Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
zinc metalloproteinasemaker-scaffold481_size160081-snap-gene-0.15gene
zinc metalloproteinase nas-12 precursormaker-scaffold300_size216557-snap-gene-0.12gene
zinc metalloproteinase nas-15maker-scaffold434_size172279-snap-gene-0.18gene
zinc metalloproteinase nas-8-likemaker-scaffold97_size377342-snap-gene-1.15gene
zinc phosphodiesterase elac protein 1snap_masked-scaffold879_size85478-processed-gene-0.4gene
zinc proteasemaker-scaffold139_size317827-snap-gene-1.24gene
zinc transporter 1 isoform x2maker-scaffold2453_size15579-snap-gene-0.7gene
zinc transporter 2maker-scaffold99_size374999-snap-gene-2.26gene
zinc transporter 5maker-scaffold33_size549341-snap-gene-2.10gene
zinc transporter 6-amaker-scaffold451_size166902-snap-gene-0.18gene
zinc transporter foimaker-scaffold527_size145964-snap-gene-0.20gene
zinc transporter zip1maker-scaffold630_size122347-snap-gene-0.16gene
zinc transporter zip1maker-scaffold19_size710362-snap-gene-0.21gene
zinc transporter zip1maker-scaffold94_size379870-snap-gene-0.13gene
zinc transporter zip1maker-scaffold1792_size27886-snap-gene-0.4gene
zinc transporter zip1maker-scaffold9_size846264-snap-gene-1.10gene
zinc transporter zip1maker-scaffold9_size846264-snap-gene-0.10gene
zinc transporter zip11 isoform x2maker-scaffold507_size152468-snap-gene-0.38gene
zinc transporter zip13-likesnap_masked-scaffold277_size226016-processed-gene-1.4gene
zinc transporter zip14maker-scaffold838_size90379-snap-gene-0.10gene
zinc transporter zip1-likemaker-scaffold9_size846264-snap-gene-0.9gene
zinc transporter zip3 isoform x1maker-scaffold708_size108518-snap-gene-0.13gene
ZK370.7maker-scaffold388_size188554-snap-gene-0.22gene
ZK370.7maker-scaffold185_size275389-snap-gene-1.34gene
zn-dependent alcohol dehydrogenasemaker-scaffold170_size291898-snap-gene-1.60gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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