Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
acetone carboxylase subunit betamaker-scaffold589_size129586-snap-gene-0.34gene
acetyl- acetyltransferasemaker-scaffold1204_size55710-snap-gene-0.0gene
acetyl- acetyltransferasesnap_masked-scaffold1036_size68118-processed-gene-0.7gene
acetyl- acetyltransferasesnap_masked-scaffold1_size3401120-processed-gene-11.33gene
acetyl- acetyltransferasesnap_masked-scaffold1_size3401120-processed-gene-26.11gene
acetyl- acetyltransferasesnap_masked-scaffold2_size2283618-processed-gene-20.26gene
acetyl- acetyltransferasesnap_masked-scaffold3836_size7343-processed-gene-0.0gene
acetyl- acetyltransferasesnap_masked-scaffold5206_size4892-processed-gene-0.4gene
acetyl- acetyltransferasesnap_masked-scaffold6177_size4062-processed-gene-0.0gene
acetyl- acetyltransferasesnap_masked-scaffold9842_size2319-processed-gene-0.0gene
acetyl- biotin carboxylase subunitmaker-scaffold2119_size20448-snap-gene-0.1gene
acetyl- carboxylasemaker-scaffold73_size413234-snap-gene-3.4gene
acetyl- carboxylasesnap_masked-scaffold11244_size2050-processed-gene-0.1gene
acetyl- carboxylasesnap_masked-scaffold2412_size15940-processed-gene-0.1gene
acetyl- carboxylasesnap_masked-scaffold35_size523699-processed-gene-3.14gene
acetyl- carboxylasesnap_masked-scaffold7709_size3048-processed-gene-0.0gene
acetyl- carboxylase biotin carboxylase subunitmaker-scaffold1983_size23283-snap-gene-0.0gene
acetyl- carboxylase biotin carboxylase subunitmaker-scaffold6988_size3456-snap-gene-0.0gene
acetyl- carboxylase biotin carboxylase subunitsnap_masked-scaffold166_size294552-processed-gene-1.43gene
acetyl- carboxylase biotin carboxylase subunitsnap_masked-scaffold1_size3401120-processed-gene-1.6gene
acetyl- carboxylase biotin carboxylase subunitsnap_masked-scaffold2149_size19838-processed-gene-0.9gene
acetyl- carboxyl transferasesnap_masked-scaffold205_size259573-processed-gene-1.22gene
acetylcholine receptor non-alpha chain-likemaker-scaffold133_size323035-snap-gene-0.22gene
acetylcholine receptor subunit alpha-likemaker-scaffold47_size466558-snap-gene-3.40gene
acetylcholine receptor subunit beta-like 1maker-scaffold902_size83268-snap-gene-0.13gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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