Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
acyl-protein thioesterase 2maker-scaffold447_size167621-snap-gene-0.44gene
acyl- synthetasemaker-scaffold2333_size17043-snap-gene-0.0gene
acyl- synthetasesnap_masked-scaffold1802_size27562-processed-gene-0.2gene
acyl- synthetasesnap_masked-scaffold35_size523699-processed-gene-3.12gene
acyl- synthetasesnap_masked-scaffold899_size83673-processed-gene-0.13gene
acyl- synthetase family member mitochondrialmaker-scaffold34_size539781-snap-gene-4.26gene
adam 10maker-scaffold412_size179788-snap-gene-0.23gene
adamts-like protein 3-likemaker-scaffold513_size150706-snap-gene-0.17gene
adamts-like protein partialmaker-scaffold513_size150706-snap-gene-0.19gene
adenine deaminasesnap_masked-scaffold328_size205007-processed-gene-1.4gene
adenine phosphoribosyltransferasesnap_masked-scaffold1006_size71794-processed-gene-0.20gene
adenine phosphoribosyltransferasesnap_masked-scaffold5523_size4559-processed-gene-0.0gene
adenomatous polyposis colimaker-scaffold338_size202645-snap-gene-1.14gene
adenosine 3 -phospho 5 -phosphosulfate transporter 1snap_masked-scaffold297_size217559-processed-gene-0.20gene
adenosine deaminasemaker-scaffold246_size239296-snap-gene-1.24gene
adenosine kinasesnap_masked-scaffold1357_size45828-processed-gene-0.2gene
adenosine kinasesnap_masked-scaffold330_size203968-processed-gene-1.0gene
adenosine kinasesnap_masked-scaffold420_size176246-processed-gene-0.11gene
adenosine trna methylthiotransferasemaker-scaffold1337_size46815-snap-gene-0.2gene
adenosine trna methylthiotransferasemaker-scaffold32_size558451-snap-gene-4.0gene
adenosine trna-specific 3 isoform 1maker-scaffold33_size549341-snap-gene-1.25gene
Adenosylhomocysteinasemaker-scaffold155_size301336-snap-gene-0.11gene
adenosylhomocysteinase 3snap_masked-scaffold29_size597861-processed-gene-2.3gene
adenylate cyclasemaker-scaffold1736_size29583-snap-gene-0.4gene
adenylate cyclasesnap_masked-scaffold755_size101758-processed-gene-0.9gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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