_size106786-snap-gene-0.33gene
97 kda heat shocksnap_masked-scaffold227_size249015-processed-gene-0.6gene
a2 proteinmaker-scaffold130_size324016-snap-gene-1.13gene
a2 proteinmaker-scaffold662_size116868-snap-gene-0.14gene
aaa atpasesnap_masked-scaffold1091_size63258-processed-gene-0.4gene
aaa domain-containing proteinmaker-scaffold445_size168248-snap-gene-0.26gene
aael000156- partialsnap_masked-scaffold157_size297442-processed-gene-0.3gene
AAEL002694-PAmaker-scaffold84_size396325-snap-gene-0.24gene
aael003425- partialmaker-scaffold301_size216225-snap-gene-1.20gene
aael003425- partialsnap_masked-scaffold1048_size67263-processed-gene-0.12gene
aael004880- partialmaker-scaffold605_size125465-snap-gene-0.28gene
aael005149- partialsnap_masked-scaffold34_size539781-processed-gene-0.8gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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