Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
zinc finger protein 300-likemaker-scaffold60_size442463-snap-gene-2.14gene
zinc finger protein 302maker-scaffold136_size321413-snap-gene-2.18gene
zinc finger protein 330 homologmaker-scaffold359_size197282-snap-gene-0.32gene
zinc finger protein 33a-likemaker-scaffold1268_size51707-snap-gene-0.14gene
zinc finger protein 33a-likemaker-scaffold1490_size38656-snap-gene-0.9gene
zinc finger protein 345-likemaker-scaffold470_size172058-snap-gene-0.33gene
zinc finger protein 347-likemaker-scaffold627_size122700-snap-gene-0.38gene
zinc finger protein 37-likemaker-scaffold1335_size46909-snap-gene-0.14gene
zinc finger protein 395-likemaker-scaffold333_size203007-snap-gene-1.12gene
zinc finger protein 410-likemaker-scaffold272_size230267-snap-gene-0.23gene
zinc finger protein 420-likemaker-scaffold168_size293125-snap-gene-1.86gene
zinc finger protein 420-likemaker-scaffold1179_size56971-snap-gene-0.19gene
zinc finger protein 420-likesnap_masked-scaffold336_size202805-processed-gene-1.27gene
zinc finger protein 420-likesnap_masked-scaffold797_size95806-processed-gene-0.10gene
zinc finger protein 521-like isoform x2maker-scaffold2181_size19268-snap-gene-0.5gene
zinc finger protein 534maker-scaffold292_size219010-snap-gene-1.43gene
zinc finger protein 564-like isoform x1maker-scaffold999_size72078-snap-gene-0.11gene
zinc finger protein 569-likesnap_masked-scaffold57_size444674-processed-gene-1.2gene
zinc finger protein 569- partialmaker-scaffold55_size446313-snap-gene-3.30gene
zinc finger protein 585a isoform 2snap_masked-scaffold1048_size67263-processed-gene-0.1gene
zinc finger protein 62 homologsnap_masked-scaffold477_size161254-processed-gene-0.8gene
zinc finger protein 648maker-scaffold55_size446313-snap-gene-3.28gene
zinc finger protein 64 isoforms 1 and 2 isoform x2maker-scaffold353_size198981-snap-gene-0.28gene
zinc finger protein 674snap_masked-scaffold810_size94089-processed-gene-0.11gene
zinc finger protein 699- partialmaker-scaffold55_size446313-snap-gene-3.31gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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