Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
uroporphyrinogen decarboxylasesnap_masked-scaffold166_size294552-processed-gene-1.17gene
uroporphyrinogen decarboxylasesnap_masked-scaffold1_size3401120-processed-gene-14.30gene
uroporphyrinogen decarboxylasesnap_masked-scaffold9782_size2333-processed-gene-0.0gene
usher syndrome type-1g protein homologmaker-scaffold1197_size55989-snap-gene-0.12gene
USP48 partialmaker-scaffold864_size87066-snap-gene-0.20gene
utp--glucose-1-phosphate uridylyltransferasemaker-scaffold208_size258758-snap-gene-0.24gene
uv excision repair protein rad23-like protein bmaker-scaffold719_size106944-snap-gene-0.29gene
uvrabc system protein amaker-scaffold827_size91267-snap-gene-0.2gene
va3_solri ame: fullmaker-scaffold332_size203095-snap-gene-1.22gene
va5_rhybr ame: fullmaker-scaffold202_size261857-snap-gene-1.20gene
vacuolar atpase g subunit-like proteinsnap_masked-scaffold4150_size6548-processed-gene-0.0gene
vacuolar atp synthase 21 kda proteolipid subunitmaker-scaffold1408_size42850-snap-gene-0.10gene
vacuolar atp synthase subunit bsnap_masked-scaffold1655_size32039-processed-gene-0.5gene
vacuolar fusion protein ccz1 homologmaker-scaffold911_size81771-snap-gene-0.21gene
vacuolar protein sortingmaker-scaffold430_size173499-snap-gene-0.43gene
vacuolar protein-sortingmaker-scaffold791_size96783-snap-gene-0.31gene
vacuolar protein-sortingmaker-scaffold589_size129586-snap-gene-0.47gene
vacuolar protein sorting-associated protein 11-like proteinmaker-scaffold1416_size42578-snap-gene-0.10gene
vacuolar protein sorting-associated protein 11-like proteinmaker-scaffold104_size368486-snap-gene-2.38gene
vacuolar protein sorting-associated protein 13bmaker-scaffold275_size226830-snap-gene-1.20gene
vacuolar protein-sorting-associated protein 25-likesnap_masked-scaffold14_size734282-processed-gene-2.17gene
vacuolar protein sorting-associated protein 26b-likemaker-scaffold243_size241480-snap-gene-1.24gene
vacuolar protein sorting-associated protein 29-likemaker-scaffold99_size374999-snap-gene-2.28gene
vacuolar protein sorting-associated protein 33amaker-scaffold417_size177606-snap-gene-0.53gene
vacuolar protein-sorting-associated protein 36-like isoform x2maker-scaffold1403_size43014-snap-gene-0.11gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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