Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
alkaline ceramidasesnap_masked-scaffold832_size90819-processed-gene-0.4gene
alkaline ceramidase 3-likemaker-scaffold2266_size17862-snap-gene-0.3gene
alkaline phosphatasemaker-scaffold1398_size43383-snap-gene-0.1gene
alkaline phosphatasesnap_masked-scaffold11503_size2009-processed-gene-0.0gene
alkaline phosphatase 4maker-scaffold248_size238799-snap-gene-1.29gene
alkaline tissue-nonspecific isozyme precursormaker-scaffold397_size184017-snap-gene-0.35gene
alkylated dna repair protein alkb-like protein 5snap_masked-scaffold857_size87770-processed-gene-0.1gene
alkylated dna repair protein alkb-like protein 7maker-scaffold224_size251237-snap-gene-1.52gene
alkylated dna repair protein alkb-like protein 8maker-scaffold15_size728074-snap-gene-3.12gene
alkyl hydroperoxide reductasemaker-scaffold1529_size37205-snap-gene-0.0gene
allantoate amidohydrolasesnap_masked-scaffold227_size249015-processed-gene-1.24gene
allatostatin a receptormaker-scaffold338_size202645-snap-gene-1.15gene
allatostatin precursor proteinmaker-scaffold466_size163480-snap-gene-0.20gene
allatotropin precursormaker-scaffold14_size734282-snap-gene-6.26gene
allergen aca s 13maker-scaffold578_size132436-snap-gene-0.31gene
alpha-1-antiproteinase 2-likemaker-scaffold808_size94304-snap-gene-0.14gene
alpha-2c adrenergic receptorsnap_masked-scaffold235_size242898-processed-gene-1.7gene
alpha-2-macroglobiln splicing variant 1 precursormaker-scaffold1177_size57108-snap-gene-0.11gene
alpha-2-macroglobulin receptor-associated proteinmaker-scaffold244_size240795-snap-gene-1.36gene
alpha-2-macroglobulin receptor-associated proteinmaker-scaffold383_size189472-snap-gene-0.41gene
alpha-aminoadipic semialdehyde dehydrogenasemaker-scaffold787_size97196-snap-gene-0.11gene
alpha-aminoadipic semialdehyde dehydrogenase isoform x2maker-scaffold57_size444674-snap-gene-0.22gene
alpha-aminoadipic semialdehyde mitochondrialmaker-scaffold178_size283195-snap-gene-1.34gene
alpha-amylasesnap_masked-scaffold1753_size28935-processed-gene-0.2gene
alpha-amylase 1maker-scaffold29_size597861-snap-gene-1.15gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
Downloads