Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
AGAP007930-PAsnap_masked-scaffold49_size462716-processed-gene-3.3gene
AGAP007933-PAmaker-scaffold439_size171548-snap-gene-0.26gene
AGAP008073-PAmaker-scaffold579_size130606-snap-gene-0.30gene
AGAP008288-PAmaker-scaffold744_size103476-snap-gene-0.11gene
AGAP008321-PAsnap_masked-scaffold993_size72668-processed-gene-0.4gene
AGAP008744-PAmaker-scaffold178_size283195-snap-gene-1.30gene
AGAP008806-PAmaker-scaffold69_size418775-snap-gene-2.24gene
AGAP008907-PAmaker-scaffold966_size75752-snap-gene-0.18gene
AGAP008926-PAmaker-scaffold301_size216225-snap-gene-1.21gene
AGAP008996-PAmaker-scaffold727_size105747-snap-gene-0.18gene
AGAP009045-PAmaker-scaffold671_size114370-snap-gene-0.30gene
AGAP009116-PAmaker-scaffold612_size124412-snap-gene-0.21gene
AGAP009128-PAsnap_masked-scaffold430_size173499-processed-gene-0.11gene
AGAP009281-PAmaker-scaffold5_size1054832-snap-gene-5.9gene
AGAP009693-PAsnap_masked-scaffold191_size271209-processed-gene-0.7gene
AGAP009769-PAmaker-scaffold124_size330879-snap-gene-2.10gene
AGAP010005-PAsnap_masked-scaffold1123_size61443-processed-gene-0.0gene
AGAP010222-PAmaker-scaffold34_size539781-snap-gene-4.17gene
AGAP010230-PAmaker-scaffold1642_size32345-snap-gene-0.10gene
AGAP010394-PAmaker-scaffold28_size608977-snap-gene-1.19gene
AGAP010438-PAmaker-scaffold80_size398941-snap-gene-2.16gene
AGAP010608-PAmaker-scaffold269_size230758-snap-gene-1.33gene
AGAP010691-PAsnap_masked-scaffold590_size129399-processed-gene-0.3gene
AGAP011128-PAsnap_masked-scaffold30_size591359-processed-gene-4.18gene
AGAP011350-PAmaker-scaffold555_size137745-snap-gene-0.24gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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