Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
wd repeat-containing protein 48maker-scaffold19_size710362-snap-gene-0.20gene
wd repeat-containing protein 55maker-scaffold96_size378025-snap-gene-0.18gene
wd repeat-containing protein 57maker-scaffold225_size250570-snap-gene-1.16gene
wd repeat-containing protein 59 isoform x1maker-scaffold670_size114954-snap-gene-0.18gene
wd repeat-containing protein 59 isoform x2snap_masked-scaffold363_size195477-processed-gene-0.19gene
wd repeat-containing protein 59 isoform x2snap_masked-scaffold597_size128559-processed-gene-0.5gene
wd repeat-containing protein 74maker-scaffold14_size734282-snap-gene-1.24gene
wd repeat-containing protein 78maker-scaffold389_size186684-snap-gene-0.21gene
wd repeat-containing protein 82snap_masked-scaffold907_size82601-processed-gene-0.9gene
wd repeat-containing protein 85-likemaker-scaffold98_size375582-snap-gene-1.14gene
wd repeat-containing protein 91maker-scaffold41_size498431-snap-gene-1.19gene
wd repeat-containing protein 92maker-scaffold934_size79169-snap-gene-0.25gene
wd repeat-containing protein cg11141maker-scaffold387_size188669-snap-gene-0.19gene
wd repeat-containing protein partialmaker-scaffold30_size591359-snap-gene-1.16gene
wd repeat domain-containing protein 83 isoform x2snap_masked-scaffold474_size162001-processed-gene-0.21gene
wd repeat domain phosphoinositide-interacting protein 2maker-scaffold224_size251237-snap-gene-1.45gene
wd repeat domain phosphoinositide-interacting protein 2-likemaker-scaffold374_size191929-snap-gene-0.36gene
wd repeat domain phosphoinositide-interacting protein 3-likemaker-scaffold1386_size43912-snap-gene-0.5gene
wd repeat domain phosphoinositide-interacting protein 4maker-scaffold222_size251774-snap-gene-0.23gene
wd-repeat proteinsnap_masked-scaffold1604_size34042-processed-gene-0.9gene
web family protein chloroplasticmaker-scaffold109_size355148-snap-gene-1.23gene
werner syndrome atp-dependent helicasemaker-scaffold1282_size50771-snap-gene-0.14gene
werner syndrome atp-dependent helicase homologmaker-scaffold1282_size50771-snap-gene-0.15gene
white family atp-binding cassette transportermaker-scaffold122_size333723-snap-gene-2.34gene
williams-beuren syndrome chromosomal region 27snap_masked-scaffold483_size159862-processed-gene-0.1gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
Downloads