Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
adenylate cyclase maker-scaffold517_size150149-snap-gene-0.20gene
adenylate cyclase typemaker-scaffold161_size295871-snap-gene-1.29gene
adenylate cyclase type 2- partialmaker-scaffold526_size146413-snap-gene-0.24gene
adenylate cyclase type 8 isoform x2maker-scaffold140_size315649-snap-gene-1.16gene
adenylate cyclase type partialsnap_masked-scaffold885_size84862-processed-gene-0.6gene
adenylate kinasesnap_masked-scaffold1_size3401120-processed-gene-8.18gene
adenylate kinasesnap_masked-scaffold2998_size10786-processed-gene-0.4gene
adenylate kinase 1maker-scaffold933_size79438-snap-gene-0.18gene
adenylate kinase2snap_masked-scaffold358_size197577-processed-gene-0.41gene
adenylate kinase isoenzyme 1maker-scaffold304_size215464-snap-gene-1.20gene
adenylate kinase isoenzyme 6snap_masked-scaffold19_size710362-processed-gene-4.6gene
adenylosuccinate synthetasemaker-scaffold644_size120472-snap-gene-0.11gene
adenylosuccinate synthetasesnap_masked-scaffold35_size523699-processed-gene-3.17gene
adenylyltransferasesnap_masked-scaffold1_size3401120-processed-gene-20.1gene
adenylyltransferase and sulfurtransferase mocs3-likesnap_masked-scaffold313_size211302-processed-gene-1.4gene
adhesinmaker-scaffold131_size323982-snap-gene-2.17gene
adhesin-like proteinmaker-scaffold28_size608977-snap-gene-5.8gene
adhesive plaque matrix partialmaker-scaffold546_size140615-snap-gene-0.34gene
adipokinetic hormone receptormaker-scaffold235_size242898-snap-gene-1.11gene
adipokinetic hormone receptor isoform x3maker-scaffold68_size422247-snap-gene-2.13gene
adiponectin receptor protein 2-likesnap_masked-scaffold265_size231475-processed-gene-0.7gene
adipor-like receptor cg5315maker-scaffold106_size358372-snap-gene-2.32gene
a disintegrin and metalloproteinase with thrombospondin motifs 16maker-scaffold101_size371023-snap-gene-2.26gene
a disintegrin and metalloproteinase with thrombospondin motifs 18maker-scaffold455_size166772-snap-gene-0.41gene
a disintegrin and metalloproteinase with thrombospondin motifs 18-like isoform x1maker-scaffold455_size166772-snap-gene-0.42gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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