Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
xk-related protein 6-likemaker-scaffold1082_size63748-snap-gene-0.15gene
xpa-binding protein 1maker-scaffold385_size188773-snap-gene-0.24gene
Xylanasemaker-scaffold72_size415059-snap-gene-2.23gene
xylose isomerasesnap_masked-scaffold9446_size2417-processed-gene-0.2gene
xylose isomerasesnap_masked-scaffold2_size2283618-processed-gene-2.15gene
xylosyltransferase 1-likemaker-scaffold155_size301336-snap-gene-2.9gene
xylulose kinasemaker-scaffold29_size597861-snap-gene-4.41gene
y3509_dicdi ame: fullmaker-scaffold817_size93049-snap-gene-0.11gene
y-box protein ct-p40maker-scaffold627_size122700-snap-gene-0.27gene
yeats domain containing protein 4snap_masked-scaffold97_size377342-processed-gene-0.1gene
yellow precursormaker-scaffold356_size197960-snap-gene-0.38gene
yellow-x1c precursormaker-scaffold212_size255419-snap-gene-1.31gene
y+l amino acid transporter 2maker-scaffold1489_size38734-snap-gene-0.9gene
y+l amino acid transporter 2-likemaker-scaffold201_size263271-snap-gene-0.11gene
ylp motif-containing protein 1maker-scaffold4181_size6467-snap-gene-0.4gene
yrdc domain-containing mitochondrial-likemaker-scaffold103_size370364-snap-gene-2.25gene
yrinic acid -diamide mitochondrial precursormaker-scaffold652_size119135-snap-gene-0.17gene
yth domain-containing protein 1maker-scaffold353_size198981-snap-gene-0.35gene
YTP1maker-scaffold345_size201316-snap-gene-0.10gene
z band alternatively spliced pdz-motif protein isoform pmaker-scaffold445_size168248-snap-gene-0.22gene
zer-1-like proteinsnap_masked-scaffold38_size502422-processed-gene-0.10gene
zfh4 maker-scaffold1413_size42750-snap-gene-0.5gene
zgc:103474 proteinmaker-scaffold798_size95657-snap-gene-0.31gene
Zgc:56454maker-scaffold37_size504123-snap-gene-2.16gene
zinc bindingmaker-scaffold59_size442576-snap-gene-3.30gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
Downloads