Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
af144503_14-coumarate: ligasemaker-scaffold314_size210232-snap-gene-1.15gene
af154555_1paired domain transcription factor variant amaker-scaffold182_size278544-snap-gene-0.11gene
af190129_1na+ k+ 2cl- cotransportermaker-scaffold1253_size52701-snap-gene-0.12gene
af190129_1na+ k+ 2cl- cotransportermaker-scaffold2421_size15883-snap-gene-0.1gene
af190129_1na+ k+ 2cl- cotransportermaker-scaffold33_size549341-snap-gene-0.16gene
af190129_1na+ k+ 2cl- cotransportersnap_masked-scaffold609_size125094-processed-gene-0.16gene
af249896_1alpha lactalbuminmaker-scaffold23_size669530-snap-gene-3.10gene
af270648_1mature parasite-infected erythrocyte surface antigensnap_masked-scaffold236_size242448-processed-gene-0.8gene
AF312033_9ZANsnap_masked-scaffold473_size162088-processed-gene-0.11gene
af321574_1acetylcholinesterase precursormaker-scaffold170_size291898-snap-gene-1.43gene
af334780_1pregnancy-induced growth inhibitor okl38maker-scaffold990_size72856-snap-gene-0.14gene
af336364_1allatostatin receptormaker-scaffold20_size707684-snap-gene-5.8gene
af353513_1mannose-6-phosphate insulin-like growth factor ii receptormaker-scaffold183_size276960-snap-gene-0.15gene
af357226_1cub-serine proteasemaker-scaffold304_size215464-snap-gene-1.25gene
af357226_1cub-serine proteasemaker-scaffold359_size197282-snap-gene-0.24gene
af357226_1cub-serine proteasemaker-scaffold745_size103310-snap-gene-0.13gene
af364404_1rh-like proteinsnap_masked-scaffold440_size170678-processed-gene-0.11gene
af375601_1potassium channel protein shalmaker-scaffold1241_size53772-snap-gene-0.14gene
af458289_1cellular retinoic acid retinol binding proteinmaker-scaffold237_size242172-snap-gene-0.13gene
af461035_1collagenolytic serine proteasemaker-scaffold963_size76285-snap-gene-0.15gene
af495541_1prolyl 4-hydroxylase alpha-related protein ph4maker-scaffold487_size158652-snap-gene-0.42gene
af512518_1pyrroline-5-carboxylase synthasemaker-scaffold575_size133042-snap-gene-0.37gene
afg3-like protein 2maker-scaffold906_size82779-snap-gene-0.14gene
aftiphilin isoform x6maker-scaffold127_size327531-snap-gene-2.28gene
AGAP000799-PAmaker-scaffold1109_size62184-snap-gene-0.13gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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