Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
acidic fibroblast growth factor intracellular-bindingmaker-scaffold294_size218657-snap-gene-1.21gene
acid trehalase-like protein 1- partialmaker-scaffold637_size121548-snap-gene-0.24gene
acn9-like mitochondrialmaker-scaffold122_size333723-snap-gene-2.42gene
acn9-like mitochondrialmaker-scaffold434_size172279-snap-gene-0.19gene
aconitase maker-scaffold1622_size33238-snap-gene-0.11gene
aconitase snap_masked-scaffold481_size160081-processed-gene-0.6gene
aconitate hydratasemaker-scaffold420_size176246-snap-gene-0.29gene
aconitate hydratasemaker-scaffold463_size163741-snap-gene-0.3gene
aconitate hydratasemaker-scaffold615_size123629-snap-gene-0.2gene
aconitate hydratasemaker-scaffold6_size1037037-snap-gene-7.0gene
aconitate hydratasemaker-scaffold8901_size2576-snap-gene-0.0gene
aconitate hydratasesnap_masked-scaffold5331_size4740-processed-gene-0.2gene
aconitate hydratasesnap_masked-scaffold9883_size2308-processed-gene-0.0gene
aconitate hydratase 1snap_masked-scaffold2708_size13032-processed-gene-0.3gene
aconitate mitochondrial-likemaker-scaffold295_size218279-snap-gene-0.19gene
acriflavine multidrug resistance protein bmaker-scaffold71_size417697-snap-gene-0.15gene
actinmaker-scaffold1138_size60085-snap-gene-0.11gene
actinmaker-scaffold1185_size56580-snap-gene-0.10gene
actinmaker-scaffold25_size650667-snap-gene-1.14gene
actinmaker-scaffold25_size650667-snap-gene-1.17gene
actinmaker-scaffold444_size168727-snap-gene-0.42gene
actinsnap_masked-scaffold101_size371023-processed-gene-0.5gene
actin actin-like proteinmaker-scaffold1363_size45491-snap-gene-0.9gene
actin-interacting protein 1snap_masked-scaffold1604_size34042-processed-gene-0.6gene
Actin-regulating kinase maker-scaffold22_size673200-snap-gene-5.37gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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