Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
unnamed protein productmaker-scaffold691_size110934-snap-gene-0.30gene
unnamed protein productsnap_masked-scaffold287_size221780-processed-gene-0.6gene
unnamed protein productmaker-scaffold96_size378025-snap-gene-2.46gene
unnamed protein productmaker-scaffold1315_size48675-snap-gene-0.12gene
unnamed protein productmaker-scaffold295_size218279-snap-gene-0.25gene
unnamed protein productmaker-scaffold939_size78603-snap-gene-0.6gene
unnamed protein productsnap_masked-scaffold150_size309978-processed-gene-0.6gene
unnamed protein productmaker-scaffold52_size450388-snap-gene-3.25gene
unnamed protein productsnap_masked-scaffold20_size707684-processed-gene-2.5gene
unnamed protein productmaker-scaffold39_size501901-snap-gene-3.12gene
unnamed protein productmaker-scaffold612_size124412-snap-gene-0.20gene
unnamed protein productmaker-scaffold2567_size14419-snap-gene-0.4gene
unnamed protein productmaker-scaffold2580_size14280-snap-gene-0.1gene
unnamed protein productmaker-scaffold408_size180710-snap-gene-0.42gene
unnamed protein productmaker-scaffold417_size177606-snap-gene-0.51gene
unnamed protein productmaker-scaffold193_size270907-snap-gene-0.14gene
unnamed protein productmaker-scaffold127_size327531-snap-gene-2.32gene
unnamed protein productmaker-scaffold1503_size38295-snap-gene-0.3gene
unnamed protein productmaker-scaffold291_size219542-snap-gene-1.23gene
unnamed protein productmaker-scaffold785_size97262-snap-gene-0.15gene
unnamed protein productmaker-scaffold874_size86240-snap-gene-0.14gene
unnamed protein productmaker-scaffold1073_size64583-snap-gene-0.7gene
unnamed protein productsnap_masked-scaffold395_size185061-processed-gene-0.22gene
unnamed protein productmaker-scaffold10_size831480-snap-gene-2.11gene
unnamed protein productmaker-scaffold47_size466558-snap-gene-3.36gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
Downloads