Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
alanine--glyoxylate aminotransferase 2-like partialsnap_masked-scaffold774_size99688-processed-gene-0.6gene
alanine-glyoxylate aminotransferase-like protein proteinmaker-scaffold431_size173393-snap-gene-0.26gene
alanine--trna cytoplasmicmaker-scaffold397_size184017-snap-gene-0.41gene
alanyl-trna synthetasemaker-scaffold1010_size71100-snap-gene-0.3gene
alanyl-trna synthetasemaker-scaffold258_size234804-snap-gene-1.1gene
alanyl-trna synthetasesnap_masked-scaffold10517_size2183-processed-gene-0.0gene
alanyl-trna synthetasesnap_masked-scaffold1_size3401120-processed-gene-20.22gene
alanyl-trna synthetasesnap_masked-scaffold5056_size5066-processed-gene-0.0gene
alba-like protein c9orf23-like proteinmaker-scaffold589_size129586-snap-gene-0.52gene
alcohol dehydrogenasemaker-scaffold170_size291898-snap-gene-1.61gene
alcohol dehydrogenasemaker-scaffold187_size272365-snap-gene-1.29gene
alcohol dehydrogenasemaker-scaffold82_size396747-snap-gene-2.28gene
alcohol dehydrogenasemaker-scaffold841_size89765-snap-gene-0.18gene
alcohol dehydrogenasesnap_masked-scaffold4120_size6625-processed-gene-0.3gene
alcohol dehydrogenase class iiimaker-scaffold3917_size7137-snap-gene-0.0gene
alcohol dehydrogenase family proteinmaker-scaffold866_size86999-snap-gene-0.14gene
alcohol dehydrogenase zinc-binding domain proteinmaker-scaffold1736_size29583-snap-gene-0.3gene
alcohol dehydrogenase zinc-binding domain proteinmaker-scaffold73_size413234-snap-gene-3.3gene
aldehyde dehydrogenasemaker-scaffold1010_size71100-snap-gene-0.4gene
aldehyde dehydrogenasemaker-scaffold1033_size68652-snap-gene-0.1gene
aldehyde dehydrogenasemaker-scaffold1328_size47460-snap-gene-0.1gene
aldehyde dehydrogenasemaker-scaffold1247_size53216-snap-gene-0.1gene
aldehyde dehydrogenasemaker-scaffold3944_size7063-snap-gene-0.2gene
aldehyde dehydrogenasemaker-scaffold455_size166772-snap-gene-0.45gene
aldehyde dehydrogenasemaker-scaffold9126_size2496-snap-gene-0.1gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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