Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
AGAP004309-PAmaker-scaffold1058_size66152-snap-gene-0.14gene
AGAP004394-PAmaker-scaffold816_size93094-snap-gene-0.13gene
AGAP004611-PAmaker-scaffold287_size221780-snap-gene-0.21gene
AGAP004717-PCmaker-scaffold735_size104922-snap-gene-0.21gene
AGAP004717-PCmaker-scaffold87_size395581-snap-gene-1.14gene
AGAP005020-PAmaker-scaffold139_size317827-snap-gene-0.15gene
AGAP005117-PAsnap_masked-scaffold322_size207131-processed-gene-1.11gene
AGAP005256-PAsnap_masked-scaffold583_size130250-processed-gene-0.6gene
AGAP005417-PAmaker-scaffold67_size430214-snap-gene-1.16gene
AGAP005644-PAmaker-scaffold139_size317827-snap-gene-1.23gene
AGAP005650-PAmaker-scaffold589_size129586-snap-gene-0.35gene
AGAP005699-PAmaker-scaffold371_size192504-snap-gene-0.18gene
AGAP005729-PAmaker-scaffold1187_size56475-snap-gene-0.13gene
AGAP005777-PAmaker-scaffold1282_size50771-snap-gene-0.17gene
AGAP005777-PAmaker-scaffold1962_size23816-snap-gene-0.7gene
AGAP006594-PBmaker-scaffold67_size430214-snap-gene-2.7gene
AGAP006598-PAmaker-scaffold505_size153196-snap-gene-0.19gene
AGAP006959-PAsnap_masked-scaffold419_size176504-processed-gene-0.1gene
AGAP007008-PAmaker-scaffold740_size104176-snap-gene-0.28gene
AGAP007146-PAmaker-scaffold1406_size42870-snap-gene-0.10gene
AGAP007416-PAmaker-scaffold93_size381549-snap-gene-0.14gene
AGAP007574-PAmaker-scaffold224_size251237-snap-gene-1.44gene
AGAP007725-PAmaker-scaffold98_size375582-snap-gene-2.34gene
AGAP007858-PAmaker-scaffold747_size103044-snap-gene-0.16gene
AGAP007890-PAmaker-scaffold140_size315649-snap-gene-2.20gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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